共查询到20条相似文献,搜索用时 0 毫秒
1.
The type VI protein secretion system contributes to biofilm formation and seed‐to‐seedling transmission of Acidovorax citrulli on melon
下载免费PDF全文

Yanli Tian Yuqiang Zhao Xinrong Wu Fengquan Liu Baishi Hu Ronald R. Walcott 《Molecular Plant Pathology》2015,16(1):38-47
The type VI protein secretion system (T6SS) is essential for the virulence of several Gram‐negative bacteria. In this study, we identified a T6SS gene cluster in Acidovorax citrulli, a plant‐pathogenic bacterium that causes bacterial fruit blotch (BFB) of cucurbits. One T6SS cluster, of approximately 25 kb in length and comprising 17 genes, was found in the A. citrulli AAC00‐1 genome. Seventeen A. citrulli mutants were generated, each with a deletion of a single T6SS core gene. There were significant differences in BFB seed‐to‐seedling transmission between wild‐type A. citrulli strain, xjl12, and ΔvasD, ΔimpK, ΔimpJ and ΔimpF mutants (71.71%, 9.83%, 8.41%, 7.15% and 5.99% BFB disease index, respectively). In addition, we observed that these four mutants were reduced in melon seed colonization and biofilm formation; however, they were not affected in virulence when infiltrated into melon seedling tissues. There were no significant differences in BFB seed‐to‐seedling transmission, melon tissue colonization and biofilm formation between xjl12 and the other 13 T6SS mutants. Overall, our results indicate that T6SS plays a role in seed‐to‐seedling transmission of BFB on melon. 相似文献
2.
Nobutaka Numoto Akiko Kita Kunio Miki 《Acta Crystallographica. Section D, Structural Biology》2004,60(5):810-815
The V‐type H+‐ATPases are similar to the F‐type ATP synthases in their structure and functional mechanism. They hydrolyze ATP coupled with proton translocation across a membrane, but in some archaea and eubacteria they also synthesize ATP in the reverse reaction. The C subunit is one of the components of the membrane‐bound V0 moiety of V‐type ATPases. The C subunit of V‐type H+‐ATPase from Thermus thermophilus was crystallized in a monoclinic form and its crystal structure was determined at 1.85 Å resolution by the MAD method using selenomethionyl protein. The structure has a cone (tapered cylinder) shape consisting of only two types of helix (long and short) as secondary‐structure elements. The molecule is divided into three similar domains, each of which has essentially the same topology. On the basis of the structural features and molecular‐surface charge distribution, it is suggested that the bottom side of the C subunit is a possible binding site for the V0 proteolipid L‐subunit ring and that the C subunit might function as a spacer unit between the proteolipid L‐subunit ring and the rotating V1 central shaft. 相似文献
3.
Martin Sagermann Brian W. Matthews 《Acta Crystallographica. Section D, Structural Biology》2000,56(4):475-477
The expression and crystallization of the VMA13p subunit of the vacuolar proton‐translocating ATPase (V‐ATPase) of Saccharomyces cerevisiae is described. This 478 amino‐acid subunit is essential for activity but not for the assembly of this multisubunit complex. The protein has been recombinantly overexpressed in Escherichia coli and purified. Diffraction‐quality crystals have been obtained using the hanging‐drop vapor‐diffusion method with ammonium sulfate as precipitant. Several different crystal forms were obtained. The most suitable crystal form for crystallographic characterization belongs to space group P3121 or its enantiomorph, with unit‐cell parameters a = b = 118.8, c = 119.3 Å. Using an in‐house X‐ray source, the crystals diffract to about 3.5 Å resolution under rapidly frozen conditions. 相似文献
4.
