Distribution of Members of the Crypthecodinium cohnii (Dinophyceae) Species Complex1

Crypthecodinium cohnii, a small marine heterotrophic homothallic dinoflagellate, has diversified into a complex of morphologically very similar breeding groups (biological species or sibling species), some of which have become widely dispersed. Membership of two clones in the same sibling species is shown by their sexual compatibility as determined by genetic complementation in zygotes formed from motility mutants derived from the two stocks. Membership in different sibling species may be inferrec when motility mutants of one strain do not complement those of another. Fifty-six clones representing seaweed enrichments from *** geographic sites have been found to belong to 28 sibling species; 35 clones are members of seven wide-ranging biological species, and 21 are single representatives of 21 other breeding groups within the ranges of the others. Of 174 clonal isolates in our possession, 168 conform in size and shape to C. cohnii. Six others which have smaller cells and only one-fifth the standard DNA and chromosome number belong, we believe, to another species. The C. cohnii complex provides a unique opportunity for the study of evolutionary divergence and geographical dispersion of a dinoflagellate.     

Electrophoretic Characterization of Members of the Crypthecodinium cohnii (Dinophyceae) Species Complex1

Eighty-seven axenic clones of the colorless inshore dinoflagellate Crypthecodinium cohnii were found by mating experiments to fall into 52 sibling species, seven wide ranging (two possibly global)—called major sibling species—and 45 found only once—minor sibling species. Electrophoretic analysis of three soluble enzymes from these strains revealed the following: 1) Despite some polymorphism most members of major sibling species closely resemble one another electrophoretically. 2) Major sibling species and most minor ones are electrophoretically distinct. 3) Sharing of electromorphs is sufficiently extensive, however, that no major sibling species is totally unrelated to all others. 4) Some minor sibling species are electrophoretically indistinguishable from a member of a major sibling species or from one another, suggesting recent origin by sexual isolation in situ. 5) Other minor sibling species differ from majors by one, two, or all three of the enzymes studied. A “model” of sexual isolation and diversification is offered.     

Description of a new species from Laguna Chichancanab,Yucatan, Mexico: <Emphasis Type="Italic">Cyprinodon suavium</Emphasis> (Pisces: Cyprinodontidae)

Cyprinodon suavium is a new species that belongs to the endemic species flock from Laguna Chichancanab, Yucatan, Mexico, which is proposed to have evolved by sympatric speciation in the lake during the last 8000years. C. suaviumis distinguished from all other known Cyprinodon species by a flattened and concave inter- and postorbital skull roof and a terminal mouth with distinctive thickened lips. The short gut length and dietary items found in the gut indicate that C. suavium is one of the carnivorous members of the flock.     

Population structure of the Monocelis lineata (Proseriata, Monocelididae) species complex assessed by phylogenetic analysis of the mitochondrial Cytochrome c Oxidase subunit I (COI) gene

Monocelis lineata consists of a complex of sibling species, widespread in the Mediterranean and Atlantic Ocean. Previous genetic analysis placed in evidence at least four sibling species. Nevertheless, this research was not conclusive enough to fully resolve the complex or to infer the phylogeny/phylogeography of the group. We designed specific primers aiming at obtaining partial sequences of the mtDNA gene Cytochrome c Oxidase subunit I (COI) of M. lineata, and have identified 25 different haplotypes in 32 analyzed individuals. The dendrogram generated by Neighbor-Joining analysis confirmed the differentiation between Atlantic and Mediterranean siblings, as well as the occurrence of at least two Mediterranean sibling species. Thus validated, the method here presented appears as a valuable tool in population genetics and biodiversity surveys on the Monocelis lineata complex.     

