Leaf Litter Fuels Methanogenesis Throughout Decomposition in a Forested Peatland

Decomposing leaf litter is a large supply of energy and nutrients for soil microorganisms. How long decaying leaves continue to fuel anaerobic microbial activity in wetland ecosystems is poorly understood. Here, we compare leaf litter from 15 tree species with different growth forms (angiosperms and gymnosperms, deciduous, and longer life span), using litterbags positioned for up to 4 years in a forested peatland in New York State. Periodically, we incubated partially decayed residue per species with fresh soil to assess its ability to fuel microbial methane (CH₄) production and concomitant anaerobic carbon dioxide (CO₂) production. Decay rates varied by leaf type: deciduous angiosperm > evergreen gymnosperm > deciduous gymnosperm. Decay rates were slower in leaf litter with a large concentration of lignin. Soil with residue of leaves decomposed for 338 days had greater rates of CH₄ production (5.8 µmol g^?1 dry mass d^?1) than less decomposed (<0.42 µmol g^?1 dry mass d^?1) or more decomposed (2.1 µmol g^?1 dry mass d^?1) leaf residue. Species-driven differences in their ability to fuel CH₄ production were evident throughout the study, whereas concomitant rates of CO₂ production were more similar among species and declined with degree of decomposition. Methane production rates exhibited a positive correlation with pectin and the rate of pectin decomposition. This link between leaf litter decay rates, biochemical components in leaves, and microorganisms producing greenhouse gases should improve predictions of CH₄ production in wetlands.     

Fungi on Leaf Blades of <Emphasis Type="Italic">Phragmites australis</Emphasis> in a Brackish Tidal Marsh: Diversity,Succession, and Leaf Decomposition

Although fungi are known to colonize and decompose plant tissues in various environments, there is scanty information on fungal communities on wetland plants, their relation to microhabitat conditions, and their link to plant litter decomposition. We examined fungal diversity and succession on Phragmites australis leaves both attached to standing shoots and decaying in the litter layer of a brackish tidal marsh. Additionally, we followed changes in fungal biomass (ergosterol), leaf nitrogen dynamics, and litter mass loss on the sediment surface of the marsh. Thirty-five fungal taxa were recorded by direct observation of sporulation structures. Detrended correspondence analysis and cluster analysis revealed distinct communities of fungi sporulating in the three microhabitats examined (middle canopy, top canopy, and litter layer), and indicator species analysis identified a total of seven taxa characteristic of the identified subcommunities. High fungal biomass developed in decaying leaf blades attached to standing shoots, with a maximum ergosterol concentration of 548 ± 83 μg g^–1 ash-free dry mass (AFDM; mean ± SD). When dead leaves were incorporated in the litter layer on the marsh surface, fungi experienced a sharp decline in biomass (to 191 ± 60 μg ergosterol g^–1 AFDM) and in the number of sporulation structures. Following a lag phase, species not previously detected began to sporulate. Leaves placed in litter bags on the sediment surface lost 50% of their initial AFDM within 7 months (k = −0.0035 day^–1) and only 21% of the original AFDM was left after 11 months. Fungal biomass accounted for up to 34 ± 7% of the total N in dead leaf blades on standing shoots, but to only 10 ± 4% in the litter layer. These data suggest that fungi are instrumental in N retention and leaf mass loss during leaf senescence and early aerial decay. However, during decomposition on the marsh surface, the importance of living fungal mass appears to diminish, particularly in N retention, although a significant fraction of total detrital N may remain associated with dead hyphae.     

Transport of Carbon and Nitrogen Between Litter and Soil Organic Matter in a Northern Hardwood Forest

