Diffusion with attrition

This article treats the problem of the sharp front observed when a diffusing substance interacts irreversibly with binding sites within the medium. The model consists of two simultaneous partial differential equations that are nonlinear and cannot be solved in closed form. The parameters are the diffusion coefficient D in the direction under consideration (x), the interaction constant k, the binding-site concentration μ and the boundary concentration of the diffusing ion c ₀. Our aim is to develop methods to enable the estimation of these parameters from the experimental data. An analytical solution for the case k → ∞, as found by others, is given first and then a finite element analysis package is used to obtain numerical solutions for the general case. Graphs are presented to illustrate the effects of the various parameters. Simple graphical procedures are described to compute μ and c ₀. The position of the advancing front ξ then provides, together with μ, a way to estimate D. A mathematical identity relating D and x and a second one involving D, k and t help to reduce the complexity of the problem. A new, measurable quantity S(t) is defined as where f is the total concentration (free + bound) of the diffusing ion at time t, and detailed plots are furnished that permit the computation of k directly from S(t), μ and D. The accuracy with which such methods can be expected to determine the various parameters of the model is considered at some length. Finally, in a concluding section, we simulate typical experimental data, examine the validity of our methods, and see how their accuracy is affected by controlled amounts of various kinds of noise.     

Diffusion of KCl in an amylose film

A method has been developed measuring the diffusion coefficient of KCl in amylose films. The films were soaked in potassium chloride solutions, then immersed in pure water and conductivity measured as a function of time. Different concentrations of the soaking solution were used and the measurements were made at several temperatures. The diffusion coefficient of KCl was found to be independent of the soaking solution KCl concentration, but found to increase with increasing temperature. The diffusion coefficient values were about one quarter of those found in water and varied from 4.8×10⁻¹⁰ to 11×10⁻¹⁰ m² s⁻¹. The activation energy of diffusion was close to that found in water. Two values for the activation energy were obtained, 20.1 and 14 kJ mol⁻¹, indicating a change in the film structure at 45 °C. Amylose films swelled equally in KCl-solutions and water. The thickness of amylose films doubled and the increase in mass was 100–200% corresponding the decrease of amylose content from about 87 to 37%, when the conditions changed from normal humidity conditions to water.     

Modelling Diffusion in Zeolites by Molecular Dynamics Simulations

Abstract

The diffusion of molecules sorbed in zeolites is of growing interest for understanding the mechanisms of chemical processes with regard to selectivity and reactivity [1].

MD simulations give insight into physical systems on the molecular level allowing to study and visualize the motion of molecules even beyond the possibilities of experiments [2,3]. Single system parameters can easily be varied to study their influence, also those parameters that are fixed in reality (e.g., the size of particles). We present a cross section of our recent work to illustrate the capabilities of MD: The self diffusion coefficients (D) of a mixture of methane and xenon in silicalite show remarkable deviations from those of the pure species. This is shown and confirmed by PFG NMR experiments [4].

Simulating ethane in zeolite A the mechanism of diffusion has been studied. The effects of rotation on the diffusion lead to cases where D decreases with growing temperature [5].

The independence of self diffusion on lattice vibrations is proven even for zeolites with windows of guest particle size comparing simulations with rigid and vibrating zeolite lattice [6].     

湖北省实验动物设施环境控制中存在的问题

目的分析总结湖北省2012年度实验动物许可单位年检中环境设施的检测结果,找出问题,提出促进湖北省实验动物环境设施可靠运行的建议。方法各实验动物环境设施采用30%区域抽检方式,依据GB14925-2010《实验动物环境及设施》,进行环境指标检测。结果除气流速度、沉降菌最大平均浓度外,其他技术指标均存在不符合国家标准的情况。结论应针对实验动物设施管理加强培训,提高实验动物设施管理人员的管理水平,从而保证实验动物设施的正常运行。     

Diffusion barriers for ADP in the cardiac cell

The regulation of mitochondrial respiration in the intact heart may differ from that of isolated mitochondria if intracellular diffusion is restricted. Here we consider which factors may hinder diffusion in vivo and, based on computational analysis, design a reverse engineering approach to estimate the role of diffusional resistance in mitochondrial regulation from an experiment on the intact heart. Computational analysis of respiration measurements on skinned heart fibers shows that the outer mitochondrial membrane does not hinder diffusion enough to cause ADP gradients of tens of micromolars. A diffusion model further shows that the mesoscale structure of the myofibrillar space also does not hinder diffusion appreciably. However, ADP gradients are suggested by the measured activation time of oxidative phosphorylation and may be caused by diffusion restriction of other intracellular structures or the in vivo microstructure of networks of physically interacting proteins. Based on computational modeling we propose an experiment on the intact heart that allows to estimate the effective diffusion restriction between ATP producing and consuming sites in the cardiac cell.     

