Effect of tree species identity and related habitat parameters on understorey bryophytes – interrelationships between bryophyte,soil and tree factors in a 50-year-old experimental forest

Plant and Soil - Overstorey tree species influence both soil properties and microclimate conditions in the forest floor, which in turn can induce changes in ground bryophyte communities. The aim of...     

The pristine rain forest? Remnants of historical human impacts on current tree species composition and diversity

Abstract Aim Tropical rain forests are often regarded as pristine and undisturbed by humans. In Central Africa, community‐wide disturbances by natural causes are rare and therefore current theory predicts that natural gap phase dynamics structure tree species composition and diversity. However, the dominant tree species in many African forests recruit poorly, despite the presence of gaps. To explain this, we studied the disturbance history of a species‐rich and structurally complex rain forest. Location Lowland rain forest in Southern Cameroon. Methods We identified the recruitment conditions of trees in different diameter classes in 16 ha of species‐rich and structurally complex ‘old growth’ rain forest. For the identification of recruitment preference we used independent data on the species composition along a disturbance gradient, ranging from shifting cultivation fields (representing large‐scale disturbance), to canopy gaps and old growth forest. Results In nine of sixteen 1‐ha forest plots the older trees preferred shifting cultivation fields for recruitment while younger trees preferred gaps and closed forest conditions. This indicates that these nine sites once experienced large‐scale disturbances. Three lines of evidence suggest that historical agricultural use is the most likely disturbance factor: (1) size of disturbed and undisturbed patches, (2) distribution of charcoal and (3) historical accounts of human population densities. Main conclusions Present‐day tree species composition of a structurally complex and species‐rich Central African rain forest still echoes historical disturbances, most probably caused by human land use between three to four centuries ago. Human impact on African rain forest is therefore, contrary to common belief, an issue not of the last decades only. Insights in historical use will help to get a more balanced view of the ‘pristine rain forest’, acknowledging that the dualism between ‘old growth’ and ‘secondary’ forest may be less clear than previously thought.     

Restoration of beech forest for saproxylic beetles—effects of habitat fragmentation and substrate density on species diversity and distribution

The influence of spatial location and density of beech snags on species diversity and distribution patterns of saproxylic beetles was studied in a 2,400 ha forest landscape in southern Sweden. Complete snag surveys were combined with a beetle survey using small window traps directly attached to the beech snags. The density of beech snags ≥30 cm dbh varied between one and seven snags per ha within the study area, corresponding to 1.1–5.1 m³/ha. A total of 2,610 specimens of 180 saproxylic beetles species were trapped, of which 19 species were red-listed. Within the study area, the number of red-listed and formerly red-listed species was highest around traps in old-growth stands, intermediate in managed stands contiguous with old-growth and lowest in managed stands isolated from old-growth by a two km-wide zone without beech forest. Logistic regressions revealed negative relationships between distance to old-growth forest and occurrence of eleven species, among them six red-listed or formerly red-listed species. The number of non red-listed species was not correlated with isolation from old-growth forest. The number of red-listed species also increased with snag density within 200–300 m around the traps. Our results suggest that red-listed species generally have a lower dispersal capacity than other saproxylic beetles. We conclude that retention of dead wood close to existing populations is more beneficial for red-listed species than an even distribution of snags across the forest landscape.     

Effect of sex ratio,habitat factors and neighborhood competition on stem growth in the dioecious tree Fraxinus mandshurica

Growth rates of male and female trees are often different in a dioecious species. In this study, we analyzed sex ratios and the effect of gender, neighborhood competition and habitat factors on the stem growth of dioecious Fraxinus mandshurica trees in a secondary conifer and broad-leaved mixed forest in the Changbai Mountains of northeastern China. The sex ratio in the 5.2-ha study area does not deviate significantly from the expected 1:1 ratio, except for trees in the large diameter classes. For dbh >40 cm, the sex ratio is male-biased. This result suggests that males have a faster rate of stem growth than females, which is usually explained by the higher cost of reproduction in the fruit-bearing females. An analysis of the dbh distributions of two successive measurements showed that the rate of stem growth of the (27) females drops off with increasing dbh and remains below that of the (35) males. A causal model was used to analyze factors affecting the rate of stem growth, showing that these rates are affected significantly and positively by soil moisture and tree size in both genders and that within-gender competition is mainly for nitrogen. Our study suggests that neighborhood competition does not affect stem growth significantly, which is a rather surprising result.     