We used sugar maple litter double-labeled with ¹³C and ¹⁵N to quantify fluxes of carbon (C) and nitrogen (N) between litter and soil in a northern hardwood forest and the retention of litter C and N in soil. Two cohorts of litter were compared, one in which the label was preferentially incorporated into non-structural tissue and the other structural tissue. Loss of ¹³C from this litter generally followed dry mass and total C loss whereas loss of ¹⁵N (20–30% in 1 year) was accompanied by large increases of total N content of this decaying litter (26–32%). Enrichment of ¹³C and ¹⁵N was detected in soil down to 10–15 cm depth. After 6 months of decay (November–May) 36–43% of the ¹³C released from the litter was recovered in the soil, with no differences between the structural and non-structural labeled litter. By October the percentage recovery of litter ¹³C in soil was much lower (16%). The C released from litter and remaining in soil organic matter (SOM) after 1 year represented over 30 g C m⁻² y⁻¹ of SOM accumulation. Recovery of litter ¹⁵N in soil was much higher than for C (over 90%) and in May ¹⁵N was mostly in organic horizons whereas by October it was mostly in 0–10 cm mineral soil. A small proportion of this N was recovered as inorganic N (2–6%). Recovery of ¹⁵N in microbial biomass was higher in May (13–15%) than in October (about 5%). The C:N ratio of the SOM and microbial biomass derived from the labeled litter was much higher for the structural than the non-structural litter and for the forest floor than mineral SOM, illustrating the interactive role of substrates and microbial activity in regulating the C:N stoichiometry of forest SOM formation. These results for a forest ecosystem long exposed to chronically high atmospheric N deposition (ca. 10 kg N ha⁻¹ y⁻¹) suggest possible mechanisms of N retention in soil: increased organic N leaching from fresh litter and reduced fungal transport of N from soil to decaying litter may promote N stabilization in mineral SOM even at a relatively low C:N ratio.     

The Estimated Impact of Fungi on Nutrient Dynamics During Decomposition of Phragmites australis Leaf Sheaths and Stems

Decomposition of culms (sheaths and stems) of the emergent macrophyte Phragmites australis (common reed) was followed for 16 months in the litter layer of a brackish tidal marsh along the river Scheldt (the Netherlands). Stems and leaf sheaths were separately analyzed for mass loss, litter-associated fungal biomass (ergosterol), nutrient (N and P), and cell wall polymer concentrations (cellulose and lignin). The role of fungal biomass in litter nutrient dynamics was evaluated by estimating nutrient incorporation within the living fungal mass. After 1 year of standing stem decay, substantial fungal colonization was found. This corresponded to an overall fungal biomass of 49 ± 8.7 mg g⁻¹ dry mass. A vertical pattern of fungal colonization on stems in the canopy is suggested. The litter bag experiment showed that mass loss of stems was negligible during the first 6 months, whereas leaf sheaths lost almost 50% of their initial mass during that time. Exponential breakdown rates were −0.0039 ± 0.0004 and −0.0026 ± 0.0003 day⁻¹ for leaf sheaths and stems, respectively (excluding the initial lag period). In contrast to the stem tissue—which had no fungal colonization—leaf sheaths were heavily colonized by fungi (93 ± 10 mg fungal biomass g⁻¹ dry mass) prior to placement in the litter layer. Once being on the sediment surface, 30% of leaf sheath's associated fungal biomass was lost, but ergosterol concentrations recovered the following months. In the stems, fungal biomass increased steadily after an initial lag period to reach a maximal biomass of about 120 mg fungal biomass g⁻¹ dry mass for both plant parts at the end of the experiment. Fungal colonizers are considered to contain an important fraction of nutrients within the decaying plant matter. Fungal N incorporation was estimated to be 64 ± 13 and 102 ± 15% of total available N pool during decomposition for leaf sheaths and stems, respectively. Fungal P incorporation was estimated to be 37 ± 9 and 52 ± 15% of total available P during decomposition for leaf sheaths and stems, respectively. Furthermore, within the stem tissue, fungi are suggested to be active immobilizers of nutrients from the external environment because fungi were often estimated to contain more than 100% of the original nutrient stock.     

Effects of Litter Inputs on N<Subscript>2</Subscript>O Emissions from a Tropical Rainforest in Southwest China