Paraphyly of Veronica (Veroniceae; Scrophulariaceae): Evidence from the Internal Transcribed Spacer (ITS) Sequences of Nuclear Ribosomal DNA

Veronica (Veroniceae; Scrophulariaceae) and segregated genera, such as Hebe from New Zealand has been debated intensively in the past. We conducted an analysis of sequence data from the internal transcribed spacer region of nuclear ribosomal DNA (ITS) to evaluate the validity of segregate genera and the monophyly of Veronica. According to the results presented here, Veronica is paraphyletic, with the Hebe complex, Synthyris, and Paederota nested within the larger Veronica clade. Pseudolysimachion is in a basal polytomy of the expanded Veronica clade in the strict consensus tree and might be nested within Veronica as well. Clades within Veronica do not correspond to sections traditionally recognized. This study provides a first estimation of the phylogeny of Veroniceae using molecular data and can serve as a starting point for future investigations of Veronica and relatives. Received 24 July 2000/ Accepted in revised form 19 October 2000     

Some Problems of Studies of the Genetic Bases of Speciation on the Example of <Emphasis Type="Italic">Drosophila</Emphasis> Group <Emphasis Type="Italic">virilis</Emphasis>

Possible ways of studying the genetic bases of speciation have been shown on the example of published data and authors' results. The data were used, which were obtained on different Drosophila species. Possible application of mapping by localization of the gene of quantitative traits and genetic transformation for solution of the problems of speciation is discussed.     

Morphological Stasis of Two Species Belonging to the L-morphotype in the <Emphasis Type="Italic">Brachionus plicatilis</Emphasis> Species Complex

Detection and characterization of sibling species complexes in zooplankton are critical to understanding their ecological responses and patterns of evolution. The taxon Brachionus plicatilis is a complex of at least 14 species with three major, deeply diverged clades, which are morphologically distinct. We studied morphometric differences between two species – B. plicatilis sensu stricto and B. ‘Manjavacas’– which belong to the L-(large) morphotype and often co-occur in ponds or lakes. B. plicatilis s.s. was on average 6% longer than B. ‘Manjavacas’. They differed significantly in the measurements related to lorica spines. A significant discriminant function relating spine measurements was found, however, individuals from each species showed extensive overlap. Our morphometric data provide additional evidence for the species status of B. plicatilis s.s. and B. ‘Manjavacas’. Since these are ancient species, our results support that a morphological stasis occurs in these taxa. We identified COI restriction sites for PvuII and KpnI which are diagnostic for B. ‘Manjavacas’ and B. plicatilis s.s., respectively. We conclude that morphometry is not useful in classifying the two species. At present, this can only be done reliably using molecular methods.     

Molecular Phylogeny of the Ocelloid-Bearing Dinoflagellates Erythropsidinium and Warnowia (Warnowiaceae, Dinophyceae)

ABSTRACT. Members of the family Warnowiaceae are unarmored phagotrophic dinoflagellates that possess an ocelloid. The genus Erythropsidinium (= Erythropsis ) has also developed a unique dynamic appendage, the piston, which is able to independently retract and extend for at least 2 min after the cell lyses. We provide the first small subunit ribosomal RNA gene sequences of warnowiid dinoflagellates, those of the type Erythropsidinium agile and one species of Warnowia . Phylogenetic analyses show that warnowiid dinoflagellates branch within the Gymnodinium sensu stricto group, forming a cluster separated from the Polykrikos clade and with autotrophic Pheopolykrikos beauchampii as closest relative. This reinforces their classification as unarmored dinoflagellates based on the shape of the apical groove, despite the strong ecological and ultrastructural diversity of the Gymnodinium s.s. group. Other structures, such as the ocelloid and piston, have no systematic value above the genus level.     