Tree distribution pattern and fate of juveniles in a lowland tropical rain forest – implications for regeneration and maintenance of species diversity

Three analyses of species diversity in a lowland dipterocarp forest were conducted to examine whether the nature of forest community dynamics are determined by density-dependent recruitment and mortality of saplings with a data set obtained in a 50 ha plot in Pasoh Forest Reserve. The first analysis examined whether sapling density varied as a function of distance from the nearest conspecific adult. The second analysis assessed the relationship between the spatial distribution patterns of saplings and adult trees. A third analysis examined sapling recruitment and mortality based on data from 2 censuses, taken in 1985 and 1990. Four hundred forty-four species (each with more than 100 individuals) out of the total of 814 species recorded in the plot, were chosen for the analyses. Of these selected species, 56 species showed significant reduction in sapling densities close to the conspecific adults. Within this group, 11 species were in the emergent layer (29.0% of the total species in this layer), 17 were in the canopy layer (10.5%), 18 were in the understory layer (11.3%), and 10 were in treelet and shrub layer (11.8%). In contrast, the sapling densities of 53 species decreased with increasing distance from conspecific adults; 2 of these species were in the emergent layer (5.2% of the total species in this layer), 14 were in the canopy layer (8.6%), 21 were in the understory layer (13.2%), and 16 were in the treelet and shrub layer (18.8%). The saplings of 35 of the 444 total selected species were clumped, while adults were regularly or randomly distributed. Of the remaining species, in 183 species (41.2%), the distributions of both adults and saplings were clumped. Thus, these 2 analyses do not support the prediction that most of the species of lowland tropical forests fail to produce new adults in their vicinity and as a result of this, adult trees are more regularly distributed than their conspecific juveniles (Janzen 1970). In the third analysis, the recruitment of saplings of species in the emergent and canopy layers increased significantly and in proportion with mortality, suggesting that the dominant species suffer higher mortality than do less common species. This trend is not so apparent in the understory, and the treelet and shrub layers. The results imply that a dynamic equilibrium process, which prevents competitive exclusion and maintains space for minor species, may be active among the species in the upper layers (particularly the emergent layer); however, such a dynamic equilibrium condition is not due exclusively to the reduced recruitment of saplings near conspecific adults, and the dynamic equilibrium condition is not prevalent among the lower story species.     

The influence of habitat conditions on the performance of two invasive,annuals — Impatiens glandulifera and Bidens frondosa

The investigations of habitat conditions on the variability of selected population features in the two invasive, annuals with different life-history traits were conducted in the years 2008–2010, in the Polish part of the Carpathian Mountains in communities characterized by the gradual decrease of light availability. The individuals of Impatiens glandulifera were surveyed along roadsides, in willow thickets, as well as inside and along the edges of the riparian forest, whereas the individuals of Bidens frondosa were observed in riverside gravels characterized by a different species composition. Each year, the number and density of individuals (stems) occurring in the particular sites were examined, as well as the height and the fruit production in 30 randomly chosen stems were surveyed. Moreover, the number of seeds per fruit, the diaspore dimensions and the seedling recruitment in laboratory conditions were examined during each season. As the values of height of individuals, number of fruits per stem, number of seeds per fruit, as well as the seedling abundance in some groups were not consistent with the normal distribution and the variances were not homogeneous, the non-parametric Kruskal-Wallis test was used in statistical analyses. Much greater number and density of individuals of Impatiens glandulifera were found in riparian forest, than in willow thickets and along the roadsides. In all sites the number and density of individuals increased steadily in consecutive seasons. The great number and density of Bidens frondosa individuals observed in shady and partly shady sites during the first year of studies raised in the second year and subsequently dramatically decreased in the third season. The lowest number and density of individuals noted in the first season in unshaded site raised substantially in subsequent years. The height of stems, as well as seed and fruit production of both taxa diminished with a decrease of height of neighboring plants. The seed dimensions presented the spatial and temporal variability, whereas the number of seedlings among consecutive years and in successive sites did not differ. The considerable height of the individuals of Impatiens glandulifera, high production of large fruits and seeds in open and dry roadside areas can contribute to more effective ballistic dissemination, while substantial seedling recruitment enables the colonization of new, perhaps more advantageous sites. On the other hand, lower individual height, as well as fruit and seed production and considerable seedling emergence allow the population to last and to gradually extend the area in forest communities. The considerable abundance of the high-statured Bidens frondosa individuals, substantial production of large capitula and achenes contribute to long persistence of populations in open and sun-lit sites. The gradually decrease in the height of the stems, achene number and size observed in partly-shaded and shaded places might allow to long-distance dispersal of seeds by animals, while substantial seedling recruitment might contribute to establishment in new areas.     

