Distribution of Members of the Crypthecodinium cohnii (Dinophyceae) Species Complex1

Crypthecodinium cohnii, a small marine heterotrophic homothallic dinoflagellate, has diversified into a complex of morphologically very similar breeding groups (biological species or sibling species), some of which have become widely dispersed. Membership of two clones in the same sibling species is shown by their sexual compatibility as determined by genetic complementation in zygotes formed from motility mutants derived from the two stocks. Membership in different sibling species may be inferrec when motility mutants of one strain do not complement those of another. Fifty-six clones representing seaweed enrichments from *** geographic sites have been found to belong to 28 sibling species; 35 clones are members of seven wide-ranging biological species, and 21 are single representatives of 21 other breeding groups within the ranges of the others. Of 174 clonal isolates in our possession, 168 conform in size and shape to C. cohnii. Six others which have smaller cells and only one-fifth the standard DNA and chromosome number belong, we believe, to another species. The C. cohnii complex provides a unique opportunity for the study of evolutionary divergence and geographical dispersion of a dinoflagellate.     

Electrophoretic Characterization of Members of the Crypthecodinium cohnii (Dinophyceae) Species Complex1

Eighty-seven axenic clones of the colorless inshore dinoflagellate Crypthecodinium cohnii were found by mating experiments to fall into 52 sibling species, seven wide ranging (two possibly global)—called major sibling species—and 45 found only once—minor sibling species. Electrophoretic analysis of three soluble enzymes from these strains revealed the following: 1) Despite some polymorphism most members of major sibling species closely resemble one another electrophoretically. 2) Major sibling species and most minor ones are electrophoretically distinct. 3) Sharing of electromorphs is sufficiently extensive, however, that no major sibling species is totally unrelated to all others. 4) Some minor sibling species are electrophoretically indistinguishable from a member of a major sibling species or from one another, suggesting recent origin by sexual isolation in situ. 5) Other minor sibling species differ from majors by one, two, or all three of the enzymes studied. A “model” of sexual isolation and diversification is offered.     

Description of a new species from Laguna Chichancanab,Yucatan, Mexico: <Emphasis Type="Italic">Cyprinodon suavium</Emphasis> (Pisces: Cyprinodontidae)

Cyprinodon suavium is a new species that belongs to the endemic species flock from Laguna Chichancanab, Yucatan, Mexico, which is proposed to have evolved by sympatric speciation in the lake during the last 8000years. C. suaviumis distinguished from all other known Cyprinodon species by a flattened and concave inter- and postorbital skull roof and a terminal mouth with distinctive thickened lips. The short gut length and dietary items found in the gut indicate that C. suavium is one of the carnivorous members of the flock.     

Population structure of the Monocelis lineata (Proseriata, Monocelididae) species complex assessed by phylogenetic analysis of the mitochondrial Cytochrome c Oxidase subunit I (COI) gene

Monocelis lineata consists of a complex of sibling species, widespread in the Mediterranean and Atlantic Ocean. Previous genetic analysis placed in evidence at least four sibling species. Nevertheless, this research was not conclusive enough to fully resolve the complex or to infer the phylogeny/phylogeography of the group. We designed specific primers aiming at obtaining partial sequences of the mtDNA gene Cytochrome c Oxidase subunit I (COI) of M. lineata, and have identified 25 different haplotypes in 32 analyzed individuals. The dendrogram generated by Neighbor-Joining analysis confirmed the differentiation between Atlantic and Mediterranean siblings, as well as the occurrence of at least two Mediterranean sibling species. Thus validated, the method here presented appears as a valuable tool in population genetics and biodiversity surveys on the Monocelis lineata complex.     

Some Problems of Studies of the Genetic Bases of Speciation on the Example of <Emphasis Type="Italic">Drosophila</Emphasis> Group <Emphasis Type="Italic">virilis</Emphasis>

Possible ways of studying the genetic bases of speciation have been shown on the example of published data and authors' results. The data were used, which were obtained on different Drosophila species. Possible application of mapping by localization of the gene of quantitative traits and genetic transformation for solution of the problems of speciation is discussed.     

