非洲爪蟾短型肽聚糖识别蛋白基因的克隆与鉴定

采用生物信息学方法首次对非洲爪蟾短型肽聚糖识别蛋白(xePGRP-S)基因进行了克隆,并对其在胚胎发育和成年爪蟾各组织中的表达状况进行了分析。xePGRP-ScDNA全长720bp,开放阅读框为549bp,编码182个氨基酸。序列比对显示xePGRP-S与其他物种PGRP-S的序列相似性在42.4%-50.5%之间。RT-PCR显示在非洲爪蟾胚胎发育至3d时可以明显检测到xePGRP-S的表达,之后呈持续性表达,且在所检测的心、肝、脾、肺、肾、肠和胃这7种组织器官中呈组成型表达。     

非洲爪蟾IL-6基因的克隆及生物信息学分析

生物信息学作为一门新兴学科,已经应用到生命科学、临床医药、工农业等方面。白细胞介素-6(IL-6)是机体重要的免疫因子,但在两栖类中未见报道。采用生物信息学方法对两栖类模式动物非洲爪蟾IL-6进行分析。以人IL-6基因对非洲爪蟾数据库进行搜索、分析,并采用RT-PCR方法对所得序列进行验证。结果表明,非洲爪蟾IL-6基因位于scaffold_52基因架上,具有保守的IL-6家族基序。采用生物信息新方法进行不同物种的免疫基因挖掘、克隆,是一种有效的方法。     

非洲爪蟾基因MGC64236的克隆及初步分析

MGC64236基因是本实验室用脐静脉内皮细胞免疫的兔血清筛选非洲爪蟾cDNA文库而鉴定的一个功能未知的基因.本研究提取非洲爪蟾受精卵总RNA通过RT-PCR得到基因MGC64236的开放读码框651 bp、编码202个氨基酸;运用生物信息学研究工具进行分析,发现该基因编码的蛋白有3个潜在的跨膜域,有一保守的结构域DUF1370, 可能通过其胞内部分的磷酸化机制在介导细胞内外的信号转导中发挥重要作用;在非洲爪蟾胚胎各个发育时期用RT-PCR检测该基因的表达情况,发现在非洲爪蟾胚胎发育的几个重要时期该基因都有高表达,而在成体则特异地表达于脑和眼等神经组织;构建绿色荧光融合蛋白真核表达载体并转染HEK293细胞, 对MGC64236蛋白的亚细胞定位,发现MGC64236蛋白比较特异地表达在细胞膜.     

非洲爪蟾干扰素-1基因的原核表达

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非洲爪蟾GATA-1转录因子与爪蟾发育

GATA－1是GATA结合蛋白（GATA－binding protein）家族的成员之一,正向调节红细胞特异性基因的表达,是红系终末分化所必需的因子。与其他物种不同的是,非洲爪蟾GATA－1转录因子具有两业型,两者结构极为相似,但存在功能上的差异,非洲爪蟾GATA－1转录因子在爪蟾发育过程中起着重要的调节作用。     

非洲爪蟾肌肉决定基因Xmyf—5表达调控的研究

Ｘｍｙｆ－５是爪蟾胚胎肌细胞决定的关键基因之一,研究Ｘｍｙｆ－５的表达调控有助于揭示肌肉原基的形成和肌肉发育的分子机制。从爪蟾部分基因组文库筛选到Ｘｍｙｆ－５５‘上游４．９ｋｂ片段。该片段指导报告基因在爪蟾胚胎内的表达以及其缺失片段指导的报告基因活性分析结果显示,Ｘｍ６ｓｆ－５５’上游４．９ｋｂ片段内含有指导Ｘｎｙｆ－５在胚胎内的表达以及其缺失片段指导的报告基因活性分析结果显示,Ｘｍｙｆ－５５‘     

