Polysaccharide monoxygenases: giving a boost to biofuel production

In this issue of Structure, Li et?al. present high resolution crystal structures of two fungal polysaccharide monoxygenases. Unexpectedly, they observe oxygen species bound at the active sites that inform on the chemistry that can be supported by these enzymes. Additionally, the organization of aromatic amino acids and glycosylation on the carbohydrate binding surfaces suggests that regiospecificity and cellulose orientation can be predicted.     

Collection devices for cervicovaginal cytology: a comparison

OBJECTIVE: To compare cervicovaginal smears obtained by a cotton-tipped swab with those obtained by cervix brush and modified Ayre spatula. STUDY DESIGN: A combined cervicovaginal smear was collected from 100 women using 3 different collection devices: cotton-tipped swab, cervix brush, and modified Ayre spatula. In each patient a set of 3 smears was collected by the same cytotechnologist using all 3 devices in random order. Smears were evaluated using parameters mandatory for an optimal smear: evenly dispersed, well-preserved, adequate cells from the transformation zone. The cost and availability of the collection devices were also considered. RESULTS: The swab was the most effective device in obtaining thin, evenly spread, adequate, well-preserved smears as against the cervix brush and Ayre spatula. The pickup of abnormal cells was similar with the cotton-tipped swab and cervix brush, while the Ayre spatula failed to yield high grade squamous intraepithelial lesions, atypical glandular cells of undetermined significance and adenocarcinoma cells. The cotton-tipped swab proved to be the most cost effective. CONCLUSION: A properly prepared cotton-tipped swab is an inexpensive, readily available, nontraumatic collection device that yields smear of optimal quality.     

Modeling the effect of mixing in biodiesel production

The transesterification reaction models available in the literature are valid only for one particular mixing condition. In this work, a modeling strategy is presented in order to predict the effect of mixing conditions in the transesterification process. The proposed methodology was applied to independent sets of experimental data available in the literature that show the dependency of the transesterification reaction on the frequency of rotation of the stirrer. The accuracy of the developed models corroborates the validity of the proposed modeling approach.     

Polysaccharide production by Aureobasidium pullulans: factors affecting polysaccharide formation

Aureobasidium pullulans NRRL 6220 synthesized polysaccharide most actively in media containing sucrose, fructose or maltose with (NH₄)₂SO₄ (0.6 g/l) or ammonium acetate giving greatest yields of the polysaccharide. With (NH₄)₂SO₄ at 1.2 g/l, production of polysaccharide was decreased considerably. Polysaccharide production was highest with an initial pH of 6.5 while biomass formation was better below an initial pH of 5.5. Optimum phosphate concentration for polysaccharide production was 0.03 m.S.M. Badr-Eldin, H.G. El-Masry and O.A. Abd El-Rahman are with the Microbial Chemistry Department, National Research Center, Dokki, Cairo, Egypt; F.H.A. Mohamad is with the Chemical Engineering and Pilot Plant Department, National Research Center, Dokki, Cairo, Egypt. O.M. El-Tayeb is with the Microbiology Department, Faculty of Pharmacy, Cairo University, Egypt.     

The ability of scavengers to distinguish OH. production in the iron-catalyzed Haber-Weiss reaction: comparison of four assays for OH

Kinetic analysis has been used to access how well scavenger inhibition can characterize the reactivity of oxidants produced in the iron-catalyzed reaction of H2O2 with xanthine oxidase-derived O2-.. Formate oxidation to CO2, deoxyribose oxidation, benzoate hydroxylation, and ethylene production from alpha-keto-gamma-methiolbutyric acid (KMB) were measured. With Fe(EDTA) as catalyst, inhibition by most scavengers was quantitatively as expected for OH. involvement. Exceptions were urate and thiourea, which inhibited excessively and appeared to scavenge intermediates of the detection reactions. With nonchelated iron, there was minimal formate oxidation, but benzoate, KMB, and deoxyribose gave, respectively, 17%, 25%, and approximately the same product yield as with Fe(EDTA). Deoxyribose oxidation was not inhibited by some scavengers and excessively inhibited by others. However, scavengers that did not inhibit deoxyribose oxidation did inhibit with KMB and benzoate, and differences in scavenger effects in the presence and absence of EDTA in these assays were relatively minor. The results with formate and deoxyribose, but not KMB and benzoate, can therefore exclude free OH. as a significant oxidant product of the nonchelated iron-catalyzed Haber-Weiss reaction. It is proposed that the different patterns of scavenger inhibition arise in the different assays because scavengers can react with intermediates in the detection reactions, all of which are multistep chains. Thus, inhibition may not signify OH. involvement, and similarities with inhibition expected for OH. my be fortuitous.     

