Molecular taxonomy and phylogeny of the Geodiidae (Porifera, Demospongiae, Astrophorida) – combining phylogenetic and Linnaean classification

Cárdenas, P., Rapp, H. T., Schander, C. & Tendal, O. S. (2009). Molecular taxonomy and phylogeny of the Geodiidae (Porifera, Demospongiae, Astrophorida) – combining phylogenetic and Linnaean classification.—Zoologica Scripta, 39, 89–106. According to the fossil records, the Geodiidae represents one of the oldest families of demosponges (Phylum Porifera). There are approximately 220 described extant species, geographically and bathymetrically widely distributed around the world. Species of this family all share a two-layered cortex with ball-shaped spicules called ‘sterrasters’ in the endocortex. However, molecular studies have questioned the monophyly of the group. Moreover, the evolutionary history and the intrafamily relationships of the Geodiidae are not fully resolved. Using a partial sequence of the cytochrome c oxidase subunit 1 (COI) gene and a partial sequence of the 28S rDNA gene (D1–D2 domains), we present the first molecular phylogeny focusing on this group. The congruent results from the two gene fragments suggest that (i) the Geodiidae is monophyletic, (ii) the Erylinae/Geodinae subdivision sensu Sollas, 1888 is valid and that (iii) Isops and Sidonops are junior synonyms of Geodia. The synonymization of Isops and Sidonops implies that the oscule/pore morphology as a diagnostic character should be abandoned. Geodia hentscheli nom. nov. has been given for Geodia mesotriaena ( Hentschel, 1929 ). This study served as the basis for a revised phylogenetic classification of the Geodiidae. Well-supported clades led to the establishment of clade names following the PhyloCode. The Geodinae clade is strongly supported and notably composed of Depressiogeodia, Cydonium and Geodia. A morphological synapomorphy of Geodinae is the presence of euasters in the ectocortex. The Erylinae (Erylus, Penares, Caminus and Pachymatisma) form a strongly supported monophyletic group with three morphological synapomorphies: (i) loss of anatriaenes and protriaenes, (ii) microrhabds (or spherules) in the ectocortex and (iii) short-shafted triaenes. The Erylus monophyly is ambiguous. Erylus species are distributed in three well-supported clades. Finally, spicule homology in the cortex of the Geodiidae is discussed.     

Molecular phylogenies challenge the classification of Polymastiidae (Porifera,Demospongiae) based on morphology

Polymastiidae Gray, 1867 is a worldwide distributed sponge family, which has a great significance for understanding of the demosponge deep phylogeny since the former order Hadromerida Topsent, 1894 has been recently split based on the molecular evidence and a new separate order has been established for the polymastiids. However, molecular data obtained from Polymastiidae so far are scarce, while the phylogenetic reconstruction based on morphology has faced a deficit of characters along with the vagueness of their states. The present study is a phylogenetic reconstruction of Polymastiidae based on novel data on two molecular markers, cytochrome oxidase subunit I and large subunit ribosomal DNA, obtained from a broad set of species. Monophyly of the family and nonmonophyly of four polymastiid genera are revealed, suggesting a high level of homoplasy of morphological characters, which are therefore not an appropriate base for the natural classification of Polymastiidae. Although the presented phylogenies cannot yet provide an alternative classification scheme, several strongly supported clades, which may be used as reference points in future classification, are recovered and three taxonomic actions are proposed: transfer of one species from Radiella to Polymastia Bowerbank, 1862; transfer of three species from Radiella Schmidt, 1870 to Spinularia Gray, 1867; and the consequent abandonment of Radiella.     

Multiple data sets, high homoplasy, and the phylogeny of softshell turtles (Testudines: Trionychidae)

We present a phylogenetic hypothesis and novel, rank-free classification for all extant species of softshell turtles (Testudines:Trionychidae). Our data set included DNA sequence data from two mitochondrial protein-coding genes and a approximately 1-kb nuclear intron for 23 of 26 recognized species, and 59 previously published morphological characters for a complimentary set of 24 species. The combined data set provided complete taxonomic coverage for this globally distributed clade of turtles, with incomplete data for a few taxa. Although our taxonomic sampling is complete, most of the modern taxa are representatives of old and very divergent lineages. Thus, due to biological realities, our sampling consists of one or a few representatives of several ancient lineages across a relatively deep phylogenetic tree. Our analyses of the combined data set converge on a set of well-supported relationships, which is in accord with many aspects of traditional softshell systematics including the monophyly of the Cyclanorbinae and Trionychinae. However, our results conflict with other aspects of current taxonomy and indicate that most of the currently recognized tribes are not monophyletic. We use this strong estimate of the phylogeny of softshell turtles for two purposes: (1) as the basis for a novel rank-free classification, and (2) to retrospectively examine strategies for analyzing highly homoplasious mtDNA data in deep phylogenetic problems where increased taxon sampling is not an option. Weeded and weighted parsimony, and model-based techniques, generally improved the phylogenetic performance of highly homoplasious mtDNA sequences, but no single strategy completely mitigated the problems of associated with these highly homoplasious data. Many deep nodes in the softshell turtle phylogeny were confidently recovered only after the addition of largely nonhomoplasious data from the nuclear intron.     