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes

Amino acid sequence alignments of orthologous ribosomal proteins found in Bacteria, Archaea, and Eukaryota display, relative to one another, an unusual segment or block structure, with major evolutionary implications. Within each of the prokaryotic phylodomains the sequences exhibit substantial similarity, but cross-domain alignments break up into (a) universal blocks (conserved in both phylodomains), (b) bacterial blocks (unalignable with any archaeal counterparts), and (c) archaeal blocks (unalignable with any bacterial counterparts). Sequences of those eukaryotic cytoplasmic riboproteins that have orthologs in both Bacteria and Archaea, exclusively match the archaeal block structure. The distinct blocks do not correlate consistently with any identifiable functional or structural feature including RNA and protein contacts. This phylodomain-specific block pattern also exists in a number of other proteins associated with protein synthesis, but not among enzymes of intermediary metabolism. While the universal blocks imply that modern Bacteria and Archaea (as defined by their translational machinery) clearly have had a common ancestor, the phylodomain-specific blocks imply that these two groups derive from single, phylodomain-specific types that came into existence at some point long after that common ancestor. The simplest explanation for this pattern would be a major evolutionary bottleneck, or other scenario that drastically limited the progenitors of modern prokaryotic diversity at a time considerably after the evolution of a fully functional translation apparatus. The vast range of habitats and metabolisms that prokaryotes occupy today would thus reflect divergent evolution after such a restricting event. Interestingly, phylogenetic analysis places the origin of eukaryotes at about the same time and shows a closer relationship of the eukaryotic ribosome-associated proteins to crenarchaeal rather than euryarchaeal counterparts.     

Ribosomal RNA genes challenge the monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida)

To date only five partial and two complete SSU rRNA gene sequences are available for the lobose testate amoebae (Arcellinida). Consequently, the phylogenetic relationships among taxa and the definition of species are still largely dependant on morphological characters of uncertain value, which causes confusion in the phylogeny, taxonomy and the debate on cosmopolitanism of free-living protists. Here we present a SSU rRNA-based phylogeny of the Hyalospheniidae including the most common species. Similar to the filose testate amoebae of the order Euglyphida the most basal clades have a terminal aperture; the ventral position of the pseudostome appears to be a derived character. Family Hyalospheniidae appears paraphyletic and is separated into three clades: (1) Heleopera sphagni, (2) Heleopera rosea and Argynnia dentistoma and (3) the rest of the species from genera Apodera, Hyalosphenia, Porosia and Nebela. Our data support the validity of morphological characters used to define species among the Hyalospheniidae and even suggest that taxa described as varieties may deserve the rank of species (e.g. N. penardiana var. minor). Finally our results suggest that the genera Hyalosphenia and Nebela are paraphyletic, and that Porosia bigibbosa branches inside the main Nebela clade.     

利用核核糖体DNA内转录间隔区(ITS)探讨广义羽藓科系统发育

利用核核糖体DNA ITS序列,探讨了苔藓植物广义羽藓科的系统发育,摸索出适于扩增ITS片段的最适反应条件。实验共得到广义羽藓科6个种的ITS序列,它们分别是：Abieti-nela abietina(AJ417494),Anomodon minar(AJ344145),Chaopodium aciculum(AJ315968),Tuidium pristocalyx(AJ416443),Thuidium assimile(AJ416442),Herpetineuron toccoae(AJ315967),其中后5个种是国际上首次得到的。本文利用ITS序列构建羽藓科7属、11种植物的系统发育树,据Bootstrap严格一致树表明：广义的羽藓科为并系发育,可分为两个主要的分支,牛舌藓属Anomodon,羊角藓属Herpetineuron和多枝藓属Happohymenium等为一支,而山羽藓属Abietinella,羽藓属Thuuidium,沼羽藓属Helodium和麻羽藓属Claopodium等为另一主要分支,从分子水平上支持了据形态特征把原牛舌藓亚科的牛舌藓属,羊角藓属,多枝藓属提升为牛舌藓科的结论。     

Taxonomy, morphology and speciation of the Semicytherura henryhowei group (Crustacea, Ostracoda)