A critical review of experimental and CFD techniques to characterize the mixing performance of anaerobic digesters for biogas production

Reviews in Environmental Science and Bio/Technology - Biogas from anaerobic digestion (AD), as an important alternative to fossil fuels, has contributed to energy recovery and environmental...     

Recreating semi-natural grasslands: A comparison of four methods

Semi-natural grasslands and their species and populations are declining rapidly throughout Europe, bringing about a need for successful vegetation recreation methods. To maintain biodiversity and ecological services of semi-natural grasslands, we need more knowledge on the relative performance of different recreation methods. In a replicated experiment in western Norway, we evaluated two hay transfer methods (hard or light raking of local hay), sowing of local seeds and natural regeneration for recreating semi-natural grassland in a road verge. We compared treated trial plots with their respective donor plots (where hay and seeds were harvested) for three successive years by evaluating vegetation cover, species richness and species transfer rates, and vegetation dynamics analysed by Bray–Curtis compositional dissimilarity (BC) and GNMDS (Global Non-Metric Multidimensional Scaling) ordination. Vegetation cover at the trial site exceeded that of donor sites in three years. Transfer rates of common species were high for seed sowing and both hay transfer procedures. Species composition in trial plots for all three treatments became significantly more similar to donor plots, but was still relatively dissimilar after three years. Natural regeneration showed a different temporal pattern and also had a higher successional rate. The species composition of the other treatments followed the same trajectory toward the donor sites as revealed by GNMDS. We found relatively small differences between the two hay transfer methods and seed sowing. Transfer of local hay therefore appears to be a successful method of establishing local species when recreating semi-natural grasslands, and is generally cheaper than using commercial local seed mixtures.     

Intensive outdoor algal cultures: How mixing enhances the photosynthetic production rate

Experiments were carried out to define the effect of mixing upon primary productivity. The method compares the production of a water column with ¹⁴C-labelled samples (i) along a classic vertical profile and (ii) with a rotating system moving between the surface and the bottom of the pond, which was 0·5 m deep. In all the experiments, photosynthesis was best in the moving flask. The effect of mixing is particularly important at sunrise and sunset hours: the vertical photosynthetic budget may be over 2·5 times that of homogeneous non-turbulent water. These results have clear implications for monitoring intensive outdoor algal cultures.     

The peroxisome: a production in four acts

A cell regulates the number, size, and kind of each organelle it possesses in response to its particular role in an environment or tissue. Yet we still know little about how the molecular signaling networks within each cell perform such regulation. In this issue, Saleem et al. (Saleem, R.A., B. Knoblach, F.D. Mast, J.J. Smith, J. Boyle, C.M. Dobson, R. Long-O'Donnell, R.A. Rachubinski, and J.D. Aitchison. 2008. J. Cell Biol. 181:281-292) show for the first time how groups of kinases and phosphatases are organized to control when and how a cell assembles one kind of organelle, the peroxisome.     

Microbiological challenge of four protective devices for the reconstitution of cytotoxic agents

Aims: To evaluate the susceptibility to microbial contamination that occurs during simulated handling of protective devices for the preparation of cytotoxic drug solutions. Methods and Results: Four devices, i.e. Chemoprotect spike, Clave connector, PhaSeal and Securmix were challenged with low and high inocula of micro‐organisms. The cells, transferred to the connected vials during repeated manipulations of the devices were counted by means of solid‐phase cytometry. Of the four devices, PhaSeal afforded the lowest transfer of micro‐organisms. Secondly, the efficiency of procedures for the disinfection of an artificially contaminated rubber stopper was compared prior to connection of the vial to the PhaSeal device. Spraying or swabbing alone was inadequate, as opposed to a combination of spraying [0·5% or 2·0% (w/v) chlorhexidine in isopropanol] and swabbing [70% (v/v) isopropanol]. Conclusions: Although Phaseal afforded the lowest transfer of micro‐organisms, adequate disinfection of the vial prior to connection remains required. Significance and Impact of the Study: Unlike aspects of operator protection, which are well documented, the microbiological safety of protective devices for the preparation of cytotoxic drugs has not been addressed in the literature. This study estimates the susceptibility to microbial contamination during handling of four commonly used devices.     

Polysaccharide hydrolysis with engineered Escherichia coli for the production of biocommodities

Escherichia coli can ferment a broad range of sugars, including pentoses, hexoses, uronic acids, and polyols. These features make E. coli a suitable microorganism for the development of biocatalysts to be used in the production of biocommodities and biofuels by metabolic engineering. E. coli cannot directly ferment polysaccharides because it does not produce and secrete the necessary saccharolytic enzymes; however, there are many genetic tools that can be used to confer this ability on this prokaryote. The construction of saccharolytic E. coli strains will reduce costs and simplify the production process because the saccharification and fermentation can be conducted in a single reactor with a reduced concentration or absence of additional external saccharolytic enzymes. Recent advances in metabolic engineering, surface display, and excretion of hydrolytic enzymes provide a framework for developing E. coli strains for the so-called consolidated bioprocessing. This review presents the different strategies toward the development of E. coli strains that have the ability to display and secrete saccharolytic enzymes to hydrolyze different sugar-polymeric substrates and reduce the loading of saccharolytic enzymes.     