Ultrastructural study of spermatogenesis in Oscarella lobularis (Porifera,Demospongiae)

Summary

The various phases of spermatogenesis in the demosponge Oscarella lobularis were studied by electron microscopy. Spermatogenesis occurs within spermatic cysts, which are presumed to derive from choanocyte chambers by transformation of choanocytes into spermatogonia. Germ cells develop asynchronously within spermatocysts, and cytoplasmic bridges, indicating incomplete cells division, connect several germ cells. Attached spermatogonia suggest gonial generations. Spermatocytes I typically show the presence of synaptonemal complexes indicating meiotic divisions. Spermatocytes II have a small size probably because of the meiotic divisions of spermatocytes I. Spermatids are characterized by an acrosome, a big mitochondrion and a peripheral sheath of condensed chromatin surrounding a clearer central area in the nucleus. The mature spermatozoon shows a lateral flagellum and a flattened acrosome capping the nucleus. The phylogenetic implications of some features of the spermatozoon are suggested.     

Dynamic structure of the mesohyl in the sponge Chondrosia reniformis (Porifera, Demospongiae)

The common demosponge Chondrosia reniformis possesses the capacity to undergo an unusual creep process which results in the formation of long outgrowths from the parent body. These shape changes, which have been interpreted as adaptive strategies related to environmental factors, asexual reproduction or localised locomotor phenomena, are due mainly to the structural and mechanical adaptability of the collagenous mesohyl. This contribution describes the morphological correlates of mesohyl plasticisation in C. reniformis. The microscopic anatomy of the mesohyl was examined when it was in different physiological conditions: (1) standard ”resting” condition, (2) ”stiffened” condition and (3) dynamic ”creep” condition. In this last case four representative regions of the sponge body were analysed: the parent region, the elongation region, the transition region and the propagule region. The results show that the histological modification of the sponge mesohyl during plasticisation is limited and localised. The most significant structural changes involve mainly cytological features of specific cellular components characterised by granule inclusions (i.e. the spherulous cells) and the arrangement and density of the collagenous extracellular framework, though the integrity of the collagen fibrils themselves is not affected. Morphological and functional aspects of mesohyl plasticisation invite comparison with the mutable collagenous tissue of echinoderms. Possible functional analogies between these two tissues are hypothesised. Accepted: 29 June 2001     

Post-larval development of the commercial sponge Spongia officinalis L. (Porifera, Demospongiae)

This study investigated the development of the larvae of Spongia officinalis in experimental conditions, after settlement on plastic substrates, using electron and light microscopy. The released larvae show a dark pigmented ring distinguishes the posterior larval pole. The youngest larvae, covered with a flagellate epithelium, move onwards by rotating on their longitudinal axis. Over time a creeping-like motion prevails, probably linked to the need for settlement. After a free-swimming period of 24-48 h, larvae settle on the artificial substrate by the anterior pole. At settlement, the flagellate epithelium is substituted by flattened cells, which delimit the outermost surface. Post-larvae were reared to about three months. The early phase of post-larval differentiation shows a solid interior mainly consisting of granular cells varying in shape and size. They are included in a dense collagen matrix that contains a conspicuous amount of bacteria. Lacunae are already evident in the initial phase of metamorphosis. In several of them, cell debris and nucleate cells are visible. This feature is consistent with a progressive reduction of the cell mass (autolysis). Neither choanocyte chambers nor canals differentiate. The morphogenetic process leads to a metamorph only consisting of vacuolated cells and collagen fibrils included in a thin fibrous coat.     

Silica spicules and axial filaments of the marine sponge Stelletta grubii (Porifera,Demospongiae)

