Lactobacilli-Host mutualism: "learning on the fly"

Metazoans establish with microorganisms complex interactions for their mutual benefits. Drosophila, which has already proven useful host model to study several aspects of innate immunity and host-bacteria pathogenic associations has become a powerful model to dissect the mechanisms behind mutualistic host-microbe interactions. Drosophila microbiota is composed of simple and aerotolerant bacterial communities mostly composed of Lactobacillaceae and Acetobactereaceae. Drosophila mono- or poly-associated with lactobacilli strains constitutes a powerful model to dissect the complex interplay between lactobacilli and host biologic traits. Thanks to the genetic tractability of both Drosophila and lactobacilli this association model offers a great opportunity to reveal the underlying molecular mechanisms. Here, we review our current knowledge about how the Drosophila model is helping our understanding of how lactobacilli shapes host biology.     

The distribution and location of the symbiont Lagenophrys aselli on the freshwater isopod Asellus aquaticus

1. The distribution and location of the ciliated protozoan Lagenophrys aselli on the freshwater isopod Asellus aquaticus were studied in relation to water flow over the third pleopod surface. 2. At low densities L. aselli had a significant preference for the anterior centre of the pleopod; however, at the highest densities this preference was no longer significant. The distribution ranged from closer than random at low densities to further than random at the highest densities, and may have been a product of feeding and reproduction of L. aselli as well as the short intermoult period of the host. 3. An individual L. aselli has an effective area of both the lorica and the ciliated feeding disc. The ciliated feeding disc, when extended, may contribute to the presence of a small anterior–posterior gap being left between individuals.     

Distribution of the ticks <Emphasis Type="Italic">Ixodes persulcatus</Emphasis> and <Emphasis Type="Italic">Ixodes pavlovskyi</Emphasis> on the boundary of the forest and forest-steppe zones in the Ob region

Surveys of ixodoid ticks were performed in Novosibirsk Province (Novosibirsk and Toguchin Districts) and in the vicinity of Akademgorodok (Novosibirsk) in 2009–2010. The abundance and distribution of ticks were assessed in 8 types of habitats. Ixodes persulcatus (Schulze, 1930) was collected by flagging in Novosibirsk and Toguchin Districts, with the highest densities of 19 ind./km being observed in habitats with small-leaved trees. Three species of ticks: Ixodes persulcatus, I. pavlovskyi (subspecies I. pavlovskyi occidentalis Filip. et Pan., 1998), and Dermacentor reticulatus (Fabricius, 1794) were recorded in a recreational forest of Akademgorodok. A high abundance (22 ind./km) of I. pavlovskyi was observed in pine forests subjected to considerable recreational load. The abundance of I. persulcatus was the highest in aspen-birch and birch-aspen forests. D. reticulatus was captured in pine forests and fallow lands, its abundance varying from 0.2 to 2 ind./km.     

Evolution of the C<Subscript>4</Subscript> phosphoenolpyruvate carboxylase promoter of the C<Subscript>4</Subscript> species <Emphasis Type="Italic">Flaveria trinervia</Emphasis>: the role of the proximal promoter region

Background  

The key enzymes of photosynthetic carbon assimilation in C₄ plants have evolved independently several times from C₃ isoforms that were present in the C₃ ancestral species. The C₄ isoform of phosphoenolpyruvate carboxylase (PEPC), the primary CO₂-fixing enzyme of the C₄ cycle, is specifically expressed at high levels in mesophyll cells of the leaves of C₄ species. We are interested in understanding the molecular changes that are responsible for the evolution of this C₄-characteristic PEPC expression pattern, and we are using the genus Flaveria (Asteraceae) as a model system. It is known that cis-regulatory sequences for mesophyll-specific expression of the ppcA1 gene of F. trinervia (C₄) are located within a distal promoter region (DR).     