Litter inputs are expected to have a strong impact on soil N₂O efflux. This study aimed to assess the effects of the litter decomposition process and nutrient efflux from litter to soil on soil N₂O efflux in a tropical rainforest. A paired study with a control (L) treatment and a litter-removed (NL) treatment was followed for 2 years, continuously monitoring the effects of these treatments on soil N₂O efflux, fresh litter input, decomposed litter carbon (LCI) and nitrogen (LNI), soil nitrate (NO₃ ^?–N), ammonium (NH₄ ⁺–N), dissolved organic carbon (DOC), and dissolved nitrogen (DN). Soil N₂O flux was 0.48 and 0.32 kg N₂O–N ha^?1 year^?1 for the L and NL treatments, respectively. Removing the litter caused a decrease in the annual soil N₂O emission by 33%. The flux values from the litter layer were higher in the rainy season as compared to the dry season (2.10 ± 0.28 vs. 1.44 ± 0.35 μg N m^?2 h^?1). The N₂O fluxes were significantly correlated with the soil NO₃ ^?–N contents (P < 0.05), indicating that the N₂O emission was derived mainly from denitrification as well as other NO₃ ^? reduction processes. Suitable soil temperature and moisture sustained by rainfall were jointly attributed to the higher soil N₂O fluxes of both treatments in the rainy season. The N₂O fluxes from the L were mainly regulated by LCI, whereas those from the NL were dominated jointly by soil NO₃ ^? content and temperature. The effects of LCI and LNI on the soil N₂O fluxes were the greatest in the 2 months after litter decomposition. Our results show that litter may affect not only the variability in the quantity of N₂O emitted, but also the mechanisms that govern N₂O production. However, further studies are still required to elucidate the impacting mechanisms of litter decomposition on N₂O emission from tropical forests.     

Leaf growth,senescence and decomposition of Juncus maritimus Lam. in a coastal Mediterranean marsh

In this study, the growth, senescence, leaf loss and nutrient dynamics of Juncus maritimus were followed to examine litter decay in a Mediterranean coastal marsh. Decomposition was studied in dead leaves still attached to the plant and in leaves placed in litterbags (detached leaves/litter) on the sediment surface. The dynamics of fungi, meiofauna and epiphytes associated with detached litter were also followed. No significant differences were observed between decay rates in dead leaves attached to plants (0.0017 day⁻¹) and detached leaves (0.0015 day⁻¹) in litter bags. The percentage of ash-free dry weight lost was inversely proportional to the C:N and C:P ratios in plant detritus during decay, indicating N and P limitation for the decomposer community inhabiting decaying J. maritimus litter and uptake of these nutrients from the environment. Water availability and high temperatures on the sediment surface increased the density of meiofauna and epiphyton and decreased fungal biomass during the first 20 days of the experiment. The density of ciliates and nematodes in decomposing litter was inversely related to the C:N ratio and directly related to the percentage of AFDW lost. On the basis of these observations, it was concluded that meiofauna are primary colonizers of J. maritimus leaf litter.     

Nitrogen contributions from faba bean (Vicia faba L.) reliant on soil rhizobia or inoculation

Background and Aims

Understanding the impact of soil rhizobial populations and inoculant rhizobia in supplying sufficient nodulation is crucial to optimising N₂ fixation by legume crops. This study explored the impact of different rates of inoculant rhizobia and contrasting soil rhizobia on nodulation and N₂ fixation in faba bean (Vicia faba L.).

Methods

Faba beans were inoculated with one of seven rates of rhizobial inoculation, from no inoculant to 100 times the normal rate of inoculation, sown at two field sites, with or without soil rhizobia present, and their nodulation and N₂ fixation assessed.

Results

At the site without soil rhizobia, inoculation increased nodule number and increased N₂ fixation from 21 to 129 kg shoot N ha^?1, while N₂ fixation increased from 132 to 218 kg shoot N ha^?1 at the site with high background soil rhizobia. At the site without soil rhizobia, inoculation increased concentrations of shoot N from 14 to 24 mg g^?1, grain N from 32 to 45 mg g^?1, and grain yields by 1.0 Mg (metric tonne) ha^?1. Differences in nodulation influenced the contributions of fixed N to the system, which varied from the net removal of 20 kg N ha^?1 from the system in the absence of rhizobia, to a net maximum input of 199 kg N ha^?1 from legume shoot and root residues, after accounting for removal of N in grain harvest.

Conclusions

The impact of inoculation and soil rhizobia strongly influenced grain yield, grain N concentration and the potential contributions of legume cropping to soil N fertility. In soil with resident rhizobia, N₂ fixation was improved only with the highest inoculation rate.     

