Use of colloidal gold and ruthenium red in stereo high-voltage electron microscopic study of Con A-binding sites in mouse macrophages

Summary Concanavalin A (Con A)-binding sites were labeled with colloidal gold (CG), stained with ruthenium red, and observed under a high-voltage electron microscope. Mouse peritoneal macrophages were labeled by the indirect Con A/CG labeling method at 0° C. After washing, some of the cells were incubated in phosphate-buffered saline (PBS) at 37° C. The specimens were then stained with ruthenium red, to enhance the contrast of the cell surface, and embedded in Epon. Sections (0.33 m thick) were cut and examined by high-voltage electron microscopy at accelerating voltages of 2001,000 kV. Staining with ruthenium red provided a strong contrast of the cell surface and the invaginating tubules beneath it against the cytoplasm; in thick sections, both of them were clearly seen by stereomicroscopy. CG particles which represented Con A-binding sites were also sufficiently electron dense to be recognized by high-voltage electron microscopy of thick sections. The two- and three-dimensional distribution of CG particles on the ruthenium-red-positive cell surface was clearly visualized. At 0° C, Con A-binding sites were randomly distributed on the cell surface. The redistribution and endocytosis of Con A-binding sites were seen at 37° C. The three-dimensional organization of membrane invagination, which represented the process of endocytosis, was clearly seen by stercomicroscopy. The combination of CG labeling and ruthenium red staining is a useful method for high-voltage electron microscopic analysis of the two- and three-dimensional distribution of CG-labeled ligands on the cell surface in thick sections.     

Use of colloidal gold and ruthenium red in stereo high-voltage electron microscopic study of Con A-binding sites in mouse macrophages

Concanavalin A (Con A)-binding sites were labeled with colloidal gold (CG), stained with ruthenium red, and observed under a high-voltage electron microscope. Mouse peritoneal macrophages were labeled by the indirect Con A/CG labeling method at 0 degree C. After washing, some of the cells were incubated in phosphate-buffered saline (PBS) at 37 degrees C. The specimens were then stained with ruthenium red, to enhance the contrast of the cell surface, and embedded in Epon. Sections (0.3 approximately 3 micron thick) were cut and examined by high-voltage electron microscopy at accelerating voltages of 200 approximately 1,000 kV. Staining with ruthenium red provided a strong contrast of the cell surface and the invaginating tubules beneath it against the cytoplasm; in thick sections, both of them were clearly seen by stereomicroscopy. CG particles which represented Con A-binding sites were also sufficiently electron dense to be recognized by high-voltage electron microscopy of thick sections. The two- and three-dimensional distribution of CG particles on the ruthenium-red-positive cell surface was clearly visualized. At 0 degree C, Con A-binding sites were randomly distributed on the cell surface. The redistribution and endocytosis of Con A-binding sites were seen at 37 degrees C. The three-dimensional organization of membrane invagination, which represented the process of endocytosis, was clearly seen by stereomicroscopy. The combination of CG labeling and ruthenium red staining is a useful method for high-voltage electron microscopic analysis of the two- and three-dimensional distribution of CG-labeled ligands on the cell surface in thick sections.     

Carbohydrates in water-stable aggregates and particle size fractions of forested and cultivated soils in two contrasting tropical ecosystems

Information on changes in storage and loss of soil organic carbon (SOC) when tropical forests are converted to cropland is needed for evaluating soil structural degradation and for selecting appropriate sustainable soil management practices. We evaluated changes in SOC storage of organic carbon and acid-hydrolyzable carbohydrates content of aggregated classes and particle size fractions of adjacent forested and cultivated soils in eight agroecosystems from Ethiopian highlands and Nigerian lowlands. In all agroecosystems, SOC content was two to four times higher in the forested than the cultivated soils. Higher SOC content was found in Ethiopian (20.2–47.3 g.kg^–1) than Nigerian (12.0–24.0 g.kg^–1) forested soils. The magnitude of reduction in SOC and total carbohydrates with cultivation was soil-specific, being generally higher in the sandy than the clayey soils. The smaller aggregate classes (< 1.00 mm) and the sand-sized particles (2000–63 µm) of the forested soils were preferentially enriched in carbohydrates relative to larger aggregates (4.75–1.00 mm). Carbohydrates were more concentrated in the clay-size fraction of the forested than in that of the cultivated soils. Cultivation reduced aggregate stability, increased the proportions of the smaller size aggregates and their associated carbohydrates relative to the forested soils. The susceptibility of the cultivated soils to loss in structural stability reflected this initial aggregation which was greater in the more stable clayey than the fragile sandy soils. The aggregate stability of either the forested or the cultivated soil could not be accounted for by the levels of OC or total carbohydrates in the soil.     

