Integrating information literacy training into an inquiry-based introductory biology laboratory

ABSTRACT

Information literacy is an essential skill for biologists; however, most biology curricula do not intentionally integrate information literacy into classroom and laboratory exercises. There is evidence that developing information literacy skills in undergraduates improves their research skills, writing, and GPAs. Our objective was to integrate information literacy skills into a first semester introductory biology laboratory with a multi-week, inquiry-based module that leverages primary literature. Here we describe the module, which challenges students to develop and test a hypothesis related to parental care behaviour in birds. Students form hypotheses based on literature searching done during librarian-led information literacy sessions, produce an annotated bibliography, collect and analyse video data of barn swallows feeding their offspring, and present their findings. Analysis of students’ annotated bibliographies indicates that 83% of the referenced papers were appropriate for developing their specific hypotheses. The key elements ofa successful information literacy training plan include faculty-librarian collaboration, multiple classroom or laboratory sessions that introduce or utilize information literacy, and relevance ofthe information literacy training to an assignment. By introducing information literacy early inbiology curricula, departments can develop tiered information literacy plans that incorporate opportunities for students to use and refine these skills throughout their studies.     

Information literacy in biology education: an example from an advanced cell biology course

Information literacy skills are critically important for the undergraduate biology student. The ability to find, understand, evaluate, and use information, whether from the scientific literature or from Web resources, is essential for a good understanding of a topic and for the conduct of research. A project in which students receive information literacy instruction and then proceed to select, update, and write about a current research topic in an upper-level cell biology course is described. Students research the chosen topic using paper and electronic resources, generate a list of relevant articles, prepare abstracts based on papers read, and, finally, prepare a "state-of-the-art" paper on the topic. This approach, which extends over most of one semester, has resulted in a number of well-researched and well-written papers that incorporate some of the latest research in cell biology. The steps in this project have also led to students who are prepared to address future projects on new and complex topics. The project is part of an undergraduate course in cell biology, but parts of the assignments can be modified to fit a variety of subject areas and levels.     

Transposing from the Laboratory to the Classroom to Generate Authentic Research Experiences for Undergraduates

Large lecture classes and standardized laboratory exercises are characteristic of introductory biology courses. Previous research has found that these courses do not adequately convey the process of scientific research and the excitement of discovery. Here we propose a model that provides beginning biology students with an inquiry-based, active learning laboratory experience. The Dynamic Genome course replicates a modern research laboratory focused on eukaryotic transposable elements where beginning undergraduates learn key genetics concepts, experimental design, and molecular biological skills. Here we report on two key features of the course, a didactic module and the capstone original research project. The module is a modified version of a published experiment where students experience how virtual transposable elements from rice (Oryza sativa) are assayed for function in transgenic Arabidopsis thaliana. As part of the module, students analyze the phenotypes and genotypes of transgenic plants to determine the requirements for transposition. After mastering the skills and concepts, students participate in an authentic research project where they use computational analysis and PCR to detect transposable element insertion site polymorphism in a panel of diverse maize strains. As a consequence of their engagement in this course, students report large gains in their ability to understand the nature of research and demonstrate that they can apply that knowledge to independent research projects.     

An investigative laboratory course in human physiology using computer technology and collaborative writing

Active investigative student-directed experiences in laboratory science are being encouraged by national science organizations. A growing body of evidence from classroom assessment supports their effectiveness. This study describes four years of implementation and assessment of an investigative laboratory course in human physiology for 65 second-year students in sports medicine and biology at a small private comprehensive college. The course builds on skills and abilities first introduced in an introductory investigations course and introduces additional higher-level skills and more complex human experimental models. In four multiweek experimental modules, involving neuromuscular, reflex, and cardiovascular physiology, by use of computerized hardware/software with a variety of transducers, students carry out self-designed experiments with human subjects and perform data collection and analysis, collaborative writing, and peer editing. In assessments, including standard course evaluations and the Salgains Web-based evaluation, student responses to this approach are enthusiastic, and gains in their skills and abilities are evident in their comments and in improved performance.     