非洲爪蟾PAPC多克隆抗体的制备及其特异性鉴定

非洲爪蟾ParaxialProtocadherin(PAPC)是一个在爪蟾Spemann组织者特异表达的膜蛋白.它在爪蟾原肠运动阶段的汇聚延伸运动和体节发生阶段的体节边界形成,以及早期听泡的形态发生和细胞特化过程中都有重要的作用.为了研究PAPC基因在早期胚胎发育过程中的表达及其生物学功能,需要制备PAPC抗体.应用谷胱甘肽S-转移酶(glutathioneStransferase,GST)表达系统表达GST-PAPC融合蛋白,亲和纯化后用以免疫新西兰大白兔,获得PAPC多克隆抗体.免疫印迹分析发现,以1∶3000稀释的该多克隆抗体为一抗时,能够在转染了全长PAPC质粒的HEK293T细胞的蛋白质抽提物中,特异地识别出150ku的印迹条带.同时,GST-PAPC融合蛋白可以竞争性抑制该抗体对全长PAPC质粒转染细胞的蛋白质抽提物的特异性条带.用1∶500稀释的该抗体为一抗进行免疫荧光分析时,发现,PAPC多克隆抗体能够识别在HEK293T细胞中过表达以及爪蟾动物极细胞中过表达的PAPC蛋白,荧光信号定位在细胞膜上.免疫印迹分析证明,PAPC抗体能够识别爪蟾胚胎中内源表达的PAPC蛋白.     

一个调控抗菌肽表达的小菜蛾肽聚糖识别蛋白(PxPGRP-SA)

【目的】肽聚糖识别蛋白(peptidoglycan recognition proteins,PGRPs)是昆虫免疫系统中一类重要的模式识别蛋白。本研究旨在阐明经苏云金芽孢杆菌Bacillus thuringiensis侵染后,小菜蛾Plutella xylostella PGRP-SA基因(命名为Px PGRP-SA)在体内的表达模式和对抗菌肽基因的表达调控。【方法】本研究利用实时荧光定量PCR(qRT-PCR)技术分析B.thuringiensis侵染小菜蛾幼虫后Px PGRP-SA的转录模式,通过RNAi技术结合抗血清封闭实验检测Px PGRP-SA对小菜蛾抗菌肽基因的表达调控作用。【结果】qRT-PCR检测表明,小菜蛾4龄幼虫在注射具有活性的B.thuringiensis 6 h后,Px PGRP-SA在脂肪体和血细胞中表达量迅速上升,其中脂肪体中的表达量在注射24 h后达到高峰,而在血细胞中的表达量在18 h后达到高峰。RNAi沉默小菜蛾4龄幼虫Px PGRP-SA的转录后,可显著降低小菜蛾脂肪体中cecropin,moricin-2,lysozyme和defensin 4个抗菌肽基因及Dorsal和Sptzle基因的mRNA转录水平;注射anti-Px PGRP-SA封闭小菜蛾体内Px PGRP-SA的活性后,也可降低小菜蛾脂肪体中4个抗菌肽基因的mRNA转录水平;Px PGRP-SA转录沉默后,同时导致添食B.thuringiensis的小菜蛾幼虫的存活率明显降低。【结论】Px PGRP-SA参与了小菜蛾体内抗菌肽cecropin,moricin-2,lysozyme和defensin基因的表达调控,并在免疫防御B.thuringiensis的侵染过程中起了重要的作用。     