Dynamics of Soil Organic Carbon and Aggregate Stability with Grazing Exclusion in the Inner Mongolian Grasslands

Grazing exclusion (GE) has been deemed as an important approach to enhance the soil carbon storage of semiarid grasslands in China; however, it remains unclear how different organic carbon (OC) components in soils vary with the duration of GE. Here, we observed the changing trends of different OC components in soils with increased GE duration in five grassland succession series plots, ranging from free grazing to 31-year GE. Specifically, we measured microbial biomass carbon (MBC), easily oxidizable OC (EOC), water-soluble OC (WSOC), and OC in water stable aggregates (macroaggregates [250–2000 μm], microaggregates [53–250 μm], and mineral fraction [< 53 μm]) at 0–20 cm soil depths. The results showed that GE significantly enhanced EOC and WSOC contents in soils, but caused a decline of MBC at the three decade scale. Macroaggregate content (F = 425.8, P < 0.001), OC stored in macroaggregates (F = 84.1, P < 0.001), and the mean weight diameter (MWD) of soil aggregates (F = 371.3, P < 0.001) increased linearly with increasing GE duration. These findings indicate that OC stored in soil increases under three-decade GE with soil organic matter (SOM) stability improving to some extent. Long-term GE practices enhance the formation of soil aggregates through higher SOM input and an exclusion of animal trampling. Therefore, the practice of GE may be further encouraged to realize the soil carbon sequestration potential of semi-arid grasslands, China.     

Possible role of soil microorganisms in aggregation in soils

In many soils, roots and fungal hyphae, especially those of vesicular arbuscular mycorrhizal (VAM) fungi, stabilize macroaggregates (>250 μm diameter); organic residues, bacteria, polysaccharides and inorganic materials stabilize microaggregates (<250 μm). This review discusses the factors (including other organisms) which affect VAM hyphae and their extracellular polysaccharides in soil, and the subsequent effect on stability of aggregates. The review also discusses the possible role of other organisms, including ectomycorrhizal fungi, in the stability of soil, and suggests future research.     

Capsulation of in vitro and in vivo grown Bacteroides species

By centrifugation on a four step Percoll density gradient cells of Bacteroides species could be separated according to the size of extracellular structure. The difference in size was visible by both light and electron microscopy. Two structures were observed on Bacteroides fragilis by electron microscopy, namely a fibrous network and an electron dense layer. An electron dense layer was visible on Bacteroides ovatus only when stained with ruthenium red. B. fragilis cells grown in the mouse peritoneal cavity did not produce a large fibrous network. An electron dense layer was observed on some cells in the presence of ruthenium red stain and cells possessing this layer were phagocytosed in vivo.     

Effects of forest conversion into grassland on soil aggregate structure and carbon storage in Panama: evidence from soil carbon fractionation and stable isotopes

Land-use and land-cover strongly influence soil properties such as the amount of soil organic carbon (SOC), aggregate structure and SOC turnover processes. We studied the effects of a vegetation shift from forest to grassland 90 years ago in soils derived from andesite material on Barro Colorado Island (BCI), Panama. We quantified the amount of carbon (C) and nitrogen (N) and determined the turnover of C in bulk soil, water stable aggregates (WSA) of different size classes (<53 μm, 53–250 μm, 250–2000 μm and 2000–8000 μm) and density fractions (free light fraction, intra-aggregate particulate organic matter and mineral associated soil organic C). Total SOC stocks (0–50 cm) under forest (84 Mg C ha⁻¹) and grassland (64 Mg C ha⁻¹) did not differ significantly. Our results revealed that vegetation type did not have an effect on aggregate structure and stability. The investigated soils at BCI did not show higher C and N concentrations in larger aggregates, indicating that organic material is not the major binding agent in these soils to form aggregates. Based on δ¹³C values and treating bulk soil as a single, homogenous C pool we estimated a mean residence time (MRT) of 69 years for the surface layer (0–5 cm). The MRT varied among the different SOC fractions and among depth. In 0–5 cm, MRT of intra-aggregate particulate organic matter (iPOM) was 29 years; whereas mineral associated soil organic C (mSOC) had a MRT of 124 years. These soils have substantial resilience to C and N losses because the >90% of C and N is associated with mSOC, which has a comparatively long MRT.     

Electronmicroscopical detection of iota-Carrageenan as its ruthenium red complex

Summary Specific detection of iota-Carrageenan (i-CAR) at the ultrastructural level has been obtained by coupling with ruthenium red (RR) — an electron microscopic stain. The i-CAR-RR complex showed electron density on carbon layers. Peritoneal macrophages were treated with the complex and after 3 h it caused the same morphological changes in macrophages as iota-Carrageenan alone. On the surfaces of macrophages, fine filamentous electron dense material — the i-CAR-RR complex — was detected.     

Endocytosis by platelets during cationized ferritin-induced aggregation

Summary Localization of cationized ferritin (CF) particles in the process of CF-induced aggregation of rabbit platelets was investigated by electron microscopy. CF particles attached to the surface membrane of discoidal platelets immediately after the addition of CF. Some platelets were connected to each other through the CF particles located on their surfaces. At 30 s after the addition of CF, aggregation of platelets in round form was observed. During the time course of aggregation, CF particles moved to the interplatelet spaces. Also CF particles were found in the open canalicular system, the membrane component of which was stained with ruthenium red. On the other hand, CF particles were also found in ruthenium-red-negative vesicles in platelets. At 180 s after, CF particles containing vacuoles, which showed acid phosphatase activity, were observed in the aggregates. These results suggest that part of CF particles may be incorporated into the cytoplasma by endocytosis.     