Paraphyly of Veronica (Veroniceae; Scrophulariaceae): Evidence from the Internal Transcribed Spacer (ITS) Sequences of Nuclear Ribosomal DNA

Veronica (Veroniceae; Scrophulariaceae) and segregated genera, such as Hebe from New Zealand has been debated intensively in the past. We conducted an analysis of sequence data from the internal transcribed spacer region of nuclear ribosomal DNA (ITS) to evaluate the validity of segregate genera and the monophyly of Veronica. According to the results presented here, Veronica is paraphyletic, with the Hebe complex, Synthyris, and Paederota nested within the larger Veronica clade. Pseudolysimachion is in a basal polytomy of the expanded Veronica clade in the strict consensus tree and might be nested within Veronica as well. Clades within Veronica do not correspond to sections traditionally recognized. This study provides a first estimation of the phylogeny of Veroniceae using molecular data and can serve as a starting point for future investigations of Veronica and relatives. Received 24 July 2000/ Accepted in revised form 19 October 2000     

Cryptic diversity of small‐sized species of Phalacroma (Dinophysales,Dinophyceae) from Denmark Strait (Eastern Arctic Greenland)

Phalacroma currently comprises 69 species of mostly marine heterotrophic dinophysoids. With a round cell body and short sulcal and cingular lists, Phalacroma spp. have a simple morphology compared to other dinophysoid genera. Therefore, species identification is not always a trivial matter. A few Arctic species have been described and, with the exception of Ph. rotundatum, they are not only infrequently recorded but also occur in low cell abundances. Here, we studied a Lugol fixed sample from Denmark Strait. From this sample 13 cells with a Phalacroma‐like morphology were isolated under a stereo microscope, photo documented, and used for single‐cell PCR determination of nuclear‐encoded LSU rDNA sequences. The sequences fell in three groups defined by their ribotype. A single ribotype sequence representing each group was added to an alignment containing a diverse assemblage of dinophysoids and analyzed using Bayesian analysis and maximum likelihood. Based on comparative light microscopy one of the ribotypes (ribotype 1) was similar but not identical to Ph. ruudi and ribotype 2 could not be matched to a known species of Phalacroma. In the phylogeny both clustered with other species of Phalacroma including the type species. The morphology of ribotype 3 was similar but not identical to Ph. braarudii. In the phylogeny ribotype 3 clustered outside the core group of Phalacroma species. Hence, ribotype 3 was designated ‘Phalacroma’ sp. 3 and has to be described as a new genus pending additional data. This study has revealed the existence of cryptic species diversity within the Phalacroma morphotype boundary. Two additional Phalacroma species (Ph. apicatum and Ph. cf. argus) also clustered outside Phalacroma sensu stricto further emphasizing the presence of cryptic species within the genus. Future studies with a polyphasic approach are needed to better address the taxonomy of Phalacroma and Phalacroma‐like dinophysoids.     

Morphological Stasis of Two Species Belonging to the L-morphotype in the <Emphasis Type="Italic">Brachionus plicatilis</Emphasis> Species Complex

Detection and characterization of sibling species complexes in zooplankton are critical to understanding their ecological responses and patterns of evolution. The taxon Brachionus plicatilis is a complex of at least 14 species with three major, deeply diverged clades, which are morphologically distinct. We studied morphometric differences between two species – B. plicatilis sensu stricto and B. ‘Manjavacas’– which belong to the L-(large) morphotype and often co-occur in ponds or lakes. B. plicatilis s.s. was on average 6% longer than B. ‘Manjavacas’. They differed significantly in the measurements related to lorica spines. A significant discriminant function relating spine measurements was found, however, individuals from each species showed extensive overlap. Our morphometric data provide additional evidence for the species status of B. plicatilis s.s. and B. ‘Manjavacas’. Since these are ancient species, our results support that a morphological stasis occurs in these taxa. We identified COI restriction sites for PvuII and KpnI which are diagnostic for B. ‘Manjavacas’ and B. plicatilis s.s., respectively. We conclude that morphometry is not useful in classifying the two species. At present, this can only be done reliably using molecular methods.     

Adaptive radiation of barbs of the genus Labeobarbus (Cyprinidae) in an East African river

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Species boundaries and global biogeography of the Alexandrium tamarense complex (Dinophyceae)1

Alexandrium catenella (Whedon et Kof.) Balech, A. tamarense (M. Lebour) Balech, and A. fundyense Balech comprise the A. tamarense complex, dinoflagellates responsible for paralytic shellfish poisoning worldwide. The relationships among these morphologically defined species are poorly understood, as are the reasons for increases in range and bloom occurrence observed over several decades. This study combines existing data with new ribosomal DNA sequences from strains originating from the six temperate continents to reconstruct the biogeography of the complex and explore the origins of new populations. The morphospecies are examined under the criteria of phylogenetic, biological, and morphological species concepts and do not to satisfy the requirements of any definition. It is recommended that use of the morphospecies appellations within this complex be discontinued as they imply erroneous relationships among morphological variants. Instead, five groups (probably cryptic species) are identified within the complex that are supported on the basis of large genetic distances, 100% bootstrap values, toxicity, and mating compatibility. Every isolate of three of the groups that has been tested is nontoxic, whereas every isolate of the remaining two groups is toxic. These phylogenetic groups were previously identified within the A. tamarense complex and given geographic designations that reflected the origins of known isolates. For at least two groups, the geographically based names are not indicative of the range occupied by members of each group. Therefore, we recommend a simple group‐numbering scheme for use until the taxonomy of this group is reevaluated and new species are proposed.     