Vallejos JR Micheletti M Brorson KA Moreira AR Rao G 《Biotechnology and bioengineering》2012,109(9):2295-2305
During the past decade, novel disposable cell culture vessels (generally referred to as Process Scouting Devices or PSDs) have become increasingly popular for laboratory scale studies and seed culture generation. However, the lack of engineering characterization and online monitoring tools for PSDs makes it difficult to elucidate their oxygen transfer capabilities. In this study, a mass transfer characterization (kLa) of sensor enabled static and rocking T‐flasks is presented and compared with other non‐instrumented PSDs such as CultiFlask 50®, spinner flasks, and SuperSpinner D 1000®. We have also developed a mass transfer empirical correlation that accounts for the contribution of convection and diffusion to the volumetric mass transfer coefficient (kLa) in rocking T‐flasks. We also carried out a scale‐down study at matched kLa between a rocking T75‐flask and a 10 L (2 L filling volume) wave bioreactor (Cultibag®) and we observed similar DO and pH profiles as well as maximum cell density and protein titer. However, in this scale‐down study, we also observed a negative correlation between cell growth and protein productivity between the rocking T‐flask and the wave bioreactor. We hypothesize that this negative correlation can be due to hydrodynamic stress difference between the rocking T‐flask and the Cultibag. As both cell culture devices share key similarities such as type of agitation (i.e., rocking), oxygen transfer capabilities (i.e., kLa) and disposability, we argue that rocking T‐flasks can be readily integrated with wave bioreactors, making the transition from research‐scale to manufacturing‐scale a seamless process. Biotechnol. Bioeng. 2012;109: 2295–2305. © 2012 Wiley Periodicals, Inc. 相似文献
5.
Abstract Analysis was performed of the richness and abundance of woody species, forbs, and annual grasses in the easily germinating soil seed bank (henceforth seed bank) in a mediterranean shrubland of central Chile. The effects of successional development after fire and by microsite type (underneath or outside shrubs) on the density of seeds in the soil, and the relationship of species abundance in the seed bank with its abundance in the above‐ground vegetation was examined. A total of 64 plant species were recorded in the seed bank, of which 44 were annual or biannual. Eight species were woody and another eight were perennial herbs. Four could not be identified to species level. The highest richness of established herbaceous species was recorded in late spring, with 31 species. The regeneration of the herbaceous vegetation was driven by the annual production of seeds and by a reserve of short‐lived propagules in the soil. Density of all germinating seeds was significantly higher during late spring and late summer. Density of grass seeds was greater during late spring, while that of all other species was greater during late summer. Annual grass seeds accumulated in higher proportion at exposed microsites rather than under woody canopy, and in young (< 5 years old) and intermediate‐age patches (10–20 years old) rather than in mature vegetation (30–50 years old). The abundance of established woody and herb species was uncorrelated with that of the seed bank. 相似文献
6.
Hebatallah A. Wagdy Rasha S. Hanafi Rasha M. El‐Nashar Hassan Y. Aboul‐Enein 《Chirality》2013,25(9):506-513
Pharmaceutical companies worldwide tend to apply chiral chromatographic separation techniques in their mass production strategy rather than asymmetric synthesis. The present work aims to investigate the predictability of chromatographic behavior of enantiomers using DryLab HPLC method development software, which is typically used to predict the effect of changing various chromatographic parameters on resolution in the reversed phase mode. Three different types of chiral stationary phases were tested for predictability: macrocyclic antibiotics‐based columns (Chirobiotic V and T), polysaccharide‐based chiral column (Chiralpak AD‐RH), and protein‐based chiral column (Ultron ES‐OVM). Preliminary basic runs were implemented, then exported to DryLab after peak tracking was accomplished. Prediction of the effect of % organic mobile phase on separation was possible for separations on Chirobiotic V for several probes: racemic propranolol with 97.80% accuracy; mixture of racemates of propranolol and terbutaline sulphate, as well as, racemates of propranolol and salbutamol sulphate with average 90.46% accuracy for the effect of percent organic mobile phase and average 98.39% for the effect of pH; and racemic warfarin with 93.45% accuracy for the effect of percent organic mobile phase and average 99.64% for the effect of pH. It can be concluded that Chirobiotic V reversed phase retention mechanism follows the solvophobic theory. Chirality 25:506–513, 2013. © 2013 Wiley Periodicals, Inc. 相似文献
7.
8.