Leaf growth,senescence and decomposition of Juncus maritimus Lam. in a coastal Mediterranean marsh

In this study, the growth, senescence, leaf loss and nutrient dynamics of Juncus maritimus were followed to examine litter decay in a Mediterranean coastal marsh. Decomposition was studied in dead leaves still attached to the plant and in leaves placed in litterbags (detached leaves/litter) on the sediment surface. The dynamics of fungi, meiofauna and epiphytes associated with detached litter were also followed. No significant differences were observed between decay rates in dead leaves attached to plants (0.0017 day⁻¹) and detached leaves (0.0015 day⁻¹) in litter bags. The percentage of ash-free dry weight lost was inversely proportional to the C:N and C:P ratios in plant detritus during decay, indicating N and P limitation for the decomposer community inhabiting decaying J. maritimus litter and uptake of these nutrients from the environment. Water availability and high temperatures on the sediment surface increased the density of meiofauna and epiphyton and decreased fungal biomass during the first 20 days of the experiment. The density of ciliates and nematodes in decomposing litter was inversely related to the C:N ratio and directly related to the percentage of AFDW lost. On the basis of these observations, it was concluded that meiofauna are primary colonizers of J. maritimus leaf litter.     

The role of gross and net N transformation processes and NH4 + and NO3 − immobilization in controlling the mineral N pool of a temperate mixed deciduous forest soil

In many forests of Europe and north-eastern North America elevated N deposition has opened the forest N cycle, resulting in NO₃ ^? leaching. On the other hand, despite this elevated N deposition, the dominant fate of NO₃ ^? and NH₄ ⁺ in some of these forests is biotic or abiotic immobilization in the soil organic matter pool, preventing N losses. The environmental properties controlling mineral N immobilization and the variation and extent of mineral N immobilization in forest soils are not yet fully understood. In this study we investigated a temperate mixed deciduous forest, which is subjected to an average N deposition of 36.5 kg N ha^?1 yr^?1, but at the same time shows low NO₃ ^? concentrations in the groundwater. The aim of this study was to investigate whether the turnover rate of the mineral N pool could explain these low N leaching losses. A laboratory ¹⁵N pool dilution experiment was conducted to study gross and net N mineralization and nitrification and mineral N immobilization in the organic and uppermost (0–10 cm) mineral layer of the forest soil. Two locations, one at the forest edge (GE) and another one 145 m inside the forest (GF1), were selected. In the organic layers of GE and GF1, the gross N mineralization averaged 10.9 and 11.1 mg N kg^?1 d^?1, the net N mineralization averaged 6.1 and 6.8 mg N kg^?1 d^?1 and NH₄ ⁺ immobilization rates averaged 3.8 and 3.6 mg N kg^?1 d^?1. In the organic layer of GE and GF1, the average gross nitrification was 3.8 and 4.6 mg N kg^?1 d^?1, the average net nitrification was ?25.2 and ?31.3 mg N kg^?1 d^?1 and the NO₃ ^? immobilization rates averaged 29.0 and 35.9 mg N kg^?1 d^?1. For the mineral (0–10 cm) layer the same trend could be observed, but the N transformation rates were much lower for the NH₄ ⁺ pool and not significantly different from zero for the NO₃ ^? pool. Except for the turnover of the NH₄ ⁺ pool in the mineral layer, no significant differences were observed between location GE and GF1. The ratio of NH₄ ⁺ immobilization to gross N mineralization, gross N mineralization to gross nitrification, and NO₃ ^? immobilisation to gross nitrification led to the following observations. The NH₄ ⁺ pool of the forest soil was controlled by N mineralization and NO₃ ^? immobilization was importantly controlling the forest NO₃ ^? pool. Therefore it was concluded that this process is most probably responsible for the limited NO₃ ^? leaching from the forest ecosystem, despite the chronically high N deposition rates.     

Water relations, gas exchange characteristics, and the level of some metabolites in two cultivars of spring wheat under different N regimes

Twenty eight-day old plants of two spring wheat cultivars differing in salinity tolerance were subjected to varying levels of nitrogen (56, 112, and 224 mg N·kg⁻¹ soil) for 42 days. Both cultivars performed differently under varying soil N levels in terms of growth, and grain yield and yield components. Nitrogen levels, 112 and 224 mg·kg⁻¹ soil, caused maximal growth in Sarsabz and Barani-83, respectively. Cv Sarsabz maintained higher leaf water and turgor potentials, but lower leaf osmotic potential than those of Barani-83 at all external N regimes. Sarsabz had higher Chl a, Chl b and carotenoids contents in leaves than those in Barani-83 at 56 and 112 mg N·kg⁻¹ soil. Sarsabz had higher contents of leaf soluble proteins, soluble sugars, and free amino acids than those in Barani-83 at all external N levels. In Barani-83 net CO₂ assimilation rate remained almost unchanged, whereas in Sarsabz it decreased consistently with increase in external N level. The better growth performance of Sarsabaz as compared to Barani-83 under varying soil N levels except 224 mg N·kg⁻¹ soil was associated with maintenance of high leaf turgor potential but not with net CO₂ assimilation rate.     