光滑鳖甲肽聚糖识别蛋白ApPGRP的表达与功能分析

【目的】旨在研究光滑鳖甲Anatolica polita肽聚糖识别蛋白(peptidoglycan recognition proteins, PGRPs)基因ApPGRP表达模式及其对下游免疫相关基因的表达调控,以及重组蛋白ApPGRP与细菌的结合能力。【方法】构建原核表达载体pET-28a-ApPGRP,转化大肠杆菌Escherichia coli BL21(DE3),诱导表达并纯化重组蛋白His-ApPGRP,分别测定其与金黄色葡萄球菌Staphylococcus aureus和肽聚糖(peptidoglycan, PGN)的结合能力。金黄色葡萄球菌S.aureus刺激后,利用qRT-PCR检测光滑鳖甲6龄幼虫体内ApPGRP、抗菌肽基因ApAttacin2和ApAttacin1、防御素基因ApDefensin、丝氨酸蛋白酶基因ApSP和丝氨酸蛋白酶抑制剂基因ApSerpin等免疫相关基因的表达水平;采用RNAi技术沉默光滑鳖甲6龄幼虫体内ApPGRP基因的表达,并利用qRT-PCR分别检测RNAi处理以及RNAi后再用S.aureus刺激时幼虫体内上述基因的表达水平变化。【结果】通过原核表达获得了重组蛋白His-ApPGRP,其具有结合金黄色葡萄球菌和肽聚糖的能力。注射金黄色葡萄球菌后,检测的光滑鳖甲6龄幼虫免疫相关基因(ApSP除外)的表达都显著上调;RNAi沉默光滑鳖甲6龄幼虫ApPGRP后,其他免疫相关基因表达量均显著降低,其响应金黄色葡萄球菌刺激后的表达量也显著低于对照组。【结论】这些结果表明,ApPGRP在光滑鳖甲免疫防御中起着识别外源微生物,激活信号通路并调控抗菌肽表达的作用。     

三角帆蚌短型肽聚糖识别蛋白S3基因克隆及表达分析

肽聚糖识别蛋白（PGRPs）是机体先天免疫系统中的重要模式识别受体,研究对三角帆蚌的一种短型肽聚糖识别蛋白进行了克隆与表达分析。研究采用5、3 RACE技术,对高通量转录组测序所得三角帆蚌PGRPS3基因（hcPGRPS3）片段分别进行了5,3末端克隆,经拼接得到hcPGRPS3 cDNA全长序列。采用多种分子生物学软件对hcPGRPS3 cDNA全长序列进行了特征分析,实时荧光定量（qRT-PCR）检测了其组织分布,及经肽聚糖（Peptidoglycan,PGN）和脂多糖（Lipopolysaccharide,LPS）刺激后其在肝胰腺中的基因表达变化。hcPGRPS3 cDNA全长1438 bp,开放阅读框为858 bp,编码285个氨基酸,预测分子量大小为32.3 ku,pH 7.0时的理论等点为7.98。序列中不存在信号肽与跨膜结构。氨基酸序列保守性分析表明,其他物种短型PGRP中,以夏威夷短尾鱿PGRP4与hcPGRPS3同源性最高（51%）。qRT-PCR检测结果显示,hcPGRPS3在性腺及肝胰腺中表达水平较高。经PGN或LPS刺激后,肝胰腺中hcPGRPS3表达水平显著上调,表明hcPGRPS3可能在机体抗菌免疫反应中发挥重要作用。     

热带爪蟾bHLH转录因子鉴定与进化分析

爪蟾是重要的生物医学模式动物。文章根据NCBI公布的热带爪蟾(Xenopus tropicalis)基因组数据,利用生物信息学方法提取和鉴定了爪蟾全基因组范围的碱性螺旋-环-螺旋(bHLH)基因信息,应用系统发生方法进行分类并做基因本体论(Gene Ontology,GO)功能富集分布分析,以期从整体上探讨爪蟾bHLH转录因子基因家族的分类及功能。结果表明,在热带爪蟾基因组数据库中发现了70个bHLH转录因子,其中69个可以分别归到6大组(A~F)的34个亚家族中,另一个为"孤儿因子"(Orphan)基因。GO富集分布统计发现有51个显著富集分布的GO注释语句,其中转录调控活性、转录调控、DNA结合、RNA代谢过程调控、DNA依赖的转录调控、转录和转录因子活性等出现频率很高,表明这些GO术语是爪蟾bHLH基因最常见的功能;许多bHLH转录因子在一些重要的发育或生理过程中发挥调控作用,如肌肉组织和器官(横纹肌、骨骼肌、眼部和咽部肌肉)的分化和发育、消化系统发育、咽部和感觉器官的发育、碱基和核苷及核酸的代谢调控、生物合成过程调控、DNA结合和蛋白质异聚化活性等。另外,还有一些重要信号通路(Signaling pathway)的GO术语显著地富集。文章还对Hes转录因子家族做了进化分析。这些结果为热带爪蟾bHLH基因的进一步研究打下了很好的基础。     