Novel Mutation of the <Emphasis Type="Italic">GPIIIa</Emphasis> Gene in the Russian Population, <Emphasis Type="Italic">Leu40Arg</Emphasis>, Linked to the <Emphasis Type="Italic">Leu33Pro</Emphasis>

Glycoprotein IIb/IIIa complex, a platelet surface fibrinogen receptor, plays a key role in producing primary hemostasis. At present, only a single mutation in the GPIIIa gene, Leu33Pro, and a single mutation in the GPIIb gene, Ile843Ser, has been described. The mutations are known to enhance signaling functions of the receptor and are associated with the development of arterial thromboses. In the present study, we describe a novel GPIIIa mutation, which is T to G nucleotide substitution in position 1585, resulting in the replacement of Leu for Arg in position 40 of the amino acid sequence of the protein.__________Translated from Genetika, Vol. 41, No. 6, 2005, pp. 838–843.Original Russian Text Copyright © 2005 by Sirotkina, Shaydina, Vavilova, Schwartz.     

Vegetation of the aquatic and marshland habitats in the Orava region,including the first records of <Emphasis Type="Italic">Potametum alpini,Potametum zizii</Emphasis> and <Emphasis Type="Italic">Ranunculo-Juncetum bulbosi</Emphasis> in the territory of Slovakia

The vegetation of the aquatic and marshland habitats of the Orava region (north of Slovakia) was studied in 2009, using traditional phytosociological methods. Sixteen aquatic and eighteen marsh plant communities were described within 96 phytosociological relevés by using TWINSPAN with the application of the dominance principle. Three associations, Potametum alpini, Potametum zizii and Ranunculo-Juncetum bulbosi, were found as new communities for Slovakia. Myriophylletum verticillati, Potametum nodosi, Potametum graminei and Alisma gramineum community were recorded in the northernmost localities in Slovakia. Among marsh communities, Calletum palustris is very rare, both in the Orava region and in Slovakia as a whole. According to Ellenberg’s indicator values (EIV), moisture was evaluated as the main ecological gradient. Plant communities are ordered along the first Detrended Correspodence Analysis (DCA) axis in a typical hydroseries (Potametea → Lemnetea → Phragmition communis → Phalaridion arundinaceae, Oenanthion aquaticae and Sparganio-Glycerion → Magnocaricion elatae). The second DCA axis was most correlated with EIV for nutrients. Among the five directly measured ecological characteristics (temperature, pH and conductivity of water, water depth, and substrate type), conductivity of water (0.44, P < 0.01) and substrate type (0.32, P < 0.05) were the statistically significant variables explaining the variability along the first DCA axis.     

The changes in the predatory behavior of the microturbellarian <Emphasis Type="Italic">Stenostomum sphagnetorum</Emphasis> on two species of toxin-secreting ciliates of the genus <Emphasis Type="Italic">Spirostomum</Emphasis>

It is known that the microturbellarian Stenostomum sphagnetorum, a common ciliate predator, is very sensitive against different types of toxins produced by other ciliates for chemical defense, and consequently, it is not able to capture and ingests these ciliates. In particular, when the predator tries to attack one of these toxin-secreting ciliates, it is forced to regurgitate the captured prey in response to the toxin discharged from the ciliates. In this study it is shown that after repeated attacks by S. sphagnetorum against two species of toxic ciliates (Spirostomum ambiguum and Spirostomum teres), the predator acquires a behavior of prey selection that leads to the exclusion of these ciliates among the possible prey and to the distinction between edible and inedible (toxic) ciliates. This learned behavior, which is maintained for days, is lost only after the asexual reproduction of the microturbellarian. In addition, S. sphagnetorum learns to recognize and avoid specimens of S. ambiguum and S. teres artificially deprived of their toxins, strongly suggesting that the toxins are not exclusively associated in the prey recognition of the microturbellarian.     

On the genetic uniformity of the genus <Emphasis Type="Italic">Trichoplax</Emphasis> (Placozoa)

Fragments of the nuclear and mitochondrial genes for the large-subunit rRNA were compared for Trichoplax sp. and T. adhaerens. High similarity was observed for their sequences, suggesting that different Trichoplax isolates belong to one species.Translated from Genetika, Vol. 40, No. 12, 2004, pp. 1714–1716.Original Russian Text Copyright © 2004 by Aleoshin, Konstantinova, Nikitin, Okshtein.     