ELIZABETH F. VANN 《American anthropologist》2006,108(2):286-296
In this article, I address the saliency of the concept of "authenticity" in contexts of international law and anthropological inquiry. Using my research findings in Ho Chi Minh City (HCMC), Vietnam, I show that although Vietnamese shoppers distinguish between what they term real and fake goods, they do not share with foreign corporations and international trade organizations a preoccupation with product and brand authenticity. To make this point, I describe four types of goods—model goods, mimic goods, real goods, and fake goods—employed by shoppers in HCMC, and discuss why they have little in common with notions of "authenticity" and "ownership" inherent in international standards of intellectual property. I argue that these conceptual differences in the commercial sphere challenge claims about the universal applicability of intellectual property rights laws and also encourage anthropologists to ask whether authenticity is always a useful tool of cross-cultural understanding. 相似文献
9.
随着世界经济全球化步伐的加快, 知识产权的重要性凸显。高校是知识产权意识和能力教育的主战场。我国现有知识产权教育与专业的密切程度急需提高。文章结合全球首个CRISPR/Cas9专利权的授权公布和作者授课经历, 提出了一种新的知识产权普及教育模式, 将知识产权教育分为启蒙教育和深入研修两个阶段。第一阶段将知识产权教育与专业课课程无缝整合, 后一阶段主要针对有志于发展成为知识产权专业人才的学生。我们认为这种教学模式的推广将解决现有知识产权教育中教材的欠缺以及教师的不足, 有利于知识产权意识在生物医学等理工科学生的普及。遗传学在生物医学中具有特别重要的地位, 因此, 文章以遗传学最近的热点技术之一——基于CRISPR/Cas的基因组编辑新工具为例进行阐述。CRISPR/Cas从最初的微生物遗传学发现到成为基因组编辑的重要工具, 贯穿了基础研究转化为关键技术的全过程, 可以很好体现生物医学相关的知识产权教育的精髓。 相似文献
10.
Bruna Miralpeix Maite Sabalza Richard M. Twyman Teresa Capell Paul Christou 《Plant biotechnology journal》2014,12(2):117-134
The do‐it‐yourself patent search is a useful alternative to professional patent analysis particularly in the context of publicly funded projects where funds for IP activities may be limited. As a case study, we analysed patents related to the engineering of terpenoid indole alkaloid (TIA) metabolism in plants. We developed a focused search strategy to remove redundancy and reduce the workload without missing important and relevant patents. This resulted in the identification of approximately 50 key patents associated with TIA metabolic engineering in plants, which could form the basis of a more detailed freedom‐to‐operate analysis. The structural elements of this search strategy could easily be transferred to other contexts, making it a useful generic model for publicly funded research projects 1 . 相似文献
11.
Patricia M. Holmes 《Austral ecology》2002,27(1):110-120
South African fynbos vegetation is threatened on a large scale by invasive woody plants. A major task facing nature conservation managers is to restore invaded areas. The aim of this study was to determine the restoration potential of fynbos following dense invasion by the Australian tree Acacia saligna. The impacts of dense invasion on seed‐bank composition and depth distribution were investigated to determine which fynbos guilds and species have the most persistent seed‐banks. Soil samples were excavated at three different depths for invaded and uninvaded vegetation at two sand plain and mountain fynbos sites. Seed‐banks were determined using the seedling emergence approach. Invasion caused a significant reduction in seed‐bank density and richness at all sites. There was a significant, but smaller, reduction in seed‐bank density and richness with soil depth at three sites. Seed‐bank composition and guild structure changed following invasion. Low persistence of long‐lived obligate seeders in sand plain fynbos seed‐banks indicates that this vegetation type will be difficult to restore from the seed‐bank alone following alien clearance. The dominance of short‐lived species, especially graminoids, forbs and ephemeral geophytes, suggests that regenerating vegetation will develop into a herbland rather than a shrubland. It is recommended that seed collecting and sowing form part of the restoration plan for densely invaded sand plain sites. As seed density remained higher towards the soil surface following invasion, there is no general advantage in applying a mechanical soil disturbance treatment. However, if the shallow soil seed‐bank becomes depleted, for example following a hot fire through dense alien slash, a soil disturbance treatment should be given to exhume the deeper viable seed‐bank and promote recruitment. 相似文献
12.