The essence of student visual-spatial literacy and higher order thinking skills in undergraduate biology

Science, engineering and mathematics-related disciplines have relied heavily on a researcher's ability to visualize phenomena under study and being able to link and superimpose various abstract and concrete representations including visual, spatial, and temporal. The spatial representations are especially important in all branches of biology (in developmental biology time becomes an important dimension), where 3D and often 4D representations are crucial for understanding the phenomena. By the time biology students get to undergraduate education, they are supposed to have acquired visual-spatial thinking skills, yet it has been documented that very few undergraduates and a small percentage of graduate students have had a chance to develop these skills to a sufficient degree. The current paper discusses the literature that highlights the essence of visual-spatial thinking and the development of visual-spatial literacy, considers the application of the visual-spatial thinking to biology education, and proposes how modern technology can help to promote visual-spatial literacy and higher order thinking among undergraduate students of biology.     

The essence of student visual–spatial literacy and higher order thinking skills in undergraduate biology

Science, engineering and mathematics-related disciplines have relied heavily on a researcher’s ability to visualize phenomena under study and being able to link and superimpose various abstract and concrete representations including visual, spatial, and temporal. The spatial representations are especially important in all branches of biology (in developmental biology time becomes an important dimension), where 3D and often 4D representations are crucial for understanding the phenomena. By the time biology students get to undergraduate education, they are supposed to have acquired visual–spatial thinking skills, yet it has been documented that very few undergraduates and a small percentage of graduate students have had a chance to develop these skills to a sufficient degree. The current paper discusses the literature that highlights the essence of visual–spatial thinking and the development of visual–spatial literacy, considers the application of the visual–spatial thinking to biology education, and proposes how modern technology can help to promote visual–spatial literacy and higher order thinking among undergraduate students of biology.     

Evolving strategies for the incorporation of bioinformatics within the undergraduate cell biology curriculum

Recent advances in genomics and structural biology have resulted in an unprecedented increase in biological data available from Internet-accessible databases. In order to help students effectively use this vast repository of information, undergraduate biology students at Drake University were introduced to bioinformatics software and databases in three courses, beginning with an introductory course in cell biology. The exercises and projects that were used to help students develop literacy in bioinformatics are described. In a recently offered course in bioinformatics, students developed their own simple sequence analysis tool using the Perl programming language. These experiences are described from the point of view of the instructor as well as the students. A preliminary assessment has been made of the degree to which students had developed a working knowledge of bioinformatics concepts and methods. Finally, some conclusions have been drawn from these courses that may be helpful to instructors wishing to introduce bioinformatics within the undergraduate biology curriculum.     

Biological methods: a novel course in undergraduate biology

We describe a novel course in first year undergraduate practical biology, which introduces students to the principles and practice of a variety of biological techniques. In addition, students develop conceptual skills in experimental design, problem solving, gathering and analysis of data and report writing. The course provides a theoretical foundation and repeated practice of a range of laboratory tasks. Students proceed to higher levels of study with experience in the application and use of basic spectrophotometry and light microscopy, the estimation of unknowns from standard curves, volumetric work including the performance of serial dilutions, and gram stains and the maintenance of bacterial cultures. The unit content can be modified to suit specific curriculums without loss of efficiency or impact.     

Teaching tree thinking in an upper level organismal biology course: testing the effectiveness of a multifaceted curriculum

The ability to interpret and reason from Tree of Life diagrams is a key component of twenty-first century science literacy. This article reports on the authors’ continued development of a multifaceted research-based curriculum – including an instructional booklet, lectures, laboratories and a field activity – to teach such tree thinking to biology students. Results are presented from a study involving biology students enrolled in an upper level organismal biology class. All students received the multi-week tree-thinking curriculum, and learning was assessed by comparing pretest and posttest scores on the novel tree-thinking assessment instrument developed by the authors. Quantitatively, the authors found large gains in tree-thinking abilities due to their instruction. The results also provided qualitative evidence that the authors succeeded in their more general goal of helping students to appreciate the interconnectedness of Earth’s biodiversity through the utility of phylogenetic trees.     