Summary In all cases an organic axial filament within the silica spicules of Stelletta grubii forms the core of the major axes of the glass. In the small, star-shaped silica spicules (asters) the filament is shown for the first time to be radial with an enlarged center; in the large four-rayed spicules (triaenes) it is four-rayed; and in the large single-rayed spicules (oxeas) the filament is single-rayed. In situ, the filament is not dissolved by boiling nitric acid and thus is apparently protected by encasement within the glass which can also be stratified. The small silica asters are formed by single cells which resemble the so-called spherulous cells of other sponges. The very large size of triaenes and oxeas suggests that they may possibly be formed by more than one cell. The diameter of the filament in the much smaller asters is much narrower than the filament in the larger spicules, indicating a possible relationship between filament diameter and spicule diameter. While the axial filament in larger spicules frequently has a triangular cross-section it can also be hexaognal. Some aster filaments also retain a close to hexagonal cross-section. Filaments freed from large spicules by hydrofluoric acid display a complex morphology; possibly there is an internal silicified core. Some reported aspects of filament morphology are, however, probably artefacts of desilicification with hydrofluoric acid. Offprint requests to: T.L. Simpson, Department of Biology, University of Hartford, West Harford, Connecticut 06117, USA (Permanent affiliation)     

Investigation of the budding process in Tethya citrina and Tethya aurantium (Porifera, Demospongiae)

The budding process has been studied in two congeneric Mediterranean species belonging to Tethya from different sampling sites: Marsala and Venice Lagoons (Tethya citrina); Marsala Lagoon and Porto Cesareo Basin (Tethya aurantium). Buds, connected to the adult by a spiculated stalk, differ between the two species in morphology and size, since those of T. citrina are small with elongated bodies, showing only a few spicules protruding from the apical region, whereas those of T. aurantium are round, larger, and show spicules radiating from the peripheral border. In T. citrina, cells with inclusions, varying in electron density and size, represent the main cell types of the buds. In T. aurantium, the cell component shows a major diversification, resulting from spherulous cells, grey cells, vacuolar cells and peculiar micro-vesicle cells. Neither canals nor choanocyte chambers were observed in the buds of the two species. In T. citrina, bud production is similar in both sampling sites. In T. aurantium, budding occurs more rarely in Porto Cesareo Basin, probably in relation with environmental factors, such as the covering of the cortex by sediment and micro-algae. Finally, in the buds of both species, the spicule size does not differ from that of the cortex of the adult sponges, further supporting the main involvement of the cortex in organizing the skeletal architecture of the buds.     

A phylogenetic interpretation of hamacanthids (Demospongiae, Porifera), with the redescription of Hamacantha popana

The study of the phylogenetic relationships of Hamacantha Gray. 1867 showed it to be more closely related to mycalids than to desmacellids, on the basis of its highly cavernous choanosome with stout ascending tracts of megascleres, easily detachable ectosome with a reticulation of megasclere bundles, and presence of rosettes and of true toxa. Since Pozziella Topsent, 1896 is recognized as a good genus, close to Hamacantha. the family name Hamacanthidae Gray, 1872 may be retained for this assemblage. This family is the sister-group of the Mycalidae Lundbeck, 1905 branch, and they both have Desmacellidae Ridley & Dondy, 1886 as sister-group. A cladogram expressing these relationships is provided and compared with previous ones in the literature. Mycalidae, Hamacanthidae, Desmacellidae, Cladorhizidae and 'guitarrids' form a monophyletic group by sharing two derived characters: faintly-necked styles, and sigmancistra derivatives.     

Epibiontic and endobiontic polychaetes of Geodia cydonium (Porifera,Demospongiae) from the Mediterranean Sea

Polychaete assemblages associated to the sponge Geodia cydonium were investigated at two sampling sites in the Mediterranean Sea: Porto Cesareo Basin (Apulia) and Marsala Lagoon (Sicily), both characterized by sheltered hydrodynamic conditions. Samples were seasonally performed during 1997, in order to compare the assemblages coming from the two localities studied, considering separately the internal and external tissues of the sponge, and with the aim of evaluating the influence of sponge size on polychaete colonization. The examined sponge is characterized by a peculiar stratification of its tissues: an external thick and hard layer, the cortex, and an internal softer one, the choanosome. Statistical analysis showed that this was the main factor controlling polychaete assemblage, with the internal tissue, less rich and diversified, appearing impoverished with respect to the external layer. A similarity in species composition was observed between sites, even though some differences were evidenced in the abundance of some species, mainly reflecting differences in local environmental conditions. Species richness and density increased with the increasing sponge size. Such a situation is particularly evident at Porto Cesareo, where sponges are covered by an algal layer which is particularly rich on the largest specimens, thus suggesting that most of the species of polychaetes were linked more to the neighbouring environment than to the sponge itself.     

Morphological and genetic differences in ecologically distinct populations of Petrosia (Porifera, Demospongiae)

The taxonomic status of two sponge tnorphotypes living sympatrically in Mediterranean caves and usually ascribed to Petrosia ficiformis was elucidated on the basis of morphological, morphometric and genetic features. The two morphotypes, spherical and cylindrical, showed differences in the shape and size of spicules and in the morphology of the aquiferous system. Electrophoretic analyses demonstrated that the two morphotypes are reproductively independent and so they should be considered as distinct biological species. The spicular features allow attribution of the cylindrical morphotype to P.ficiformis and the spherical one to P. clavata. For these two species parasympatric speciation is proposed.     