Diffusion of TCE Through Soil-Bentonite Slurry Walls

Diffusion experiments performed using both a dissolved solution of trichloroethylene (TCE) and a pool of free phase TCE adjacent to a simulated soil-bentonite (SB) wall are described. These tests examine a multi-layer system that includes both contaminated sand and a SB barrier. Results obtained from experiments with dissolved TCE as the primary source are shown to be consistent with those obtained with free-phase TCE as the source of contaminant. Diffusion and sorption coefficients of a soil-bentonite slurry wall are reported to be 3.5 × 10^?10 m ² /s and 0 cm ³ /g, respectively. These diffusion and sorption coefficients were used to evaluate the effectiveness of a hypothetical SB slurry wall located adjacent to a TCE spill.     

The influence of urine from asymptotic laboratory populations on sexual maturation in prairie deermice

Male and female prairie deermice housed singly from weaning (21 days) until 40 days of age had urine from one of the following sources applied daily to their nostrils: sexually mature laboratory population males or females, and sexually mature breeder males or females from our laboratory colony. Other males and females were treated with water. Records were obtained of the weights of the tests, seminal vesicles and bacula of males and the ovaries and uteri of females at 40 days of age. The major results of this study were as follow: Female urine from sexually mature and inhibited population or isolated mice stimulated the development of the male reproductive organs significantly more than water or male urine. Male urine applied to young males did not differentially affect the weights of their reproductive organs compared with water and thus showed no inhibition effects. The reproductive organs of females treated with male urine did not differ significantly in weight from those of females treated with female urine. Females treated with water developed significantly larger uteri than those treated with urine from sexually mature population females (P≤0.02), inhibited population females (P<0.001) and inhibited population males (P<0.007).     

Molecular Dynamics Studies of Diffusion in Model Cylindrical Pores at Very Low Densities

Abstract

Molecular dynamics simulation has been used to study diffusion of methane at ambient temperature in cylindrical pores at very low densities. The cylinders were modelled as a continuum solid which interacts with the methane in the radial direction only. At the lowest densities, the VACF method does not yield reliable values of the self diffusion coefficient, D_s , but a suitable choice of time step and run length enables values of D_s to be found from MSD plots that are below the classical Knudsen diffusion coefficients. When density is increased, D_s passes through a maximum although the adsorption isotherm remains inside the Henry law region. Maxima are found for two cylinder radii and for two adsorbent field strengths. The existence of a maximum is attributed to transient intermolecular interactions. Analysis of a molecular trajectory demonstrates that long diffusion paths can be triggered by the rare event of an intermolecular encounter which forces a molecule into the repulsive part of the wall potential. At sufficiently high density, subsequent collisions quench the tendency towards long paths, and D_s decreases again. The issue of simulation artefact as a source of these observations is discussed.     

医学检验专业医学寄生虫学与检验课程教学改革初探

目的改革医学寄生虫学与检验理论与实践教学方法,提高教学质量。方法框架式讲授理论与实验内容后,引入案例,通过启发式教学方法引发学生兴趣;以问题为导向,进行探究式学习,以专业需求为目标,设专题实验室,以实践性和综合性实验为主导,改革课程知识安排顺序和考核评价方法。结果学生学习主动性提高,专业重点清晰。结论教学改革取得满意的效果。     

加强医学研究生实验操作中的生物安全防护

标准化管理是医学实验室发展的趋势,生物安全建设已成为医学实验室发展不可缺少的环节。实验室生物安全更是保证实验研究的科学性以及保护被实验因子免受污染的必要条件。医学研究生在实验研究过程中不可避免地会接触到生物危险因子,因此对医学研究生进行实验室生物安全知识及技能培训是实验室生物安全建设的重要组成部分。本文就医学研究生实验室生物安全知识及技能培训进行初步的研究和探讨。     

Diffusion of molecules and macromolecules in thylakoid membranes

The survival and fitness of photosynthetic organisms is critically dependent on the flexible response of the photosynthetic machinery, harbored in thylakoid membranes, to environmental changes. A central element of this flexibility is the lateral diffusion of membrane components along the membrane plane. As demonstrated, almost all functions of photosynthetic energy conversion are dependent on lateral diffusion. The mobility of both small molecules (plastoquinone, xanthophylls) as well as large protein supercomplexes is very sensitive to changes in structural boundary conditions. Knowledge about the design principles that govern the mobility of photosynthetic membrane components is essential to understand the dynamic response of the photosynthetic machinery. This review summarizes our knowledge about the factors that control diffusion in thylakoid membranes and bridges structural membrane alterations to changes in mobility and function. This article is part of a Special Issue entitled: Dynamic and ultrastructure of bioenergetic membranes and their components.     