Development and characterization of 15 microsatellite loci for Cariniana estrellensis and transferability to Cariniana legalis, two endangered tropical tree species

From a genomic library enriched for GA/CA repeats, 15 highly polymorphic microsatellite markers were developed for Cariniana estrellensis, a tropical forest tree. The microsatellite loci were screened in 49 mature trees found between Pardo river and Mogi-Guaçu river basins, in the state of São Paulo, Brazil. A total of 140 alleles were detected with an average of 9.33 alleles per locus. The expected heterozygosity ranged from 0.37 to 0.88. These loci showed a high probability of paternity exclusion. Additionally, 12 loci were effectively transferred to Cariniana legalis. High levels of polymorphism make the present SSR markers useful for population genetic studies.     

Effect of zinc binding on β-amyloid structure and dynamics: implications for Aβ aggregation

Assembly of β-amyloid (Aβ) peptide into toxic oligomers is widely believed to initiate Alzheimer's disease pathogenesis. Under in vitro physiological conditions, zinc (Zn(II)) can bind to Aβ and redirect its assembly from amyloid fibrillar toward less toxic amorphous aggregation. Propensity of Aβ to go toward a specific form of aggregate state is determined by structural and dynamical properties of the initial monomeric as well as the aggregate state. Here we probe the structural and dynamical impact of binding of Zn(II) to monomeric Aβ40 using NMR spectroscopy. To obtain further support for the importance of intrinsic dynamics in the aggregation precursor, ¹⁵N relaxation measurements were also performed for Aβ42, the more fibrillar aggregation-prone variant of Aβ. The combined data suggest that, upon Zn(II)-binding to the N-terminus of Aβ40, a relatively rigid turnlike structure is induced at residues Val²⁴-Lys²⁸ whereas the residues flanking this region become more mobile on the picosecond-to-nanosecond timescale. This is in contrast to the increased rigidity of Aβ42 at the C-terminus, and proposed to be linked to the higher propensity of Zn(II)-bound peptide to form amorphous aggregates with less entropic penalties than their fibrillar counterparts.     

Assesing nutrient sustainability of forest production for different tree species considering Ca, Mg, K, N and P at Björnstorp Estate, Sweden

An assessment of nutrient sustainability has been done for stands of European beech, Sycamore maple, European oak, Norway spruce, Larch, Grandis fir and Douglas fir at Björnstorp Estate in southern Sweden. To estimate the nutrient sustainability, mass balance was calculated with respect to Ca, Mg, K, N and P. The release from mineral weathering was calculated using the PROFILE model. The leaching has been estimated from observed soil water concentrations and nutrients removed by harvest from projected production. The results indicate that the planned production is on the limits of sustainability and sometimes in excess of it. The stands will overuse Ca, sometimes also Mg, K and P, if all growth is harvested. Soil acidification is still progessing at Björnstorp Estate, and soil depletion is the result of this. The estimated sustainable yield and the mass balances suggest that the leaching rate is the most uncertain factor for assessing sustainability. Different types of critical loads were investigated, including a new type, based on no excess acidity in the system. The calculations stress the importance of reducing the acid deposition and that nutrient sustainable management must be included in forest management.     

What determines species composition and diversity of hypogeous fungi in the diet of small mammals? A comparison across mammal species,habitat types and seasons in Central European mountains

