双孢蘑菇子实体不同发育时期的转录组分析

双孢蘑菇是世界第一大宗栽培食用菌,具有重要经济价值。为探讨双孢蘑菇子实体不同发育时期基因表达变化,利用高通量测序技术对双孢蘑菇原基期、采收期和开伞后期等不同发育时期进行RNA‐Seq分析,共筛选到6 328个差异表达基因,其中3 941个上调基因,2 387个下调基因。Gene Ontology(GO)功能聚类分析表明,差异表达基因主要富集在结合、催化分子功能组和代谢过程生物学通路中,且发育过程和有性繁殖相关的基因全部为上调表达,以利于细胞分化发育形成成熟子实体进入生殖生长阶段。KEGG功能富集分析结果表明,差异基因参与了氨基酸代谢、碳水化合物代谢、核苷酸代谢、脂类代谢和能量代谢这五大代谢通路,其中差异基因主要富集在氨基酸代谢通路中,氨基酸合成相关的多数基因上调表达,表明双孢蘑菇子实体发育形成需要一系列代谢反应协同调控,氨基酸代谢相关基因可能在双孢蘑菇子实体发育过程中起重要作用。本文通过全面分析双孢蘑菇子实体发育时期基因表达变化,获得了大量转录本信息,为深入了解双孢蘑菇子实体发育调控分子机理和相关功能基因提供了重要的基因数据资源。     

Uptake of potassium by rice plants at different stages of growth

Uptake of potassium by rice plants at different stages of growth can be described by a biphasic isotherm in the range of 5 × 10^?5 M and is probably mediated bya multiphasic mechanism in the plasmalemma.     

Diallel analysis of tiller number at different growth stages in rice (Oryza sativa L.)

Summary The genetics of tiller number at different development stages in rice was studied in a 6 x 6 diallel cross set involving six indica rice varieties in which a large difference of phenotypes existed. Estimates of genetic parameters following Hayman's method showed significant additive and nonadditive gene action, and the latter appeared to be solely due to dominance. High tillering ability was inherited as a partial dominant character conditioned by two or more blocks of genes, and var H1459 had more dominant genes, whereas Zhu-Yun-Luo had more recessive ones. Combining ability analysis by Griffing's method also indicated significance of both additive and nonadditive effects, but the former was more important than the latter. H1459 and Bi-Yu-Zao-Luo were good general combiners, and their hybrids H1459 x Le-Yi and Zhu-Yun-Luo x Bi-Yu-Zao-Luo were better crosses for combining an optimum tiller number with high percentage of productive tiller. An identical polygenic system appeared to be responsible for the genetic control of both tiller number at the different growth stages and the terminal character, productive tiller number. However, with growth of the plant, relative contributions of nonadditive gene action and environmental factors to the variation decreased, while those of additive gene action increased. Selection for high tillering ability, therefore, should be exercised at peak tillering or later stages.     

Requirement for N-ethylmaleimide-sensitive factor activity at different stages of bacterial invasion and phagocytosis

Bacterial invasion, like the process of phagocytosis, involves extensive and localized protrusion of the host cell plasma membrane. To examine the molecular mechanisms of the membrane remodeling that accompanies bacterial invasion, soluble NSF attachment protein receptor (SNARE)-mediated membrane traffic was studied in cultured cells during infection by Salmonella typhimurium. A green fluorescent protein-tagged chimera of VAMP3, a SNARE characteristic of recycling endosomes, was found to accumulate at sites of Salmonella invasion. To analyze the possible role of SNARE-mediated membrane traffic in bacterial infection, invasion was measured in cells expressing a dominant-negative form of N-ethylmaleimide-sensitive factor (NSF), an essential regulator of membrane fusion. Inhibition of NSF activity did not affect cellular invasion by S. typhimurium nor the associated membrane remodeling. By contrast, Fcgamma receptor-mediated phagocytosis was greatly reduced in the presence of the mutant NSF. Most important, dominant-negative NSF significantly impaired the fusion of Salmonella-containing vacuoles with endomembranes. These observations indicate that the membrane protrusions elicited by Salmonella invasion, unlike those involved in phagocytosis, occur via an NSF-independent mechanism, whereas maturation of Salmonella-containing vacuoles is NSF-dependent.     