Dissolved organic carbon production and flux under long-term litter manipulations in a Pacific Northwest old-growth forest

Dissolved organic carbon (DOC) flux is an important mechanism to convey soil carbon (C) from aboveground organic debris (litter) to deeper soil horizons and can influence the formation of stable soil organic C compounds. The magnitude of this flux depends on both infiltration and DOC production rates which are functions of the climatic, soil, topographic and ecological characteristics of a region. Aboveground litter quantity and quality was manipulated for 20 years in an old-growth Douglas fir forest under six treatments to study relationships among litter inputs, DOC production and flux, and soil C dynamics. DOC concentrations were measured at two depths using tension lysimeters, and a hydrologic model was created to quantify water and DOC flux through the soil profile. DOC concentrations ranged from 3.0–8.0 and 1.5–2.5 mg C/L among treatments at 30 and 100 cm below the soil surface, respectively. Aboveground detrital inputs did not have a consistent positive effect on soil solution DOC; the addition of coarse woody debris increased soil solution DOC by 58% 30 cm belowground, while doubling the mass of aboveground leaf litter decreased DOC concentrations by 30%. We suggest that high-quality leaf litter accelerated microbial processing, resulting in a “priming” effect that led to the lower concentrations. Annual DOC flux into groundwater was small (2.7–3.7 g C/m²/year) and accounts for < 0.1% of estimated litter C at the site. Therefore, direct DOC loss from surface litter to groundwater is relatively negligible to the soil C budget. However, DOC flux into the soil surface was much greater (73–210 g C/m²/year), equivalent to 1.4–2.4% of aboveground litter C. Therefore, DOC transport is an important source of C to shallow soil horizons.

     

Positive feedbacks between decomposition and soil nitrogen availability along fertility gradients

Background and aims

We determined the relationship between site N supply and decomposition rates with respect to controls exerted by environment, litter chemistry, and fungal colonization.

Methods

Two reciprocal transplant decomposition experiments were established, one in each of two long-term experiments in oak woodlands in Minnesota, USA: a fire frequency/vegetation gradient, along which soil N availability varies markedly, and a long-term N fertilization experiment. Both experiments used native Quercus ellipsoidalis E.J. Hill and Andropogon gerardii Vitman leaf litter and either root litter or wooden dowels.

Results

Leaf litter decay rates generally increased with soil N availability in both experiments while belowground litter decayed more slowly with increasing soil N. Litter chemistry differed among litter types, and these differences had significant effects on belowground (but not aboveground) decay rates and on aboveground litter N dynamics during decomposition. Fungal colonization of detritus was positively correlated with soil fertility and decay rates.

Conclusions

Higher soil fertility associated with low fire frequency was associated with greater leaf litter production, higher rates of fungal colonization of detritus, more rapid leaf litter decomposition rates, and greater N release in the root litter, all of which likely enhance soil fertility. During decomposition, both greater mass loss and litter N release provide mechanisms through which the plant and decomposer communities provide positive feedbacks to soil fertility as ultimately driven by decreasing fire frequency in N-limited soils and vice versa.     