Interactions between diverse groups of organisms influence the functioning and diversity of ecosystems. Salient examples of such relationships are those among hypogeous fungi, trees and mycophagous mammals. To investigate the role of small mammals in transporting fungal spores within and outside forests as well as the influence of seasons, habitats and species on small mammal mycophagy, we set up a study in the Pieniny Mts, Western Carpathians (Southern Poland). The droppings of small mammals were collected during live trapping in July and September 2016 and 2017, to analyze richness, composition and frequency of fungal spores present in faeces. The yellow-necked mouse Apodemus flavicollis, the bank vole Myodes glareolus and the common vole Microtus arvalis were the most frequently trapped. Spores of 27 fungal taxa from 16 genera were retrieved from nearly 70% of faecal samples of rodents and shrews, with up to 9 spore taxa recorded per sample. Spore diversity in samples was higher in September than in July, although seasonal variation was year and animal dependent. The highest mean number of fungal taxa per sample was recorded for the bank vole and the yellow-necked mouse, with the former species showing a higher degree of mycophagy. The two rodents differed in the average frequencies of consumed fungi in samples, which could result from some degree of specialization in the choice of particular fungal species, as shown by the laboratory-based experiment. Within particular animal species, differences in the fungal diet were found between seasons. The spores of hypogeous fungi were transported from forests to meadows mostly by the yellow-necked mouse and, to a lesser extent, by the common vole. However, both, the diversity and the number of transported spores diminished with distance from the forest edge.     

Seasonality of leaf litter and leaf area index data for various tree species in a cool-temperate deciduous broad-leaved forest,Japan, 2005–2014

This paper reports seasonal data regarding leaf litter for 14 deciduous broad-leaved species and one evergreen coniferous species as well as leaf area index (LAI) data for the 14 deciduous broad-leaved species in a cool-temperate deciduous broad-leaved forest in Japan. The seasonal leaf biomass of various tree species is important for accurately evaluating ecosystem functions such as photosynthesis and evapotranspiration under climate change. However, there is a lack of freely available, long-term data. We collected litterfall every 1 to 4 weeks from September or October to November or December each year from 2005 to 2014 in Takayama, Japan (36°08′46″N, 137°25′23″E, 1420 m a.s.l.). After sorting the litter into leaves (according to species categories), stems + branches, and “other”, we dried and weighed the litter groups. We also collected seasonal leaf data (number of leaves and leaf length and width) for each broad-leaved species, which we recorded every 1 to 4 weeks from April or May to October or November using multiple target shoots. To estimate the LAI in autumn for each deciduous broad-leaved species, we used a semi-empirical model of the vertical integration of leaf dry mass per unit leaf area. To estimate the LAI in spring and summer, we used the relationship between the LAI in autumn and the seasonal leaf data. Our data provide input, calibration, and validation parameters for determining LAI based on satellite remote-sensing observations or radiative transfer models and for use in ecosystem models.     

Effect of metalaxyl,fosetyl‐al,dimethomorph, cymoxanil on development and control Phytophthora on peach tree in vitro

Four fungicides were evaluated for their effectiveness against Phytophthora diseases of peach trees and their ability to absorbed and translocated by roots of peach tree in laboratory. Meta‐laxyl suppressed the development of P. cactorum and P. citwphthora on segments. Fosetyl‐Al showed variable fungicidal activity against P. cactorum and P. citwphthora. Both dimetho‐morph and cyraoxanil were not effective to inhibit the growth of fungi on segments. Section of tree trunks in 2‐yr‐old GF 677 trees were painted with one of the test fungicides. Strips of bark were removed 10 and 20 days after painting within treated area and inoculated with P. cactorum and P. citwphthora. Generally, the results agree with them obtained with excised stem and excised twig methods. Exception is the dimethomorph that reduced the development of P. cartorum and P. citrophthora. This study indicated that application with metalaxyl to the peach tree appears to be an effective procedure to control Phytophthora diseases on peach trees.     

Nitrous oxide and methane exchange in two small temperate forest catchments—effects of hydrological gradients and implications for global warming potentials of forest soils

The magnitude of greenhouse gas (GHG) flux rates may be important in wet and intermediate wet forest soils, but published estimates are scarce. We studied the surface exchange of methane (CH₄) and nitrous oxide (N₂O) from soil along toposequences in two temperate deciduous forest catchments: Strødam and Vestskoven. The soil water regime ranged from fully saturated to aerated within the catchments. At Strødam the largest mean flux rates of N₂O (15 μg N₂O-N m^?2 h^?1) were measured at volumetric soil water contents (SWC) between 40 and 60% and associated with low soil pH compared to smaller mean flux rates of 0-5 μg N₂O-N m^?2 h^?1 for drier (SWC < 40%) and wet conditions (SWC > 80%). At Vestskoven the same response of N₂O to soil water content was observed. Average CH₄ flux rates were highly variable along the toposequences (?17 to 536 μg CH₄-C m^?2 h^?1) but emissions were only observed above soil water content of 45%. Scaled flux rates of both GHGs to catchment level resulted in emission of 322 and 211 kg CO₂-equivalents ha^?1 year^?1 for Strødam and Vestskoven, respectively, with N₂O contributing the most at both sites. Although the wet and intermediate wet forest soils occupied less than half the catchment area at both sites, the global warming potential (GWP) derived from N₂O and CH₄ was more than doubled when accounting for these wet areas in the catchments. The results stress the importance of wet soils in assessments of forest soil global warming potentials, as even small proportions of wet soils contributes substantially to the emissions of N₂O and CH₄.     