Molecular Phylogeny of the Ocelloid-Bearing Dinoflagellates Erythropsidinium and Warnowia (Warnowiaceae, Dinophyceae)

ABSTRACT. Members of the family Warnowiaceae are unarmored phagotrophic dinoflagellates that possess an ocelloid. The genus Erythropsidinium (= Erythropsis ) has also developed a unique dynamic appendage, the piston, which is able to independently retract and extend for at least 2 min after the cell lyses. We provide the first small subunit ribosomal RNA gene sequences of warnowiid dinoflagellates, those of the type Erythropsidinium agile and one species of Warnowia . Phylogenetic analyses show that warnowiid dinoflagellates branch within the Gymnodinium sensu stricto group, forming a cluster separated from the Polykrikos clade and with autotrophic Pheopolykrikos beauchampii as closest relative. This reinforces their classification as unarmored dinoflagellates based on the shape of the apical groove, despite the strong ecological and ultrastructural diversity of the Gymnodinium s.s. group. Other structures, such as the ocelloid and piston, have no systematic value above the genus level.     

Systematics of the Miocene–Recent bryozoan genus Pentapora (Cheilostomata)

The four existing species of the ascophoran bryozoan Pentapora Fisher, 1807 are revised, and two new fossil species are introduced: Pentapora lacryma sp. nov. from the Pliocene Coralline Crag Formation of Suffolk, and Pentapora clipeus sp. nov. from the Pliocene of Emilia, Italy. The Arctic species Pentapora boreale Kuklinski & Hayward possesses a lyrula, does not belong in Pentapora, and is a junior synonym of Raymondcia rigida (Lorenz). The morphology of the autozooids is relatively uniform within the genus, and the main distinguishing characters are those of the ovicells and, particularly, the giant avicularia that are developed sporadically in all species apart from Pentapora foliacea, popularly known as ‘Ross coral’. A phylogenetic analysis based on skeletal characters returned a single shortest tree in which the three species of Pentapora from the North Atlantic (P. foliacea, Pentapora pertusa, and P. lacryma sp. nov. ) form a clade crownward of the three basal species from the Mediterranean (Pentapora ottomulleriana, Pentapora fascialis, and P. clipeus sp. nov. ). © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 17–39.     

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes

Amino acid sequence alignments of orthologous ribosomal proteins found in Bacteria, Archaea, and Eukaryota display, relative to one another, an unusual segment or block structure, with major evolutionary implications. Within each of the prokaryotic phylodomains the sequences exhibit substantial similarity, but cross-domain alignments break up into (a) universal blocks (conserved in both phylodomains), (b) bacterial blocks (unalignable with any archaeal counterparts), and (c) archaeal blocks (unalignable with any bacterial counterparts). Sequences of those eukaryotic cytoplasmic riboproteins that have orthologs in both Bacteria and Archaea, exclusively match the archaeal block structure. The distinct blocks do not correlate consistently with any identifiable functional or structural feature including RNA and protein contacts. This phylodomain-specific block pattern also exists in a number of other proteins associated with protein synthesis, but not among enzymes of intermediary metabolism. While the universal blocks imply that modern Bacteria and Archaea (as defined by their translational machinery) clearly have had a common ancestor, the phylodomain-specific blocks imply that these two groups derive from single, phylodomain-specific types that came into existence at some point long after that common ancestor. The simplest explanation for this pattern would be a major evolutionary bottleneck, or other scenario that drastically limited the progenitors of modern prokaryotic diversity at a time considerably after the evolution of a fully functional translation apparatus. The vast range of habitats and metabolisms that prokaryotes occupy today would thus reflect divergent evolution after such a restricting event. Interestingly, phylogenetic analysis places the origin of eukaryotes at about the same time and shows a closer relationship of the eukaryotic ribosome-associated proteins to crenarchaeal rather than euryarchaeal counterparts.     

Ribosomal RNA genes challenge the monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida)

To date only five partial and two complete SSU rRNA gene sequences are available for the lobose testate amoebae (Arcellinida). Consequently, the phylogenetic relationships among taxa and the definition of species are still largely dependant on morphological characters of uncertain value, which causes confusion in the phylogeny, taxonomy and the debate on cosmopolitanism of free-living protists. Here we present a SSU rRNA-based phylogeny of the Hyalospheniidae including the most common species. Similar to the filose testate amoebae of the order Euglyphida the most basal clades have a terminal aperture; the ventral position of the pseudostome appears to be a derived character. Family Hyalospheniidae appears paraphyletic and is separated into three clades: (1) Heleopera sphagni, (2) Heleopera rosea and Argynnia dentistoma and (3) the rest of the species from genera Apodera, Hyalosphenia, Porosia and Nebela. Our data support the validity of morphological characters used to define species among the Hyalospheniidae and even suggest that taxa described as varieties may deserve the rank of species (e.g. N. penardiana var. minor). Finally our results suggest that the genera Hyalosphenia and Nebela are paraphyletic, and that Porosia bigibbosa branches inside the main Nebela clade.     