Potential effects of leaf litter on water quality in urban watersheds

Leaf litter plays a critical role in regulating ecological functions in headwater forest streams, whereas the effects of leaves on water quality in urbanized streams are not fully understood. This study examined the potential importance of leaf litter for the release and transformations of organic carbon and nutrients in urban streams, and compared the effects with other types of natural organic substrates (periphyton and stream sediment). Nutrients and organic carbon were leached from senescent leaves of 6 tree species in the laboratory with deionized water, and maximal releases, leaching rate constants, composition and bioavailability of the leached dissolved organic carbon (DOC) were determined. Stream substrates (leaf debris, rocks with periphyton, and sediment) were seasonally collected from urban and forest reference streams of the NSF Baltimore Long-term Ecological Research Site and incubated with overlying stream water to estimate areal fluxes of DOC and nitrogen. Leaf litter leaching showed large ranges in maximal releases of DOC (7.0–131 mg g^?1), dissolved organic nitrogen (DON; 0.07–1.39 mg g^?1) and total dissolved phosphorus (TDP; 0.14–0.70 mg g^?1) among tree species. DOC leaching rate constants, carbon to nitrogen ratios, and DOC bioavailability were all correlated with organic matter quality indicated by fluorescence spectroscopy. Results from substrate incubation experiments showed far higher DOC and DON release and nitrate retention with leaf debris than with sediment, or rocks with periphyton. DOC release from leaf debris was positively correlated with stream nitrate retention at residential and urban sites, with the highest values observed during the fall and lowest during the summer. This study suggests the potential importance of leaf litter quantity and quality on fostering DOC and nutrient release and transformations in urban streams. It also suggests that species-specific impacts of leaves should be considered in riparian buffer and stream restoration strategies.     

Changes to the N cycle following bark beetle outbreaks in two contrasting conifer forest types

Outbreaks of Dendroctonus beetles are causing extensive mortality in conifer forests throughout North America. However, nitrogen (N) cycling impacts among forest types are not well known. We quantified beetle-induced changes in forest structure, soil temperature, and N cycling in Douglas-fir (Pseudotsuga menziesii) forests of Greater Yellowstone (WY, USA), and compared them to published lodgepole pine (Pinus contorta var. latifolia) data. Five undisturbed stands were compared to five beetle-killed stands (4–5 years post-outbreak). We hypothesized greater N cycling responses in Douglas-fir due to higher overall N stocks. Undisturbed Douglas-fir stands had greater litter N pools, soil N, and net N mineralization than lodgepole pine. Several responses to disturbance were similar between forest types, including a pulse of N-enriched litter, doubling of soil N availability, 30–50 % increase in understory cover, and 20 % increase in foliar N concentration of unattacked trees. However, the response of some ecosystem properties notably varied by host forest type. Soil temperature was unaffected in Douglas-fir, but lowered in lodgepole pine. Fresh foliar %N was uncorrelated with net N mineralization in Douglas-fir, but positively correlated in lodgepole pine. Though soil ammonium and nitrate, net N mineralization, and net nitrification all doubled, they remained low in both forest types (<6 μg N g soil^?1 NH₄ ⁺or NO₃ ^?; <25 μg N g soil^?1 year^?1 net N mineralization; <8 μg N g soil^?1 year^?1 net nitrification). Results suggest that beetle disturbance affected litter and soil N cycling similarly in each forest type, despite substantial differences in pre-disturbance biogeochemistry. In contrast, soil temperature and soil N–foliar N linkages differed between host forest types. This result suggests that disturbance type may be a better predictor of litter and soil N responses than forest type due to similar disturbance mechanisms and disturbance legacies across both host–beetle systems.     

Contamination effects on soil density fractions from high N or C content sodium polytungstate

Sodium polytungstate (SPT) is currently the material of choice for soil density fractionation (DF). We recently detected high levels of N in several types of commercially available SPT (0.74–1.4 mg g^?1), raising a concern that undesirable chemical effects on soils may occur during the DF procedure. To address this concern, we conducted two experiments to examine effects of SPT on C and N in the resulting soil fractions. First we suspended A-horizon material from three soil types of greatly differing mineralogy for 24 h in solutions containing three types of commercially obtained SPT and commercial SPT that had been passed through cation exchange resin columns. We compared %C, %N, ¹⁵N and ¹³C values in treated and untreated soils. We also spiked SPT with tracer-level ¹⁵NH₄ ⁺ to measure potential NH₄ ⁺ absorption by the soil fractions. Results suggest that the N-rich commercially available SPT can have a considerable effect on δ¹⁵N values, likely due to the presence of ¹⁵N-enriched NH₄ ⁺ in the SPT. In one of our soils, ¹⁵N enrichment of 3‰ was observed associated with overnight soaking in N-rich SPT (0.74 mg g^?1). By contrast, when using SPT with low levels of N (0.05 mg g^?1), no significant changes in ¹⁵N were observed. The remaining soil (after suspension and rinsing) was similar in %C, %N, ¹⁵N and ¹³C to the untreated bulk soil, suggesting that suspension of soil in SPT with low N levels purchased from the manufacturer or else through treatment with cation exchange resins does not greatly alter these variables. Low-N SPT is available commercially although it must be specifically requested from the manufacturer and is currently more expensive to purchase. Our results confirm that SPT tested and known to be low in C and N (<0.06 mg g^?1) does not adversely contaminate soils during the soil density fractionation procedure. If using newly purchased or recycled SPT with higher N or C levels than this, we recommend thorough testing for possible contamination effects prior to use. However we caution against using SPT that contains N or C levels >0.5 mg g^?1.     