Interspecific variation in arrangement and morphology of micrasters of Tethya species (Porifera,Demospongiae)

Summary A new distinctive feature between the two Mediterranean species of Tethya, T. aurantium and T. citrina has been found in the body arrangement of different types of micrasters. Contrary to the previous assumptions, T. aurantium has two clearly distinct categories of micrasters: the chiaster-tylaster in the cortex and the larger, slender oxyaster in the choanosome. T. citrina has only slightly differentiated micraster sets in the cortex and choanosome; in the latter the shape of micrasters is close to that of oxyasters. SEM analysis shows that differences in micraster shape depend on the cylindrical or conical form of rays and on the distribution, density and strength of the microspines along their axis. The relationship between the degree of micraster differentiation and the development of the cortex in the two species is discussed.     

Skeletal structures and habitats of Recent and fossil Acanthochaetetes (subclass Tetractinomorpha,Demospongiae, Porifera)

The investigation of the habitats, the spicular skeletons, and the structure and chemistry of the nonspicular high-Mg calcite skeletons of a fossil Acanthochaetetes from the Late Albian (Cretaceous) of Northern Spain and the extant Acanthochaetetes wellsi from Pacific reefs demonstrates an astonishing correspondence. The skeletons of both species are hemispherical or pyriform with the lower part containing an epitheca. They are built up of single calicles which are subdivided by tabulae. Spines protrude from the walls into the calicles. Scanning electron microscopy and thin sections reveal that the high-Mg calcite skeleton consists of two different microstructures: a irregular ssensu Wendt 1979 or microlamellar (sensu Cuif et al. 1979) and a completely irregular structure. AAS and EDAX analysis of the calcite skeletons produce roughly the same Mg and Sr contents. Tylostyle megascleres and aster-like microscleres are observed in the spicular skeletons of both species. The only difference between the two species is the greater variability of the microscleres in the extant species. Moreover, the fossil species incorporates the scleres in the non-spicular skeleton, while the extant species does not. Both species live/lived in the same niches of tropical reefs: the cryptic habitats of submarine caves in the reef core and the dimly lighted habitats of the deeper fore-reef.     

Structure and swimming behavior of the larva of Halichondria melanadocia (Porifera: Demospongiae)

Larvae of the sponge Halichondria melanadocia are of the parenchymella type and, during swimming, can change shape rapidly from cigar-like to ovoid. Larvae collected in Hawaii displayed neither qualitative nor quantitative differences in behavior or structure from those collected in Florida. Floridian larvae were examined at 2, 28, 48, and 72 hr after release to assess anatomical changes correlated with duration of the free-swimming period. Although 2 hr larvae were significantly longer than 48 or 72 hr larvae, other differences were not observed. Positively phototactic throughout the free-swimming period, the larvae eventually begin to swim on or near the bottom of dishes, settle temporarily, but can resume swimming before permanent settlement is achieved. The larva is extensively flagellated and a band of long flagella separates the lateral and posterior regions. The epidermis is a tall, simple columnar epithelium composed of highly polarized, monoflagellated cells. The interior contains at least two distinct amoeboid cell types that intermesh with the basal ends of epidermal cells within a loosely defined cavity. No spicules are present. Choanocyte chambers, found within 3 of the 50 larvae that were serially sectioned, varied in size and complexity, but were not associated with canals. This report is the-first of such chambers in Halichondria larvae. Spicules and choanocyte chambers are somatic structures associated with adults, and their appearance in larvae is presumably a consequence of a heterochronic event, most likely acceleration. The evolutionary significance of the occurrence of these traits in Halichondria larvae awaits further developmental analysis and greater phylogenetic resolution.     

Morphological and ecological differences in two electrophoretically detected species of Cliona (Porifera, Demospongiae)

The taxonomie status of different morphotypes generally ascribed to the species of boring sponge Cliona viridis is examined. Morphometric, ecological and genetic differences between two morphotypes living sympatrically on rocky shores of the Ligurian Sea are considered. Morphotype 1 is characterized by small, well separated papillae (α stage), exclusively boring into the crust of coralline algae on the exposed rocky bottoms of the upper sublittoral zone. Morphotype 2 shows bigger papillae, often connected by portions of encrusting tissue ( β stage), and is predominantly found boring into organogenic concretions in slightly lighted habitats. Measurements of tylostyles indicate that morphotype 1 has spicules significantly smaller than morphotype 2. Electrophoretic analysis shows that the two morphotypes are fixed for different alleles at all four loci scored, indicating absence of gene flow between the two populations, i.e. they appear to be distinct biological species.