Phosphorus uptake rates of cotton roots at different growth stages from different soil layers

A greenhouse experiment was conducted to determine P uptake at different growth stages by cotton plants from upper and lower 30 cm layers of 60 cm deep uniform soil columns. A radioisotope tracer technique was used to separate uptake from the two soil layers. Root lengths were measured in both layers at each growth stage. P fluxes were calculated for each layer. Root length increased significantly with time from square formation through peak flowering. At all growth stages, total P uptake from the upper soil layer was greater than that from the lower soil layer. P flux from either layer was greater during early growth stages than during later stages. A significant decrease in P flux occurred when plants reached the flowering stage. The flux from the upper layer was about twice that from the lower layer at square forming stage but the difference decreased as the plants matured. Both layers showed similar P fluxes at the first open boll stage. Our data indicate that roots located 30 to 60 cm below the surface are less effective per unit root length than those located at 0 to 30 cm depth when all roots are in the same soil environmental conditions. However, the effectiveness of P absorption from different soil depths under field conditions may depend on the environmental conditions that exist in each soil depth.     

Photosynthesis and growth of winter wheat in response to waterlogging at different growth stages

A study on photosynthetic and yield effects of waterlogging of winter wheat at four stages of growth was conducted in specially designed experimental tanks during the 2007–2008 and 2008–2009 seasons. Compared with the control, waterlogging treatments at tillering and jointing-booting stages reduced photosynthetic rate (P _N) and transpiration (E) significantly, it also decreased average leaf water-use efficiency (WUE, defined as the ratio of P _N to E) by 3.3% and 3.4% in both years. All parameters returned quickly to the control level after soil was drained. Damage to the photosynthetic apparatus during waterlogging resulted in a lower F_v/F_m ratio, especially at the first two stages. A strong reduction in root length, root mass, root/shoot ratio, total dry mass, and leaf area index were observed. The responses from vegetative plants at tillering and jointing-booting stages were greater than in generative plants at onset of flowering and at milky stages. The number of panicles per hectare at tillering stage and the spikelet per panicle at the stages of jointing-booting and at onset of flowering were also significantly reduced by waterlogging, giving 8.2–11.3% decrease of the grain yield relative to the control in both years. No significant difference in yield components and a grain yield was observed between the control and treatments applied at milky stages. These responses, modulated by the environmental conditions prevailing during and after waterlogging, included negative effects on the growth, photosynthetic apparatus, and the grain yield in winter wheat, but the effect was strongly stage-dependent.     

Composition of membranes and mycelia ofStreptomyces levoris at different stages of growth

The composition of cell membranes and mycelia ofStreptomyces levoris, producer of the polyene antibiotic levorin, was studied. The membrane protein/lipid ratio was shown to be constant during growth of the microorganism. The membrane protein was found to be heterogeneous and to have a low molecular weight. The lipid component of the membranes consisted mainly of polar lipids—phosphatidyl ethanolamine, diphosphatidyl glycerol, and phosphatidyl inositol mannoside being predominant. During growth, the phospholipid content of the polar lipid fraction decreased, apparently due to replacement of phospholipids by phosphorus-free analogs.     