Rowena L. Long Marta J. Gorecki Michael Renton John K. Scott Louise Colville Danica E. Goggin Lucy E. Commander David A. Westcott Hillary Cherry William E. Finch‐Savage 《Biological reviews of the Cambridge Philosophical Society》2015,90(1):31-59
Seed persistence is the survival of seeds in the environment once they have reached maturity. Seed persistence allows a species, population or genotype to survive long after the death of parent plants, thus distributing genetic diversity through time. The ability to predict seed persistence accurately is critical to inform long‐term weed management and flora rehabilitation programs, as well as to allow a greater understanding of plant community dynamics. Indeed, each of the 420000 seed‐bearing plant species has a unique set of seed characteristics that determine its propensity to develop a persistent soil seed bank. The duration of seed persistence varies among species and populations, and depends on the physical and physiological characteristics of seeds and how they are affected by the biotic and abiotic environment. An integrated understanding of the ecophysiological mechanisms of seed persistence is essential if we are to improve our ability to predict how long seeds can survive in soils, both now and under future climatic conditions. In this review we present an holistic overview of the seed, species, climate, soil, and other site factors that contribute mechanistically to seed persistence, incorporating physiological, biochemical and ecological perspectives. We focus on current knowledge of the seed and species traits that influence seed longevity under ex situ controlled storage conditions, and explore how this inherent longevity is moderated by changeable biotic and abiotic conditions in situ, both before and after seeds are dispersed. We argue that the persistence of a given seed population in any environment depends on its resistance to exiting the seed bank via germination or death, and on its exposure to environmental conditions that are conducive to those fates. By synthesising knowledge of how the environment affects seeds to determine when and how they leave the soil seed bank into a resistance–exposure model, we provide a new framework for developing experimental and modelling approaches to predict how long seeds will persist in a range of environments. 相似文献
13.
Youssef Elamine Verenice Torres-Salas Alima Messai Julio Girón-Calle Manuel Alaiz Javier Vioque 《化学与生物多样性》2021,18(2):e2000827
Vicia palaestina Boiss. is an annual herb that grows in dry areas of eastern Mediterranean countries. It belongs to section Cracca subgenus Vicilla, which is characterized by having a high content in the non-protein amino acid canavanine. The seeds from some of these vetches are also rich in lectins. The purification and characterization of a single-chain lectin from the seeds of V. palaestina is described here. This lectin was the most abundant protein in albumin extracts. It has affinity for the glycoconjugate N-acetylgalactosamine and inhibits proliferation of the cancerous Caco-2 and THP-1 cell lines. In addition to their high nutritional value, the seeds from V. palaestina represent a source of lectins with health promoting and pharmacological potential because of their antiproliferative activity. 相似文献
14.
Mengyu Zhang Yuanyuan Wu Yahan Qin Jie Shen Zhao Cui Fan Lei Ke Zhang Baiqing Li Shujuan Liang Meiyu Peng 《Cell biochemistry and function》2024,42(1):e3929
Myeloid-derived suppressor cells (MDSC) are a group of immature inhibitory cells of bone marrow origin. Human γδ T cells (mainly Vγ9Vδ2 T cells) have emerged as dominant candidates for cancer immunotherapy because of their unique recognition pattern and broad killing activity against tumor cells. Intestinal mucosal intraepithelial lymphocytes are almost exclusively γδ T cells, so it plays an important role in inhibiting the development of colorectal cancer. In this study, we investigated the effects and molecular mechanism of human MDSC on anticolorectal cancer cells activity of Vγ9Vδ2 T cells. Our results suggested that MDSC can reduce the NKG2D expression of Vγ9Vδ2 T cells through direct cell–cell contact, which is associated with membrane-type transforming growth factor-β. In contrast, MDSC can increase Vγ9Vδ2 T cells activation and production of IFN-γ, perforin, Granzyme B through direct cell–cell contact. This may be related to the upregulation of T-bet in Vγ9Vδ2 T cells by MDSC. However, MDSC had a dominant negative regulatory effect on the anticolorectal cancer cells activity of Vγ9Vδ2 T cells. Our study provides a theoretical basis for the immune regulatory function of human MDSC on γδ T cells. This will be conducive to the clinical development of a new antitumor therapy strategy. 相似文献
15.