Origin of the Genus <Emphasis Type="Italic">Homo</Emphasis>

The origin of the genus Homo in Africa signals the beginning of the shift from increasingly bipedal apes to primitive, large-brained, stone tool-making, meat-eaters that traveled far and wide. This early part of the human genus is represented by three species: Homo habilis, Homo rudolfensis, and Homo erectus. H. habilis is known for retaining primitive features that link it to australopiths and for being the first stone tool makers. Little is known about H. rudolfensis except that it had a relatively large brain and large teeth compared to H. habilis and that it overlapped in time and space with other early Homo. Our understanding of the paleobiology and evolution of the larger-brained H. erectus is enhanced due to its rich fossil record. H. erectus was the first obligate, fully committed biped, and with a body adapted for modern striding locomotion, it was also the first in the human lineage to disperse outside of Africa. The early members of the genus Homo are the first to tip the scale from the more apish side of our evolutionary history toward the more human one.     

Study of the enhancer-blocking activities of new boundaries in the <Emphasis Type="Italic">bithorax</Emphasis> complex of <Emphasis Type="Italic">Drosophila melanogaster</Emphasis>

It was shown earlier that the Mcp, Fab-7, and Fab-8 boundaries of the bithorax complex contain insulators that effectively block the enhancers of the yellow and white genes. Other boundaries have not been studied so far. The recent mapping of binding sites for the insulator protein dCTCF in the regulatory regions of the bithorax complex genes permitted the Fab-3, Fab-4, and Fab-6 boundaries to be localized. Here, we showed that, despite the presence of dCTCF-binding sites, fragments of the Fab-3, Fab-4, and Fab-6 boundaries do not exhibit the properties of insulators in the model system with the yellow and white genes. Moreover, in some regions of the genome the Fab-4 and Fab-6 boundaries display the properties of silencers.     

Medium optimization for the feather-degradation by <Emphasis Type="Italic">Streptomyces fradiae Var</Emphasis><Emphasis Type="Italic">S-221</Emphasis> using the response surface methodology

In order to accelerate biodegradation of feather into more amino acids, the fermentation medium of feather-biodegrading Streptomyces fradiae Var S-221 was optimized in this paper. In the first optimization step, the effects of feather powder, beet molasses, (NH₄)₂SO₄ and KH₂PO₄ on amino acids formation were evaluated by using full factorial design. The results showed that feather powder and (NH₄)₂SO₄ had significant and positive effects on feather-biodegradation into amino acids. Then, the method of the steepest ascent was used to access the optimal region of the two significant factors. In the third step, the concentration of feather powder and (NH₄)₂SO₄ were further optimized with central composite design and response surface analysis. As a result, the composition of the optimal medium for S. fradiae Var S-221 fermentation were as follows (g/100 ml): feather powder, 19.504; beet molasses, 4.0; (NH₄)₂SO₄, 1.467; KH₂PO₄, 0.3; MgSO₄, 0.15; FeSO₄, 0.001; ZnSO₄, 0.0001; and MnSO₄, 0.0001. Using this optimal fermentation medium, the amino acids concentration was increased from 4.61 to 6.13 g/100 ml.     

Decreased competiveness of the foodborne pathogen <Emphasis Type="Italic">Campylobacter jejuni</Emphasis> during Co-culture with the hyper-ammonia producing anaerobe <Emphasis Type="Italic">Clostridium aminophilum</Emphasis>

Campylobacter spp. are a leading bacterial cause of human foodborne illness. When cocultured in anaerobic Bolton broth with the hyper-ammonia producing bacterium, Clostridium aminophilum, ammonia accumulation was greater and final growth of Campylobacter jejuni was reduced (CFU ≥ 1.4 log₁₀/mL) compared to that obtained by pure culture controls. Co-culture with the less active ammonia-producing saccharolytic Prevotella albensis had no effect on final C. jejuni concentrations. When co-cultured similarly except with the addition of 10 μmol/L monensin, monensin-susceptible Cl. aminophilum was reduced by 2 to 4 log₁₀ CFU/mL and concentrations of C. jejuni, which is insensitive to monensin, did not differ from its pure culture control. These results suggest that in the absence of added monensin, the hyper ammonia-producing Cl. aminophilum may be able to outcompete asaccharolytic C. jejuni for amino acid substrates and that this competitive ability was eliminated by addition on monensin.     