Concomitant production of xylanases and cellulases from <Emphasis Type="Italic">Trichoderma longibrachiatum</Emphasis> MDU-6 selected for the deinking of paper waste

Sixty fungal cultures were isolated from agricultural soil, industrial soil, forest canopy soil having decomposed leaf litter and compost samples collected from different regions of India. Fifteen fungal cultures were selected qualitatively for the production of xylanase and cellulases and were identified employing ITS, NS and MNS primers. The enzyme cocktail consisting of 3811 IU g^?1 of xylanase and 9.9 IU g^?1 of cellulase from Trichoderma longibrachiatum MDU-6 was selected quantitatively for the deinking of diverse paper wastes. The enzyme production increased two fold when produced at tray level in comparison with flasks. The enzyme cocktail was effective in the deinking of old newspaper samples with significant removal of chromophores, phenolics and hydrophobic compounds and less sugar loss. While in case of examination papers and laser printed papers, ink removal was not very significant. Moreover, the sugar loss was significantly high in case of examination papers. The deinking results were further confirmed with FTIR analysis. Deinked newspaper pulp sample shows brightness of 52 %, which was 9.6 % high than its control sample. The ERIC value for deinked newspaper pulp was found to be 655.9 ppm. Thereafter, the deinked newspaper pulp was examined under light microscope after differential staining with safranin and malachite green and also examined under scanning and transmission electron microscope, which revealed fibrillation and perforation.     

Fungal contributions to carbon flow and nutrient cycling during decomposition of standing Typha domingensis leaves in a subtropical freshwater marsh

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Productivities of microbial decomposers during early stages of decomposition of leaves of a freshwater sedge

1. We examined standing-senescing, standing-dead and recently fallen leaf blades of Carex walteriana in fens of the Okefenokee Swamp to determine the nature of the microbial decomposers in the early stages of decomposition, measuring both standing crops and productivities ([³H]leucineprotein method for bacteria, [¹⁴C]acetateergosterol for fungi). 2. Fungal standing crops (ergosterol) became detectable at the mid-senescence stage (leaves about half yellow-brown) and rose to 14–31 mg living-fungal C g^?1 organic mass of the decaying system; bacterial standing crops (direct microscopy) were ± 0.2 mgC g^?1 until the fallen-leaf stage, when they rose to as high as 0.9 mgC g^?1. 3. Potential microbial specific growth rates were similar between fungi and bacteria, at about 0.03–0.06 day^?1, but potential production of fungal mass was 115–512 μgC g^?1 organic mass day^?1, compared with 0–22 μgC g^?1 day^?1 for bacteria. Rates of fungal production were about 6-fold lower on average than previously found for a saltmarsh grass, perhaps because much lower phosphorus concentratiofis in the freshwater fen limit fungal activity. 4. There was little change in lignocellulose (LC) percentage of decaying leaves, although net loss of organic mass at the fallen, broken stage was estimated to be 59%, suggesting that LC was lost at rates proportional to those for total organics during decay. Monomers of fungal-wall polymers (glucosamine and mannose) accumulated 2- to 4-fold during leaf decay. This may indicate that an increase found for proximate (acid-detergent) lignin could be at least partially due to accumulation of refractory fungal-wall material, including melanin. 5. A common sequence in decaying aquatic grasses is suggested: principally fungal alteration of LC during standing decay, followed by a trend toward bacterial decomposition of the LC after leaves fall and break into particles.     