Diffusion of hydrophilic probes in bicontinuous lipidic cubic phase

The lipidic cubic phase was prepared by mixing monoolein (monooleoyl-rac-glycerol, MO) with water in 64:36% ratio and applied to the solid support-glassy carbon or platinum electrodes. Highly viscous, homogeneous and transparent cubic phase film remained stable and firmly attached to the electrode surface. In order to describe the efficiency of transport of small hydrophilic molecules within the film, we studied the diffusion of selected redox mediators along the network of aqueous channels present in the cubic phase structure. Loading times, diffusion coefficients and concentrations of the mediators in the layer were determined by voltammetry and chronocoulometry using two types of electrodes: a normal size electrode working in the linear diffusion regime and an ultramicroelectrode working under spherical diffusion conditions. In addition to the well-defined order, transparency and viscosity, the fast transport of small redox mediators through the aqueous channels of the cubic phase and along the interfacial water-lipid region is another important property of this matrix. The diffusion of the hydrophilic probes in the cubic phase was found to be more efficient than in the Nafion layers. Efficient transport of small redox mediators within the cubic phase means that not only enzymes and synthetic catalysts can be incorporated into the phase but also their fast communication with electrode surface will be enabled thanks to the simultaneous incorporation of small mobile redox mediators. This property of the cubic liquid crystalline phases based on lipids makes them especially interesting from the point of view of practical applications in biosensing and bioelectrocatalysis.     

两捕食-食饵自治扩散系统的持续生存

本文得到了自治Lotka-Voltrerra两捕食-食饵扩散系统持续生存及捕者灭绝的条件.     

两毒素环境中具有分离扩散的种群动力系统的持久性

本文是文「５」在ｎ＝２时更进一步的讨论,模型由一个种群构成,此种群可在两个毒素环境中生存,且种群扩散仅与其所在自下而上环境中的（数量）密度决定,得到了比文「５」更精细的结论。     

Diffusion of nitric oxide and scavenging by blood in the vasculature

It has been deduced (Lancaster, Proc. Natl. Acad. Sci. USA 91 (1994) 8137–8141), from a consideration of Fick’s law of diffusion, that the very effective scavenging of nitric oxide (NO) by haemoglobin in red blood cells prevents any NO from endothelial cells migrating outwards into vascular smooth muscle. This conclusion has led some authors to suggest that endothelium-derived relaxing factor (EDRF) is not free NO. We have reconsidered the application of Fick’s law to the migration of NO in the vasculature, making allowance for the reaction of NO with guanylate cyclase and for the layer of red blood-free plasma next to the endothelium. The source of NO is taken as an infinite cylinder. Calculations for vessels of various diameters indicate that a substantial amount of NO migrates outwards in spite of very effective scavenging by haemoglobin and that the relative amount of NO migrating outwards depends upon the radius of the vessel. The view that locally produced NO is not responsible for vascular dilation has not been sustained.     

不同层次需求的实验动物学教学特点

实验动物学教学已成为医学教育中不可或缺的组成部分。本文从课程设置背景、课程安排、考核方法等方面总结了不同层次的实验动物学教学特点,以供广大实验动物教学工作者参考。     

含扩散和时滞的偏微分方程解的振动性

研究一类含扩散和时滞的偏微分方程解的振动性,利用平均法,通过使用偏泛函微分方程上、下解思想和泛函微分方程振动性理论,获得了其解的非负性和关于正平衡态振动的充分条件．     

Small Molecule Diffusion into Swelling Iota-Carrageenan Gels: A Fluorescence Study

Abstract

Small molecule diffusion into Iota-Carrageenan gel was studied by using steady-state fluorescence (SSF) technique. Pyranine, dissolved in water was used as fluorescence probe. Fluorescence emission intensity, I_p, and scattered light intensity, I_sc, were monitored to study diffusion and swelling processes at various temperatures respectively. Fickian and Li-Tanaka models were elaborated to produce diffusion, D, and collective diffusion, D ₀, coefficients. Diffusion and swelling activation energies were also obtained and found to be 20.5 kj mol^?1 and 28.2 kj mol^?1, respectively.