A peptidoglycan recognition protein from Sciaenops ocellatus is a zinc amidase and a bactericide with a substrate range limited to Gram-positive bacteria

Peptidoglycan recognition proteins (PGRPs) are a family of innate immune molecules that recognize bacterial peptidoglycan. PGRPs are highly conserved in invertebrates and vertebrates including fish. However, the biological function of teleost PGRP remains largely uninvestigated. In this study, we identified a PGRP homologue, SoPGLYRP-2, from red drum (Sciaenops ocellatus) and analyzed its activity and potential function. The deduced amino acid sequence of SoPGLYRP-2 is composed of 482 residues and shares 46-94% overall identities with known fish PGRPs. SoPGLYRP-2 contains at the C-terminus a single zinc amidase domain with conserved residues that form the catalytic site. Quantitative RT-PCR analysis detected SoPGLYRP-2 expression in multiple tissues, with the highest expression occurring in liver and the lowest expression occurring in brain. Experimental bacterial infection upregulated SoPGLYRP-2 expression in kidney, spleen, and liver in time-dependent manners. To examine the biological activity of SoPGLYRP-2, purified recombinant proteins representing the intact SoPGLYRP-2 (rSoPGLYRP-2) and the amidase domain (rSoPGLYRP-AD) were prepared from Escherichia coli. Subsequent analysis showed that rSoPGLYRP-2 and rSoPGLYRP-AD (i) exhibited comparable Zn²⁺-dependent peptidoglycan-lytic activity and were able to recognize and bind to live bacterial cells, (ii) possessed bactericidal effect against Gram-positive bacteria and slight bacteriostatic effect against Gram-negative bacteria, (iii) were able to block bacterial infection into host cells. These results indicate that SoPGLYRP-2 is a zinc-dependent amidase and a bactericide that targets preferentially at Gram-positive bacteria, and that SoPGLYRP-2 is likely to play a role in host innate immune defense during bacterial infection.     

非洲爪蟾BAFF及其信号通路相关基因的比较生物信息学分析

目的:对非洲爪蟾BAFF和BAFF信号通路相关基因进行了分析.方法:采用生物信息学方法对两栖类重要的模式生物-非洲爪蟾的基因组和EST数据库进行分析.结果:非洲爪蟾BAFF cDNA全长为557 bp,编码218个氨基酸.与人BAFF序列相似性为37.5％.该文一共得到了14个BAFF信号通路相关基因.通过与人BAFF信号通路进行比较,对非洲爪蟾这14个BAFF信号通路相关基因进行了分析.结论:BAFF和BAFF信号通路在进化过程中较为保守,这为进一步研究低等脊椎动物BAFF功能和信号通路具有重要的指导作用.     

Crystal structure of human peptidoglycan recognition protein S (PGRP-S) at 1.70 A resolution

Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors of the innate immune system that bind peptidoglycans (PGNs) of bacterial cell walls. These molecules, which are highly conserved from insects to mammals, contribute to host defense against infections by both Gram-positive and Gram-negative bacteria. Here, we present the crystal structure of human PGRP-S at 1.70A resolution. The overall structure of PGRP-S, which participates in intracellular killing of Gram-positive bacteria, is similar to that of other PGRPs, including Drosophila PGRP-LB and PGRP-SA and human PGRP-Ialpha. However, comparison with these PGRPs reveals important differences in both the PGN-binding site and a groove formed by the PGRP-specific segment on the opposite face of the molecule. This groove, which may constitute a binding site for effector or signaling proteins, is less hydrophobic and deeper in PGRP-S than in PGRP-IalphaC, whose PGRP-specific segments vary considerably in amino acid sequence. By docking a PGN ligand into the PGN-binding cleft of PGRP-S based on the known structure of a PGRP-Ialpha-PGN complex, we identified potential PGN-binding residues in PGRP-S. Differences in PGN-contacting residues and interactions suggest that, although PGRPs may engage PGNs in a similar mode, structural differences exist that likely regulate the affinity and fine specificity of PGN recognition.     