Effect of polyols on the structure and aggregation of recombinant human γ-Synuclein,an intrinsically disordered protein

Polyol osmolytes accumulated in cells under stress are known to promote stability in globular proteins with respect to their increasing hydroxyl groups but their effect on the structure, stability and aggregation of intrinsically disordered proteins (IDPs) is still elusive. The lack of a natively folded structure in intrinsically disordered proteins under physiological conditions results in their aggregation and fibrillation that gives rise to a number of diseases. We have investigated the effect of a series of polyols, ethylene glycol (EG), glycerol, erythritol, xylitol and sorbitol on the fibrillation pathway of recombinant human γ-Synuclein, used as a model, for an IDP known to form fibrils that play a role in neurodegeneration and cancer. With an increase in the number of –OH groups in polyols except EG, we observe a decrease in lag time for fibrillation at equimolar concentrations, suggesting stronger preferential exclusion of polyols that promotes γ-Syn self-association and oligomerization. The polyols act early during nucleation and their diverse effect on the rate of fibrillation suggests the role of favourable solvent-side chain interactions. With increasing –OH group, polyols stabilize the natively unfolded conformation of γ-Syn under non-fibrillating conditions and delay the structural transition to characteristic β-sheet structure by forming an α-helical intermediate during fibrillation. The results, overall suggest that the effect of osmolytes on IDPs is much more complex than their effect on globular protein stability and aggregation and a fine balance between the dominant unfavourable osmolyte-peptide backbone and favourable osmolyte-charged side chain interactions would govern their stability and aggregation properties.     

What determines "suitable habitat" for metapopulation studies? An analysis of environmental gradients and species assemblages in xeric forest openings

? Premise of the study: For metapopulation and metacommunity studies, "suitable habitat" is an area within an otherwise inhospitable matrix in which a species can potentially or does occur. When examining aquatic habitats, for example, this habitat is much easier to define than in terrestrial regions. We tested the assumption that suitable habitat can be delimited in terrestrial ecosystems. ? Methods: We surveyed vascular plant species found in 38 forest openings (open suitable habitats) within a matrix of dry forest (an inhospitable habitat) at three sites in southern Illinois over two growing seasons. We compared species composition and environmental variables between these two habitats at three sites using non-metric multidimensional scaling (NMDS) and analysis of similarity (ANOSIM). ? Key results: Distinctions such as high canopy openness and high soil temperature were common to all forest openings compared with the forest matrix. Differences in canopy openness and soil temperature were correlated with significantly different vegetation between forest openings and forest matrix at each of the three sites. Among the three sites, 9.3-18.9% were forest opening specialists, consisting of 44 taxa, of which the majority were herbaceous forbs. ? Conclusions: The distinction between suitable and unsuitable habitat for some plant species may depend on a few variables, which may not be consistent between sites. This distinction means that there are potentially more situations than previously thought that metapopulation and metacommunity theory may be capable of explaining, meaning that more systems can be studied using a metapopulation context than previously thought.     

Effects of habitat fragmentation on foraging behaviour of tits and related species: does niche space vary in relation to size and degree of isolation of forest fragments?

We studied the winter foraging niches of tits and related species in deciduous forest fragments varying in size between 1 and 30 ha (plus one forest of 200 ha) in order to investigate the influence of forest fragmentation on foraging niches Very few correlations between niche structure (foraging niche, width and overlap) and forest size or isolation turned out to be significant This implies that either the species that disappear in small fragments are those that suffer most from competition (making the effect unmeasurable), or that competition is relatively unimportant for niche structure In any case we find no evidence that foraging niches are strongly affected by the changes (in habitat and/or community structure) associated with fragmentation