Recruitment of exogenous macrophages into metastases at different stages of tumor growth

Summary The endogenous tumor-associated macrophage content and recruitment of labeled peritoneal exudate cells into experimental murine B16 melanoma metastases has been examined at different stages in the progressive growth of metastatic lesions. The recruitment of thioglycollate-elicited peritoneal exudate cells and peritoneal exudate cells activated in vitro with muramyl dipeptide was studied. Tumor-associated macrophages and labeled peritoneal exudate cells were identified in paraffin sections by specific histochemical staining and their density in individual metastases measured morphometrically. The density of tumor-associated macrophages and exogenously recruited peritoneal exudate cells was high in very small lesions but decreased rapidly as a function of enlargement of metastases, MD:Aⁿ; where MD is macrophage density, A is the cross-sectional area of the lesion and n is a negative number. No significant difference was observed in the recruitment of activated and nonactivated peritoneal exudate cells. These results suggest that decreased recrutiment of macrophages from the circulation may explain the decrease in the density of tumor-associated macrophages as metastases grow and indicate that macrophage activation is not accompanied by enhanced localization and/or uptake of macrophages into metastases.     

Diversity and dynamics of bacterial communities associated with Haematococcus pluvialis at different life stages

Journal of Applied Phycology - The physiological performance and productivity of microalgae are closely associated with their bacterial communities. Haematococcus pluvialis is an important...     

Mapping QTLs of root morphological traits at different growth stages in rice

Roots are a vital organ for absorbing soil moisture and nutrients and influence drought resistance. The identification of quantitative trait loci (QTLs) with molecular markers may allow the estimation of parameters of genetic architecture and improve root traits by molecular marker-assisted selection (MAS). A mapping population of 120 recombinant inbred lines (RILs) derived from a cross between japonica upland rice 'IRAT109' and paddy rice 'Yuefu' was used for mapping QTLs of developmental root traits. All plant material was grown in PVC-pipe. Basal root thickness (BRT), root number (RN), maximum root length (MRL), root fresh weight (RFW), root dry weight (RDW) and root volume (RV) were phenotyped at the seedling (I), tillering (II), heading (III), grain filling (IV) and mature (V) stages, respectively. Phenotypic correlations showed that BRT was positively correlated to MRL at the majority of stages, but not correlated with RN. MRL was not correlated to RN except at the seedling stage. BRT, MRL and RN were positively correlated to RFW, RDW and RV at all growth stages. QTL analysis was performed using QTLMapper 1.6 to partition the genetic components into additive-effect QTLs, epistatic QTLs and QTL-by-year interactions (Q x E) effect. The results indicated that the additive effects played a major role for BRT, RN and MRL, while for RFW, RDW and RV the epistatic effects showed an important action and Q x E effect also played important roles in controlling root traits. A total of 84 additive-effect QTLs and 86 pairs of epistatic QTLs were detected for the six root traits at five stages. Only 12 additive QTLs were expressed in at least two stages. This indicated that the majority of QTLs were developmental stage specific. Two main effect QTLs, brt9a and brt9b, were detected at the heading stage and explained 19% and 10% of the total phenotypic variation in BRT without any influence from the environment. These QTLs can be used in breeding programs for improving root traits.     

Genetic dissection of chlorophyll content at different growth stages in common wheat

Quantitative trait loci (QTLs) for chlorophyll content were studied using a doubled haploid (DH) population with 168 progeny lines, derived from a cross between two elite Chinese wheat cultivars Huapei 3 × Yumai 57. Chlorophyll content was evaluated at the maximum tillering stage (MS), the heading stage (HS), and the grain filling stage (GS), at three different environments in 2005 and 2006 cropping seasons. QTL analyses were performed using a mixed linear model approach. A total of 17 additive QTLs and nine pairs of epistatic QTLs were detected. Ten of 17 additive QTLs for chlorophyll content were persistently expressed at more than two growth stages, which suggest developmentally regulated loci controlling genetics for chlorophyll content in different growth stages in wheat. One novel major QTL for chlorophyll content was closely linked with the PCR marker Xwmc215 and was persistently expressed at three growth stages.     