An integrative approach to the taxonomy of the pigmented European Pseudomonocelis Meixner, 1943 (Platyhelminthes: Proseriata)

Only a few species belonging to the Proseriata (Platyhelminthes) show a parenchymatic pigmentation, which may aid identification. Among these, Pseudomonocelis agilis has a yellowish body and is provided with a reddish–brown girdle in front of the statocyst. The species is known for limited areas of northern Europe and the Mediterranean. The present study was conducted to assess both the taxonomic status of populations attributed to the species across the unusually wide range for an interstitial flatworm, which lacks an obvious means of dispersal, and the levels of genetic variability within and among populations, by employing an integrative approach that included the analyses, on six populations, of three molecular markers (small subunit ribosomal 18S‐like gene, inter‐simple sequence repeat, allozymes), karyotypes, and 11 morphological characters. Furthermore, crossbreeding experiments were carried out on the Mediterranean populations. The results obtained revealed the existence of four highly divergent genotypic clusters, accompanied by karyological differences, with complete intersterility among the clusters tested. The combination of approaches adopted strongly supports the conclusion that the wide‐ranging European pigmented species P. agilis is actually composed of four species: P. agilis in the Baltic area; Pseudomonocelis cetinae in the Adriatic; and Pseudomonocelis sp. nov. A and Pseudomonocelis sp. nov. B in the western and eastern Mediterranean, respectively. The latter two species are morphologically indistinguishable for the parameters essayed. Reconstruction of the phylogenetic relationships of these taxa, including congeneric and consubfamilial outgroups, showed that pigmentation is a plesiomorphic condition for the genus Pseudomonocelis and that Pseudomonocelis sp. nov. A shares a previously undetected, sister‐group relationship with species of the unpigmented P. ophiocephala complex. The present study thus depicts complex speciation processes in a mesopsammic species, which involves allopatric divergence operating on different scales and ecological shifts, and highlights that the contribution of microturbellarians to marine biodiversity may be seriously underestimated. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 907–922.     

Complex trait differentiation between host-populations of the pea aphid Acyrthosiphon pisum (Harris): implications for the evolution of ecological specialisation

Variation in traits affecting preference for, and performance on, new habitats is a key factor in the initiation of ecological specialisation and adaptive speciation. However, habitat and resource use also involves other traits whose influence on ecological and genetic divergence remains poorly understood. In the present study, we investigated the extent of variation of life-history traits among sympatric populations of the pea aphid Acyrthosiphon pisum , which shows several host races that are specialised on various plants of the family Fabaceae plants and is an established model for ecological speciation. First, we assessed the community structure of microbial partners within host populations of the pea aphid. The effect of these microbes on host fitness is uncertain, although there is growing evidence that they may modulate various important adaptive traits of their host such as plant utilisation and resistance against natural enemies. Second, we performed a multivariate analysis on several ecologically relevant features of host populations recorded in the present and previous studies (including microbial composition, colour morph, reproductive mode, and male dispersal phenotype), enabling the identification of correlations between phenotypic traits. We discuss the ecological significance of these associations of traits in relation to the habitat characteristics of pea aphid populations, and their consequences for the evolution of ecological specialisation and sympatric speciation.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 718–727.     

利用核核糖体DNA内转录间隔区(ITS)探讨广义羽藓科系统发育

利用核核糖体DNA ITS序列,探讨了苔藓植物广义羽藓科的系统发育,摸索出适于扩增ITS片段的最适反应条件。实验共得到广义羽藓科6个种的ITS序列,它们分别是：Abieti-nela abietina(AJ417494),Anomodon minar(AJ344145),Chaopodium aciculum(AJ315968),Tuidium pristocalyx(AJ416443),Thuidium assimile(AJ416442),Herpetineuron toccoae(AJ315967),其中后5个种是国际上首次得到的。本文利用ITS序列构建羽藓科7属、11种植物的系统发育树,据Bootstrap严格一致树表明：广义的羽藓科为并系发育,可分为两个主要的分支,牛舌藓属Anomodon,羊角藓属Herpetineuron和多枝藓属Happohymenium等为一支,而山羽藓属Abietinella,羽藓属Thuuidium,沼羽藓属Helodium和麻羽藓属Claopodium等为另一主要分支,从分子水平上支持了据形态特征把原牛舌藓亚科的牛舌藓属,羊角藓属,多枝藓属提升为牛舌藓科的结论。