The genus Semicytherura belongs to the family Cytheruridae, and was distinguished from Cytherura on the basis of carapace features. Species of Semicytherura from Japan and adjacent seas can be divided into two groups. One is represented by Semicytherura miurensis Hanai, 1957, characterized by a thin, oval carapace covered with fine reticulation. The other is represented by Semicytherura henryhowei Hanai & Ikeya, 1977, characterized by a thick sub-rectangular carapace in lateral view. Semicytherura henryhowei, which is distributed from Hokkaido to Okinawa in Japan, has been regarded as having several morphotypes distinguishable on outline and reticulation of carapace. However, as a result of detailed observations on the copulatory organ, carapace outline and distributional pattern of pore systems, remarkable differences are shown to exist between the two most frequently occurring morphotypes. In order to recognize S. henryhowei sensu stricto, the carapace of the holotype was re-examined. Consequently, neither of the two morphotypes are considered to belong to S. henryhowei due to differences of carapace outline and distribution of pore systems. The two morphotypes are here regarded as independent taxa, described as new: S. kazahanan. sp. and S. sasameyukin. sp. The geographical distributions of the two new species overlap, but their micro-habitats differ from each other; the former lives on calcareous algae on rocky shores, the latter lives on silty sand bottom within the inner bay. A third new species, S. slipperi sp. nov., is also described. In view of their present geographical distributions and fossil records, the origin of this group of species would appear to be the Japanese islands or adjacent areas in and after the Miocene. This group then migrated to the Arctic Ocean and East Pacific Ocean during or before the middle Pliocene.     

Genetic heterogeneity, reproductive isolation and host preferences in mealy aphids of the Hyalopterus pruni complex (Homoptera, Aphidoidea)

Three taxa were detected by allozyme markers within the mealy aphids of the Hyalopterus pruni complex, having different cultivated Prunus species as main primary hosts. The genetically closer H. pruni and H. amygdali A ( D _Nei= 0.10) never share primary hosts, whereas H. amygdali A and B ( D _Nei= 0.32) may occasionally share them, producing few F₁ hybrids. The three species proved reproductively isolated in the field, with no gene exchange. Their speciation seem to have occurred long before the agricultural revolution, crop colonization representing a host range expansion rather than a host shift, as in sympatric speciation.     

Examination of the Montastraea annularis Species Complex (Cnidaria: Scleractinia) Using ITS and COI Sequences

The Caribbean coral Montastraea annularis has recently been proposed to be a complex of at least three sibling species. To test the validity of this proposal, we sequenced the ITS region of the nuclear ribosomal RNA gene family (ITS-1, 5.8S, and ITS-2), and a portion of the mitochondrial DNA gene cytochrome c oxidase subunit I (COI) from the three proposed species (M. annularis, M. faveolata, and M. franksi) from Florida reefs. The ITS fragment was 665 nucleotides long and had 19 variable sites, of which 6 were parsimony-informative sites. None of these sites was fixed within the proposed species. The COI fragment was 658 nucleotides long with only two sites variable in one individual. Thus, under both the biological species concept and the phylogenetic species concept, the molecular evidence gathered in this study indicates the Montastraea annularis species complex to be a single evolutionary entity as opposed to three distinct species. The three proposed Montastraea species can interbreed, ruling out prezygotic barriers to gene flow (biological species concept), and the criterion of monophyly is not satisfied if hybridization is occurring among taxa (phylogenetic species concept). Received January 20, 1998; accepted September 30, 1998.     

基于线粒体Cytb基因序列探讨中国斑翅蝗科部分种类的系统发育关系

基于斑翅蝗科14种的线粒体Cytb基因462 bp序列,使用MEGA2和PAUP4.0b软件包进行分析,显示Cytb基因序列具有明显的高A、T偏向性和距离依赖的TS/TV值.采用邻接法(NJ)、最大似然法(MP)和极似然法(ML)分别构建斑翅蝗科4亚科8属的系统发育树,不同算法构建的系统发育树均支持分为四大分支(亚科):A(绿纹蝗属)、B(束颈蝗属)、C((飞蝗属+车蝗属)+小车蝗属)、D((痂蝗属+异痂蝗属)+皱膝蝗属);红胫小车蝗和黄胫小车蝗作为两个种比较合适;痂蝗亚科和异痂蝗亚科应该合并为一个亚科;飞蝗亚科与斑翅蝗亚科的分类关系尚未解决,需要进一步的研究进行分析验证.     