Bioprospecting is the exploration of biodiversity for new resources of social and commercial value. It is carried out by a wide range of established industries such as pharmaceuticals, manufacturing and agriculture as well as a wide range of comparatively new ones such as aquaculture, bioremediation, biomining, biomimetic engineering and nanotechnology. The benefits of bioprospecting have emerged from such a wide range of organisms and environments worldwide that it is not possible to predict what species or habitats will be critical to society, or industry, in the future. The benefits include an unexpected variety of products that include chemicals, genes, metabolic pathways, structures, materials and behaviours. These may provide physical blueprints or inspiration for new designs. Criticism aimed at bioprospecting has been addressed, in part, by international treaties and legal agreements aimed at stopping biopiracy and many activities are now funded by agencies that require capacity-building and economic benefits in host countries. Thus, much contemporary bioprospecting has multiple goals, including the conservation of biodiversity, the sustainable management of natural resources and economic development. Ecologists are involved in three vital ways: first, applying ecological principles to the discovery of new resources. In this context, natural history becomes a vast economic database. Second, carrying out field studies, most of them demographic, to help regulate the harvest of wild species. Third, emphasizing the profound importance of millions of mostly microscopic species to the global economy. 相似文献
16.
Keizers PH Schraven LH de Graaf C Hidestrand M Ingelman-Sundberg M van Dijk BR Vermeulen NP Commandeur JN 《Biochemical and biophysical research communications》2005,338(2):1065-1074
Based on sequence alignments and homology modeling, threonine 309 in cytochrome P450 2D6 (CYP2D6) is proposed to be the conserved I-helix threonine, which is supposed to be involved in dioxygen activation by CYPs. The T309V mutant of CYP2D6 displayed a strong shift from O-dealkylation to N-dealkylation reactions in oxidation of dextromethorphan and 3,4-methylenedioxymethylamphetamine. This may be explained by an elevated ratio of hydroperoxo-iron to oxenoid-iron of the oxygenating species. In consistence, using cumene hydroperoxide, which directly forms the oxenoid-iron, the T309V mutant again selectively catalyzed the O-dealkylation reactions. The changed ratio of oxygenating species can also explain the decreased activity and changed regioselectivity that were observed in 7-methoxy-4-(aminomethyl)-coumarin and bufuralol oxidation, respectively, by the T309V mutant. Interestingly, the T309V mutant always showed a significantly increased, up to 75-fold, higher activity compared to that of the wild-type when using cumene hydroperoxide. These results indicate that T309 in CYP2D6 is involved in maintaining the balance of multiple oxygenating species and thus influences substrate and regioselectivity. 相似文献
17.
Most obligate seeder species build up a soil seed bank that is associated with massive seed germination in the year immediately after a fire. These species are also shade‐intolerant and disappear when vegetation cover closes, creating unsuitable conditions for seedling recruitment. The only way for these plants to expand their populations is when habitats suitable for seedling recruitment arise (i.e. in years immediately after a fire). However, short primary seed dispersal of obligate seeders does not allow these plants to colonise the suitable habitats, and these habitats can only be colonised by secondary seed dispersion. We hypothesised that Fumana ericoides, an obligate‐seeding small shrub, not only establishes abundantly in the first year after fire, but also expands its local range in the following years due to secondary dispersal by ants while suitable habitats are still available. We tested this hypothesis using experimental studies and a simulation model of potential population expansion in a recently burned area. Results showed that F. ericoides not only established prolifically in the year immediately after fire, but was also able to recruit new individuals and expand its population in the years following the fire, despite a low germination rate and short primary seed dispersal. Ant‐mediated seed dispersal and availability of suitable habitats were key factors in this phenomenon: ants redistributed seeds in suitable habitats while they were available, which accelerated the expansion of F. ericoides because new plants established far away from the core population. 相似文献
18.
描述了自甘肃南部发现的葡萄属一新种,文县蘡薁Vitis wenxianensis W.T.Wang。此新种与特产浙江的三出蘡薁V.bryoniifolia Bunge var.ternata(W.T.Wang)C.L.Li有很近的亲缘关系,二者可能是由蘡薁V.bryoniifolia Bunge衍生而出的一对姊妹群。基于上述认识,将三出蘡薁由变种提升至种的等级,但由于存在一个于1871年发表的种名V.ternata Baker,因此,必须为三出蘡薁拟定一新名。 相似文献
19.