Molecular cloning and mRNA expression of two peptidoglycan recognition protein (PGRP) genes from mollusk Solen grandis

Peptidoglycan recognition proteins (PGRPs) play crucial role in innate immunity for both invertebrates and vertebrates, owing to their prominent ability in detecting and eliminating invading bacteria. In the present study, two short PGRPs from mollusk Solen grandis (designated as SgPGRP-S1 and SgPGRP-S2) were identified, and their expression patterns, both in tissues and toward three PAMPs stimulation, were then characterized. The full-length cDNA of SgPGRP-S1 and SgPGRP-S2 was 1672 and 1285 bp, containing an open reading frame (ORF) of 813 and 426 bp, respectively, and deduced amino acid sequences showed high similarity to other members of PGRP superfamily. Both SgPGRP-S1 and SgPGRP-S2 encoded a PGRP domain. The motif of Zn²⁺ binding sites and amidase catalytic sites were well conserved in SgPGRP-S1, but partially conserved in SgPGRP-S2. The two PGRPs exhibited different tissue expression pattern. SgPGRP-S1 was highly expressed in muscle and hepatopancreas, while SgPGRP-S2 was highly in gill and mantle. The mRNA expression of SgPGRP-S1 could be induced acutely by stimulation of PGN, and also moderately by β-1,3-glucan, but not by LPS, while expression of SgPGRP-S2 was significantly up-regulated (P < 0.01) when S. grandis was stimulated by all the three PAMPs, though the expression levels were relatively lower than SgPGRP-S1. Our results suggested SgPGRP-S1 and SgPGRP-S2 could serve as pattern recognition receptors (PRRs) involved in the immune recognition of S. grandis, and they might perform different functions in the immune defense against invaders.     

肽聚糖识别蛋白PGRP-SC在家蝇肠道免疫中的功能分析

【目的】探究家蝇Musca domestica幼虫肽聚糖识别蛋白PGRP-SC在应对肠道入侵细菌中的作用。【方法】通过投喂表达Md PGRP-SC dsRNA的宿主大肠杆菌Escherichia coli干扰家蝇初孵幼虫Md PGRP-SC基因表达,并利用q PCR技术检测干扰效果;在荧光显微镜下观察干扰后试虫肠道内表达绿色荧光蛋白(green fluorescent protein,GFP)的大肠杆菌存活情况,同时通过比色法检测干扰后试虫肠道组织内的H2O2含量,利用q PCR检测试虫肠道内抗菌肽基因的表达情况。【结果】q PCR结果显示,投喂干扰24 h后家蝇幼虫体内Md PGRP-SC基因的相对表达量显著降低。对PGRP-SC干扰组和GFP对照组试虫投喂表达GFP的大肠杆菌,30 min后干扰组家蝇肠道内荧光亮度弱于GFP对照组。同时,干扰组试虫肠道内H2O2含量与空白对照或GFP对照组相比均没有显著差异,而干扰组中抗菌肽表达水平显著高于GFP对照组。【结论】Md PGRP-SC在控制家蝇幼虫肠道免疫敏感程度中起作用。     

Molecular cloning and expression of a major surface protein (the 75-kDa protein) of Porphyromonas (Bacteroides) gingivalis in Escherichia coli

A major immunodominant surface protein (the 75-kDa protein) of Porphyromonas (Bacteroides) gingivalis 381 has been purified and its amino-terminal amino acid sequence has been determined. Using oligonucleotide probes corresponding to the sequence, we identified a recombinant plasmid clone carrying a single 4.2-kb BamHI fragment from pUC19 libraries of P. gingivalis. The BamHI fragment transferred to the bacteriophage T7 RNA polymerase/promoter expression vector system produced a slightly larger (77-kDa) protein, a precursor form, immunoreactive to the antibody against the 75-kDa protein, suggesting that the cloned DNA fragment probably carried an entire gene for the 75-kDa protein. Genomic Southern analysis revealed a single copy of the 75-kDa protein gene per genome among all P. gingivalis strains tested, and that no homologous genes are present in other black-pigmented Bacteroides species. These observations suggest that the 75-kDa protein gene may be useful as a specific DNA probe to classify or to detect this organism.