Polysaccharide production and the possible occurrence of GDP-d-mannose dehydrogenase inAzotobacter vinelandii

During the growth ofAzotobacter vinelandii in batch culture in Burk's 2% glucose medium supplemented with 50mg EDTA per litre, water-insoluble capsular polysaccharide material accumulated in cultures prior to the appearance of water-soluble polysaccharide in the culture medium. On isolation, hydrolysis and chromatography, both these polysaccharides were observed to be composed of carbohydrate monomers having the same chromatographic mobilities as glucose, rhamnose, guluronic acid and mannuronic acid. The activity of GDP-d-mannose dehydrogenase recorded in crude cell-free extracts fromAzotobacter vinelandii, when these polysaccharides were produced, may indicate a close similarity between the biosynthetic pathway of alginate synthesis in marine Phaeophyceae and this soil microorganism.     

Sexual mixing models: a comparison of analogue deterministic and stochastic models.

Models for sexual partner choice are discussed for the case of highly variable sexual activity in the population. It is demonstrated that the variances in the number of infected persons may be extremely large. For the random mixing model, higher order cumulants are also evaluated. On the basis of these results the applicability of deterministic models and models for expectations only are questioned. A general model is proposed for handling nonrandom, or correlated, mixing. The problem of inconsistency is overcome by considering the couples having sex as the natural unit in the model. In the case of s discrete homogeneous groups it is shown that only (s2) parameters defining the interaction between the groups can be chosen freely. Finally, the effect of correlation in partner choice is demonstrated by a bivariate lognormal model for partner choice.     

Polysaccharide production by a reduced pigmentation mutant of the fungus Aureobasidium pullulans

Abstract A reduced pigmentation mutant was isolated from Aureobasidium pullulans ATCC 42023 by chemical mutagenesis and was subsequently characterized. The pigment melanin was present not only in A. pullulans cells but also contaminated the elaborated polysaccharide and thus, was measured in both fractions. Cellular and polysaccharide melanin levels of the mutant strain were at least 11-fold and 18-fold reduced, respectivelu, compared toits parent strain after 7 days of growth at 30°C whether sucrose or glucose served as the carbon source in the culture medium. Polysaccharide and cell dry weight levels of the mutant were very similar to those observed for the parent after growth on sucrose or glucose as the source of carbon over a period of 7 days at 30°C. The pullulan content of the polysaccharide produced by the parent or mutant strain was lower for sucrose-grown cells than for glucose-grown cells. It was also noted that the pullulan content of the polysaccharide elaborated by the mutant strain was slightly higher than that of the polysaccharide produced by the parent strain after growth on either sucrose or glucose.     

Effect of mixing on the washout and steady-state performance of continuous cultures

The effects of mixing on the critical mean holding time for washout and the steady state performance of growth processes in continuous flow reactors are investigated. Macromixing, micromixing, and cell recycle arc considered. The tanks-in-series model composed of N completely mixed flow reactors, the dispersion model, the plug flow model, and a combined model composed of a plug flow reactor and a continuous stirred tank flow reactor connected in series arc used to represent the macro-mixing or residence time distribution. The extreme cases of micromixing, namely, complete segregation and maximum mixedness, as well as intermediate states of micromixing are investigated to determine their effects on washout and the occurence of multiple steady states. A technique for predicting the maximum mixedness washout condition from a knowledge of the residence time distribution is presented and used to determine the washout condition for the dispersion model under maximum mixedness conditions.     

Pelvic infection: a comparison of the Dalkon shield and three other intrauterine devices.

A detailed analysis was undertaken of reports of possible pelvic infection in relation to the use of four commonly fitted intrauterine contraceptive devices during 1971 to 1978 in the United Kingdom. The four devices were the Dalkon shield, Lippes loops 3C and 2D, and the Gravigard (copper 7), and data used were those collected systematically through the UK intrauterine device research network. Prospective reports that the Dalkon shield was uniquely related to high levels of infection when compared with other intrauterine devices were not substantiated in this prospective study among 13 349 users. Though some factors such as social class and previous experience of abortion appeared to influence the rate of infection, the type of intrauterine device being worn did not appear to be a significant factor. Various methods of analysis were used including life table, regression, and discriminant analysis, using information relating to the type of intrauterine device worn, the characteristics of the user, the fitting centre, and the pattern of diagnosis and treatment of reported or suspected pelvic infection. The results of this study suggest that fears that the Dalkon shield may be associated with a higher incidence of pelvic infection than other intrauterine devices may have been unjustified.