Diurnal variation in methane efflux at different growth stages of tropical rice

Diurnal variation in CH₄ efflux from continuously flooded fields planted to rice (Oryza sativa L. cv. IR-36) was examined at different crop growth stages using a closed chamber method during the wet season. CH₄ emission showed a distinct diurnal pattern especially at tillering, panicle initiation and maturity stages of a field-grown rice crop, with maximum emission in the early afternoon (12.00 to 15.00) followed by a decline to a minimum around midnight. Among several variables (ambient temperature, flood water temperature, redox potential, soil pH, and root oxidase activity), a significant negative correlation existed between oxidase activity of the root base and diurnal fluctuations in CH₄ efflux at tillering stage. Evidence also suggested that redox status in the rhizosphere region and atmospheric, soil, and water temperatures influenced CH₄ emission from rice fields probably by their contrasting effects on CH₄ production and oxidation.     

Intensity of mycorrhizal infection and response of onion at different stages of growth

Summary A time course experiment was conducted to study the intensity of root infection and the response of onion. Mycorrhizal infection with internal hyphae and arbuscules was observed in onion roots 15 days after sowing and infection percentage progressively increased up to 35 days. Plants inoculated with the mycorrhizal fungus weighed less than non-mycorrhizal plants during initial stages up to 35 days but grew faster later after 38 days.     

Plant cells at different stages in their growth curve differentially activate promutagens

Mutagenic activity of the promutagens 2-aminofluorene (2AF) and a contaminant of 4-nitro-o-phenylenediamine (NOP-X) was followed in Ames Salmonella strain TA98 following metabolism by cotton and carrot cell suspension cultures using the plant cell/microbe coincubation assay. Both cell lines were capable of activating each chemical. However, activation capacities of the cell lines differed relative to their respective stage of growth when used. For 2AF activation early-log phase cotton cells and mid-log phase carrot cells proved superior while mid-log phase cotton cells and stationary phase carrot cells proved superior for NOP-X activation. These data indicate that the phase of the growth cycle at which plant cells are harvested can significantly affect their promutagen activation potential.     

Effects of powdery mildew at different growth stages on grain yield of barley

Pot-grown barley plants (cv. Proctor) were exposed to infection by powdery mildew during four stages of development, G.S. 2–6, G.S. 7–9, G.S. 10-10-5 and G.S. 11 (Feekes scale, Large, 1954). All combinations were examined (i.e. 2⁴ factorial). The numbers of fertile tillers at harvest were significantly reduced by mildew during periods G.S. 2–6 and G.S. 7–9. Numbers of grains per head and grain size (1000 grain weight) were significantly reduced by mildew only during G.S. 2–6. Effects, on components of yield, of the four mildew treatments were found to be almost entirely additive. The only significant interactions found were for grain size: in this instance there was some interaction between treatments at G.S. 2–6 and G.S. 10-10-5 and between treatments at G.S. 2–6, G.S. 7–9 and G.S. 10-10-5.     

Skeletal growth and aging parameters due to heredity at different stages of ontogeny

Two hundred and twenty twins of Ukrainian ethnic group have been examined (89 monozygotic (MZ) and 131 dizygotic (DZ) pairs) during peripubertal (42 MZ and 69 DZ) and mature (47 MZ and 69 DZ) age periods. Of them: 94 are male pairs (31 MZ and 62 DZ) and 126 female (58 MZ and 68 DZ) pairs. The program including 16 anthropometric, 48 osteometric and 8 osteoscopic signs has been performed according to the recommendations suggested by D. G. Rokhlin (1936), V. V. Bunak (1941) and B. A. Nikityuk (1968). The hereditary influence on the longitudinal anthropometric signs decreases in mature age with a simultaneous increase of these influences on weight parameters and transversal dimensions of the trunk. Transition from the peripubertal to the mature age is characterised by a decrease of genetic effects on highly-hereditable osteometric signs and an increasing effect of heredity on the skeletal ageing signs. The degree of hereditarily-dependent skeletal ageing is higher in the I mature than in the II mature age, and in the female it is higher than in the male group.