Decomposition pathways of 13C-depleted leaf litter in forest soils of the Swiss Jura

Decomposition of leaf litter and its incorporation into the mineral soil are key components of the C cycle in forest soils. In a ¹³C tracer experiment, we quantified the pathways of C from decomposing leaf litter in calcareous soils of a mixed beech forest in the Swiss Jura. Moreover, we assessed how important the cold season is for the decomposition of freshly fallen leaves. The annual C loss from the litter layer of 69–77% resulted mainly from the C mineralization (29–34% of the initial litter C) and from the transfer of litter material to the deeper mineral soil (>4 cm) by soil fauna (30%). Although only 4–5% of the initial litter C was leached as dissolved organic carbon (DOC), this pathway could be important for the C sequestration in soils in the long term: The DOC leached from the litter layer was mostly retained (95%) in the first 5 cm of the mineral soil by both physico-chemical sorption and biodegradation and, thus, it might have contributed significantly to the litter-derived C recovered in the heavy fraction (>1.6 g cm^?3) at 0–4 cm depth (4% of the initial litter C). About 80% of the annual DOC leaching from the litter layer occurred during the cold season (Nov–April) due to an initial DOC flush of water-soluble substances. In contrast, the litter mineralization in winter accounted for only 25% of the annual C losses through CO₂ release from the labelled litter. Nevertheless, the highest contributions (45–60%) of litter decay to the heterotrophic soil respiration were observed on warm winter days when the mineral soil was still cold and the labile litter pool only partly mineralized. Our ¹³C tracing also revealed that: (1) the fresh litter C only marginally primed the mineralization of older SOM (>1 year); and (2) non-litter C, such as throughfall DOC, contributed significantly to the C fluxes from the litter layer since the microbial biomass and the DOC leached from the litter layer contained 20–30% and up to 60% of unlabelled C, respectively. In summary, our study shows that significant amounts of recent leaf litter C (<1 year) are incorporated into mineral soils and that the cold season is clearly less important for the litter turnover than the warm season in this beech forest ecosystem.     

Soil N and C trace gas fluxes and microbial soil N turnover in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary

During two intensive field campaigns in summer and autumn 2004 nitrogen (N₂O, NO/NO₂) and carbon (CO₂, CH₄) trace gas exchange between soil and the atmosphere was measured in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary. The climate can be described as continental temperate. Fluxes were measured with a fully automatic measuring system allowing for high temporal resolution. Mean N₂O emission rates were 1.5 μg N m⁻² h⁻¹ in summer and 3.4 μg N m⁻² h⁻¹ in autumn, respectively. Also mean NO emission rates were higher in autumn (8.4 μg N m⁻² h⁻¹) as compared to summer (6.0 μg N m⁻² h⁻¹). However, as NO₂ deposition rates continuously exceeded NO emission rates (−9.7 μg N m⁻² h⁻¹ in summer and −18.3 μg N m⁻² h⁻¹ in autumn), the forest soil always acted as a net NO _x sink. The mean value of CO₂ fluxes showed only little seasonal differences between summer (81.1 mg C m⁻² h⁻¹) and autumn (74.2 mg C m⁻² h⁻¹) measurements, likewise CH₄uptake (summer: −52.6 μg C m⁻² h⁻¹; autumn: −56.5 μg C m⁻² h⁻¹). In addition, the microbial soil processes net/gross N mineralization, net/gross nitrification and heterotrophic soil respiration as well as inorganic soil nitrogen concentrations and N₂O/CH₄ soil air concentrations in different soil depths were determined. The respiratory quotient (ΔCO_{2 resp} ΔO_{2 resp}⁻¹) for the uppermost mineral soil, which is needed for the calculation of gross nitrification via the Barometric Process Separation (BaPS) technique, was 0.8978 ± 0.008. The mean value of gross nitrification rates showed only little seasonal differences between summer (0.99 μg N kg⁻¹ SDW d⁻¹) and autumn measurements (0.89 μg N kg⁻¹ SDW d⁻¹). Gross rates of N mineralization were highest in the organic layer (20.1–137.9 μg N kg⁻¹ SDW d⁻¹) and significantly lower in the uppermost mineral layer (1.3–2.9 μg N kg⁻¹ SDW d⁻¹). Only for the organic layer seasonality in gross N mineralization rates could be demonstrated, with highest mean values in autumn, most likely caused by fresh litter decomposition. Gross mineralization rates of the organic layer were positively correlated with N₂O emissions and negatively correlated with CH₄ uptake, whereas soil CO₂ emissions were positively correlated with heterotrophic respiration in the uppermost mineral soil layer. The most important abiotic factor influencing C and N trace gas fluxes was soil moisture, while the influence of soil temperature on trace gas exchange rates was high only in autumn.