LAURIE E. TWIGG TIM J. LOWE CATHERINE M. TAYLOR MIKE C. CALVER GARY R. MARTIN CLAIRE STEVENSON RIC HOW 《Austral ecology》2009,34(7):805-820
The potential for seed‐eating birds to spread viable seeds was investigated using captive‐feeding trials to determine seed preference, passage time through the gut, and viability of passed seeds for bronzewing pigeons (Phaps chalcoptera), peaceful doves (Geopelia striata), crested pigeons (Ocyphaps lophotes), Senegal doves (Streptopelia senegalensis), zebra finches (Taeniopygia guttata), black ducks (Anas superciliosa) and wood ducks (Chenonetta jubata). Test seeds were bladder clover (Trifolium spumosum), crimson clover (Trifolium incarnatum), gorse (Ulex europaeus), canola (Brassica napus) and red panicum (Setaria italica). Their consumption was compared with that of commercial seed mixes. Although all test seeds were recognizable foods, their consumption usually decreased in the presence of other foods, except for canola, where consumption rates were maintained. Hard‐seeded bladder clover was the only species where viable seeds were passed by obligate seedeaters. In contrast, viable seeds of canola and gorse were passed by seed‐eating omnivorous/herbivorous ducks, although the germination of passed seeds (42%) was reduced significantly compared with that of untreated control seed (67%). Field validation with wild, urban bronzewings and Australian magpies (Gymnorhina tibicen) offered canola and commercial seed yielded similar outcomes, with a range of viable seeds recovered from magpie soft pellets. Mean seed passage time in captive birds ranged from 0.5 to 4.3 h for all test seeds and commercial seed mixes, suggesting that these bird species may potentially disperse seed over moderate distances. Despite the low probability of individual birds spreading viable seed, the high number of birds feeding in the wild suggests that the potential for granivorous and seed‐eating omnivorous birds to disperse viable seeds cannot be discounted, particularly if exozoochorous dispersal is also considered. 相似文献
20.
Claudia M. Campos Valeria E. Campos Stella M. Giannoni Daniela Rodríguez Soledad Albanese Mónica I. Cona 《Austral ecology》2017,42(1):113-119
Understanding the functional role of animal species in seed dispersal is central to determining how biotic interactions could be affected by anthropogenic drivers. In the Monte Desert, mammals play different functional roles in Prosopis flexuosa seed dispersal, acting as opportunistic frugivores (endozoochorous medium‐sized and large mammals) or seed hoarders (some small sigmodontine rodents). Our objective was assessing the functional role of Microcavia australis, a small hystricognathi rodent, in the fruit removal and seed deposition stages of P. flexuosa seed dispersal, compared to sympatric sigmodontine rodents. In situ, we quantified fruit removal by small rodents during non‐fruiting and fruiting periods, and determined the distance seeds were transported, particularly by M. australis. In laboratory experiments, we analysed how M. australis stores seeds (through scatter‐ or larder‐hoarding) and how many seeds are left in caches as living seeds, relative to previous data on sigmodontine rodents. To conduct field studies, we established sampling stations under randomly chosen P. flexuosa trees at the Ñacuñán Man and Biosphere Reserve. We analysed fruit removal by small rodents and seed dispersal distance by M. australis using camera traps focused on P. flexuosa fruits covered with wire screen, which only allowed entry of small animals. In laboratory trials, we provided animals with a known number of fruits and assessed seed conditions after removal. Small rodents removed 75.7% of fruit supplied during the non‐fruiting period and 53.2% during the fruiting period. Microcavia australis and Graomys griseoflavus were the main fruit removers. Microcavia australis transported seeds to a mean distance of 462 cm and cached seeds mainly in scatter‐hoards, similarly as Eligmodontia typus. All transported seeds were left in fruit segments or covered only by the endocarp, never as predated seeds. Microcavia australis disperses P. flexuosa seeds by carrying fruits away from a source to consume them and then by scatter‐hoarding fruits and seeds. 相似文献