Structural and Sequence Evolution of U17 Small Nucleolar RNA (snoRNA) and Its Phylogenetic Congruence in Chelonians

Vertebrate U17 RNA is an intron-encoded H/CA box containing snoRNA, which has been intensively studied in the last decade, though its precise role in ribosome biogenesis is not yet clear. A consensus secondary structure for the U17 RNA molecule has been derived from the comparative sequence and structural evolution analysis of U17 snoRNA among vertebrates. Its phylogenetic congruence above class level has been tested and preliminary data on chelonians suggest that also in this order, U17 snoRNA evolved congruently with phylogeny. We herein extend our analysis to other components of this reptile group. According to the sequence data that have also emerged from chelonians, the U17 RNA molecule can be divided into two main domains: the 5-variable domain, which presents the sequence motifs capable of base-pairing with the 18S rRNA target and spanning STEM1, -2, and -3, and the 3-conserved domain, consisting of STEM4. In vertebrates, the latter RNA region shows a high conservation both in secondary structure and in the presence of the three sequence motifs 5-AUUCCUA-3, 5-U(G/U)ACU-3, and 5-AACCC-3. We tested the phylogenetic congruence of U17 evolution with chelonian relationships: Our results are significantly similar to those emerging from mtDNA and morphological systematics. Some discrepancies (e.g., the position of Platysternon) need to be addressed in greater depth.     

Mating behaviour of the ‘cosmopolitan’ species Phyllognathopus viguieri (Copepoda: Harpacticoida) and its systematical significance

The mating behaviour was studied and recorded on video with individuals of four cultures of Phyllognathopus viguieri from different populations obtained from the interstitial water of a slow sand filter near the river Ruhr (Germany) (Ruhr population), from a compost heap in Bethesda (Maryland, USA) (Maryland population), from a rain gauge in Windsor Campbell farm (Jamaica) (Jamaica population), and a tree trunk with moss in a forest in the municipality of Rio de Janeiro (Brazil) (Brazil population). The mating behaviour was divided into the well‐known initial phase, copula phase and postcopulatory mate guarding phase. An additional phase prior to the initial phase serves to recognize the female, the recognition phase. The mating behaviour is identical in the males of the Jamaica and Brazil populations of P. viguieri. A postcopulatory mate guarding phase is not found in these two groups. Here, we refute the hypothesis, that a postcopulatory mate guarding phase is found in taxa in which only adult males grasp adult females. The males of the Ruhr and Maryland populations differ from each other in their mating behaviour. Generally, the males of all four populations do not mate with fertilized females which are equally unattractive to the males, i.e., females mate only once in their lifetime to produce offspring. These results corroborate the view that the different populations of P. viguieri do not belong to a single cosmopolitan species.     

Molecular taxonomy: description of a cryptic Petitia species (Polychaeta: Syllidae) from the island of Mah&eacute; (Seychelles, Indian Ocean) using RAPD markers and ITS2 sequences

Petitia occulta sp. n. provides an example demonstrating that a morphologically indistinguishable species taxon can be described by molecular markers alone. Phenotypically the polychaete belongs to Petitia amphophthalma Siewing, 1956, one of the numerous meiofaunal species that have previously been regarded as cosmopolitan. Genotypically, however, by means of randomly amplified polymorphic DNA (RAPD)–polymerase chain reaction (PCR) (a DNA-fingerprinting technique) the population on the Indo-Pacific island of Mahé can be identified as a distinct taxonomic entity as: (1) genetic distance values between the Petitia from the Seychelles and from other sites (Mediterranean, Canary Islands) are relatively great; (2) differently generated cluster analyses of genetic distances produce phenograms revealing a distinctly separate clade (bootstrap 100%) for the Seychelles animals; and (3) the Seychelles animals are characterized by eight monomorphic diagnostic (i.e. autapomorphic) DNA-fragments. The RAPD procedure in this case requires the preparation of the whole organisms and, thus, no holotype is available. Instead the RAPD band-pattern with the diagnostic markers of one individual obtained with six primers, isolated DNA of one individual, and syntypes in the form of fixed, complete individuals are deposited. Species differentiation is confirmed by genomic DNA sequencing (ITS2).