Building student proficiency with scientific literature using the Zotero reference manager platform

While mastery of the scientific literature is a strongly desirable trait for undergraduate students, the sheer volume of the current literature has complicated the challenge of teaching scientific literacy. Part of the response to this ever-increasing volume of resources includes formal instruction in the use of reference manager software while engaging students with the primary literature. This article describes the incorporation of the reference manager program Zotero into a chemical literature course to facilitate the use of digital resources and to better enable them to use proper citation skills in their technical writing.     

The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences

The past decade has seen a rapid increase in the ability of biologists to collect large amounts of data. It is therefore vital that research biologists acquire the necessary skills during their training to visualize, analyze, and interpret such data. To begin to meet this need, we have developed a “boot camp” in quantitative methods for biology graduate students at Harvard Medical School. The goal of this short, intensive course is to enable students to use computational tools to visualize and analyze data, to strengthen their computational thinking skills, and to simulate and thus extend their intuition about the behavior of complex biological systems. The boot camp teaches basic programming using biological examples from statistics, image processing, and data analysis. This integrative approach to teaching programming and quantitative reasoning motivates students’ engagement by demonstrating the relevance of these skills to their work in life science laboratories. Students also have the opportunity to analyze their own data or explore a topic of interest in more detail. The class is taught with a mixture of short lectures, Socratic discussion, and in-class exercises. Students spend approximately 40% of their class time working through both short and long problems. A high instructor-to-student ratio allows students to get assistance or additional challenges when needed, thus enhancing the experience for students at all levels of mastery. Data collected from end-of-course surveys from the last five offerings of the course (between 2012 and 2014) show that students report high learning gains and feel that the course prepares them for solving quantitative and computational problems they will encounter in their research. We outline our course here which, together with the course materials freely available online under a Creative Commons License, should help to facilitate similar efforts by others.This is part of the PLOS Computational Biology Education collection.     

Promoting RRI and active citizenship in an inquiry-based controversial socio-scientific issue: the case of cholesterol regulation with statins

ABSTRACT

Science education is an important dimension of the European Commission’s Responsible Research and Innovation (RRI) objectives; however, RRI is not an explicit focus of biology teaching and few biology teachers have experience in integrating RRI in classroom practice. This study examines the impact of a three 80-minute RRI and active citizenship module on 11th grade biology students, based on the SSIBL pedagogical framework. A representative national sample of 11th grade biology students in Cyprus (n = 398) participated. A pre-post research design examined impact in relation to students’ conceptual understanding regarding cholesterol and its regulation, their understanding of the controversy about cholesterol regulation, awareness of RRI components, feeling of responsibility and willingness to act. Analyses indicated statistically significant gains in conceptual understanding and the understanding of the controversy about cholesterol regulation and awareness of RRI components, as well as in students’ socio-scientific accountability (feeling of responsibility and willingness to act). Conceptual understanding showed increased correlations with Controversy understanding and RRI understanding forming the three of them the cognitive elements of individuals understanding. All of the examined variables are deemed, as of great importance for the design, implementation and evaluation of innovative biology RRI and active citizenship modules.     

Visual immersion for cultural understanding and multimodal literacy

ABSTRACT

When considering inclusive art curriculum that accommodates all learners, including English language learners, two distinct yet inseparable issues come to mind. The first is that English language learner students can use visual language and visual literacy skills inherent in visual arts curriculum to scaffold learning in and through the arts. Second, in facilitating a sense of belonging for students whose home language and cultural aesthetic may be different from those of the dominant school culture, an authentically developed multicultural art curriculum can guide self-efficacy and inclusiveness. Both aspects of teaching art for English language learners can have the added benefits of facilitating collaborative learning opportunities and increasing worldviews for all students.     

Biological and Health Science courses in New Zealand technical institutes

Argumentation in science is the process of coordinating theory and evidence to justify conclusions. This practice is at the heart of scientific journal writing and communication, but little is known regarding the argument quality of college science majors, the future scientists. Studies on written arguments at the college level have focused primarily on non-majors and upper-level students. To investigate and describe these skills throughout the biology curriculum, majors (n = 243) in four levels of undergraduate biology courses at a public university were assessed using a short, written argument instrument based on a hypothetical data set and scenario. Using Toulmin’s argumentation pattern to assess the instruments for argument aspects and quality, very few differences were found in the scores across course levels. Students were able to generate simple arguments consisting of claim, evidence and reasoning. The ability to provide scientific principles as reasoning to connect evidence and claims was positively correlated with course level. However, advanced argumentation skills, such as creating alternative explanations and rebuttals, were lacking across all course levels. These findings imply the need for explicit attention to argument construction throughout the undergraduate biology curriculum.     