Conservation of <Emphasis Type="Italic">ParaHox</Emphasis> genes' function in patterning of the digestive tract of the marine gastropod <Emphasis Type="Italic">Gibbula varia</Emphasis>

Background  

Presence of all three ParaHox genes has been described in deuterostomes and lophotrochozoans, but to date one of these three genes, Xlox has not been reported from any ecdysozoan taxa and both Xlox and Gsx are absent in nematodes. There is evidence that the ParaHox genes were ancestrally a single chromosomal cluster. Colinear expression of the ParaHox genes in anterior, middle, and posterior tissues of several species studied so far suggest that these genes may be responsible for axial patterning of the digestive tract. So far, there are no data on expression of these genes in molluscs.     

Modeling the interaction between the exotic invasive aquatic macrophyte <Emphasis Type="Italic">Myriophyllum spicatum</Emphasis> and the native biocontrol agent <Emphasis Type="Italic">Euhrychiopsis lecontei</Emphasis> to improve augmented management programs

Mathematical modeling is used to investigate control of the invasive aquatic plant Myriophyllum spicatum L. by the native watermilfoil weevil Euhrychiopsis lecontei Dietz. An age-structured population model with discrete development class is used to separate the destructive activity of Euhrychiopsis lecontei Dietz larvae from the relatively benign activity of the other developmental stages. Empirical model behavior is evaluated and agrees with expected system characteristics. Simulation results demonstrate diminishing returns in the control impact of E. lecontei Dietz as a function of population stocking density. These results indicate that predictive modeling of this type may be used to optimize the utilization of Euhrychiopsis lecontei Dietz as a biological control agent.     

Biophysical mechanisms of physiological water exchange with the surroundings by the cells of the <Emphasis Type="Italic">Nitella translucens</Emphasis> and <Emphasis Type="Italic">Chara corallina</Emphasis> plants

In the present study, we discussed the biophysical mechanisms of stationary water exchange with the surroundings by the Nitella translucens and Chara corallina plants. It was postulated that these plants, which subsist under total immersion in a water medium, conduct water exchange within single cells individually. With the application of the equations of mechanistic formalism for membrane transport to our investigations (Kargol and Kargol 2000, Kargol 2001, Kargol 2002, Kargol and Kargol 2003, 2003*), it was demonstrated that individual cells of these plants can simultaneously absorb and remove considerable amounts of water at constant cell volume, i.e. under stationary conditions. Water absorption is osmosis-driven, and its removal is effected by the cell turgor pressure.     

Interspecific differences in drift behaviour between the native <Emphasis Type="Italic">Gammarus pulex</Emphasis> and the exotic <Emphasis Type="Italic">Gammarus roeseli</Emphasis> and possible implications for the invader’s success

“Drifting” is known to subject aquatic invertebrates to intense predation by drift feeding fish. Consequently, interspecific variations in drifting behaviour could lead to differences in predation pressure between coexisting prey species. Predation being an important factor determining the success of invaders, differences in drift patterns could advantage either native or exotic invertebrates through differential predation by native fish predators. The exotic freshwater amphipod (Gammarus roeseli) has now largely colonized Western Europe where it is often found in sympatry with a native species (Gammarus pulex). Here we documented interspecific differences in drifting behaviour that might have favored the invader’s success through differential predation. Benthic and drifting amphipods were sampled three times at the same site to compare the proportion of each species within and between sample types (benthos or drift) across time. Compared with the benthos, where the invader (G. roeseli) was significantly less abundant than the native (G. pulex), G. roeseli was proportionally overrepresented in the drift but displayed a very different drifting pattern. While G. pulex drift rates remained roughly constant over a 24 h period, G. roeseli showed a marked diel periodicity with low diurnal and high nocturnal drift rates. Such drifting behaviour could procure this species with a competitive advantage regarding predation as most drift feeding fish are diurnal. As a result, the native appears more disadvantaged with respect to drift. This may partly explain the ability of G. roeseli to coexist with G. pulex in a habitat more suitable to the native.