A course in communication and information retrieval for undergraduate biologists

Most librarians, and at least some lecturers in institutions of higher education, recognise the need for students to receive instruction in the use of information sources. In the life sciences, the continuing growth in the number of these sources creates problems for biologists. To help students cope with the situation, a compulsory course in Communication and Information Retrieval has been introduced into the BSc degree in biology at Paisley College of Technology. The course, taught by the College library staff, covers the structure of scientific literature, the language barrier, techniques of literature searching and scientific writing, and the information network in the life sciences.     

The Plate Tectonics Project

The Plate Tectonics Project is a multiday, inquiry-based unit that facilitates students as self-motivated learners. Reliable Web sites are offered to assist with lessons, and a summative rubric is used to facilitate the holistic nature of the project. After each topic (parts of the Earth, continental drift, etc.) is covered, the students will generate a portion of the summative assessment that will be set aside and later compiled into a booklet. This summative assessment creates the circumstance in which each student must develop literacy and organizational skills to master the concept that the Earth is a global, dynamic, lithospheric system.     

优化遗传学教学设计的实践与探讨

遗传学教学中采用优化教学设计：加强以学生为中心,促进学生对知识的意义建构;注重信息技术与课程整合,有效利用网络遗传信息资源,培养学生信息素养和自主学习能力;强化研究性实验操作,培养综合能力;重视教与学双边活动,营造融洽互动的教学环境。优化教学设计可充分调动和发挥学生的主体作用,实现知识和能力的转化,为21世纪培养优秀的生物教育工作者。     

Producing scientific posters,using online scientific resources,improves applied scientific skills in undergraduates

ABSTRACT

To succeed, undergraduate science students need to both acquire knowledge, and learn to apply it effectively. Here a novel 1^st year undergraduate module (incorporating blended learning, applied bioinformatic skills and scientific posters) is described and its effectiveness evaluated (quantitatively and qualitatively). The aims were to engage students and teach applied skills through a process-oriented guided-inquiry learning (POGIL) based project, utilising common online tools. Given a nucleotide entry and utilising the National Centre for Biotechnology Information (NCBI) platform students had to identify a specific human syndrome. Students then retrieved and summarised key scientific data, presenting it as a scientific poster. The module effectiveness was demonstrated by the students ability to acquire knowledge (content) and apply it (process), by finding and extracting data from online databases. Assessment included evaluation of the students ability to analyse, visualise and explain acquired data as a scientific poster. Module evaluation used qualitative students surveys and quantitative assessment (pre- and post- module, multiple-choice quiz, assessing content or process specific knowledge). The module led to a significant increase in students applied, process specific, knowledge and enhanced their learning experience. This module demonstrates a successful method for incorporating applied learning into an undergraduate module, developing multiple applied professional skills.     

‘Generation Nemo’: motivations,satisfaction and career goals of marine biology students*

Marine biology is an increasingly preferred study major and career among youth. This is particularly the case of countries with extensive coastlines, such as Italy. In order to understand what exactly is fuelling this trend, and whether it culminates in the successful absorption of marine biologists as valued workforce by society, this study investigated the motivations, satisfaction and career goals of marine biology undergraduate students in Italy. Although it was expected that scientific literacy in formal education plays an important role in motivating marine biology students, the results showed that intrinsic motivations and informal education play a more crucial role. The students consider realistic career options, although these imply having to leave the country. The results of this study were used to make recommendations on the importance of marine and ocean literacy in the formal educational system in Italy, and the general improvement of scientific literacy in formal school education. Recommendations were also made on the potential improvements that can be made by higher education institutions, to better equip marine biologists with the skills required by emerging sectors in society. Finally, considerations were made regarding the dimensioning of supply, offer and marketing of employment opportunities for marine biologists in Italy.