Preparation and use of recombinant protein G-gold complexes as markers in double labelling immunocytochemistry

Summary Recombinant protein G (RPG) was conjugated to colloidal gold particles and used for immunocytochemistry. In this report, the preparation of RPG—gold conjugates (RPGG) and the application of these conjugates in spot blot tests and in double immunolabelling are described. The immunolabelling was performed on ultracryosections of pig small intestine using antibodies directed against aminopeptidase N and sucrase—isomaltase. The labelling efficiency of RPGG was compared to that of protein A—gold conjugates (PAG) in different compartments of the enterocyte. Quantification showed that the labelling intensity was dependent on the size of the marker as well as on the kind of protein used for complex formation. The distributions for RPGG and PAG were respectively: for the 12nm particles, 10.3 and 6.2 particles/µm of length of microvillar membrane, 3.5 and 1.0 particles/µm² of Golgi profile and 5.9 and 2.0 particles/µm² of multivesicular body profile; and for the 6nm particles, 49.6 and 15.7 particles/µm of length of microvillar membrane, 24.4 and 5.0 particles/µm² of Golgi profile and 25.4 and 3.4. particles/µm² of multivesicular body profile. Controls showed very little non-specific gold labelling (<0.02 gold particles/µm² of section).     

Association of Soil Aggregation with the Distribution and Quality of Organic Carbon in Soil along an Elevation Gradient on Wuyi Mountain in China

Forest soils play a critical role in the sequestration of atmospheric CO₂ and subsequent attenuation of global warming. The nature and properties of organic matter in soils have an influence on the sequestration of carbon. In this study, soils were collected from representative forestlands, including a subtropical evergreen broad-leaved forest (EBF), a coniferous forest (CF), a subalpine dwarf forest (DF), and alpine meadow (AM) along an elevation gradient on Wuyi Mountain, which is located in a subtropical area of southeastern China. These soil samples were analyzed in the laboratory to examine the distribution and speciation of organic carbon (OC) within different size fractions of water-stable soil aggregates, and subsequently to determine effects on carbon sequestration. Soil aggregation rate increased with increasing elevation. Soil aggregation rate, rather than soil temperature, moisture or clay content, showed the strongest correlation with OC in bulk soil, indicating soil structure was the critical factor in carbon sequestration of Wuyi Mountain. The content of coarse particulate organic matter fraction, rather than the silt and clay particles, represented OC stock in bulk soil and different soil aggregate fractions. With increasing soil aggregation rate, more carbon was accumulated within the macroaggregates, particularly within the coarse particulate organic matter fraction (250–2000 μm), rather than within the microaggregates (53–250μm) or silt and clay particles (< 53μm). In consideration of the high instability of macroaggregates and the liability of SOC within them, further research is needed to verify whether highly-aggregated soils at higher altitudes are more likely to lose SOC under warmer conditions.     

Organic matter and soil biota of upland wetlands in Taylor Valley,Antarctica

In January 2001, we surveyed streams and ponds above 300 m a.s.l. in Taylor Valley, South Victoria Land, Antarctica. One pond was examined in detail. Organic materials covered nearly 100% of the adjacent soil to 5–20 m from the shore, with intermittent patches to 80 m. Organic matter averaged 257 g C/m², and totaled 1,388 kg organic C on the soil around the pond. Soil-moisture content (0.56–12.41%) decreased with distance from shore, whereas pH (7.8–10.8) increased with distance. Electrical conductivity was lowest in the soils <10 m from the pond (416±94 µS/cm). Mineral soil organic C and total N concentrations were greatest between 10 and 30 m from the edge of the pond (1.21±0.37 and 0.13±0.05 mg/g soil, respectively). Soil invertebrates were present in only 50% of samples and included tardigrades, rotifers, and two nematodes, Scottnema lindsayae and Plectus antarcticus. A non-parametric, discriminant function analysis based on soil moisture, soil organic carbon, and electrical conductivity correctly predicted 87.0% of sites that had invertebrates and 70.8% of sites for which invertebrates were absent. Tardigrades, rotifers, and P. antarcticus were found only in the wettest soils nearest the pond whereas S. lindsayae was restricted to drier soils further from shore. Other ponds and streams also showed substantial accumulations of organic matter, suggesting that upland wetlands serve as resource islands in these polar deserts that provide a source of organic matter to nearby soils.     

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

Neutrophilic Fe-oxidizing bacteria (FeOB) are often identified by their distinctive morphologies, such as the extracellular twisted ribbon-like stalks formed by Gallionella ferruginea or Mariprofundus ferrooxydans. Similar filaments preserved in silica are often identified as FeOB fossils in rocks. Although it is assumed that twisted iron stalks are indicative of FeOB, the stalk''s metabolic role has not been established. To this end, we studied the marine FeOB M. ferrooxydans by light, X-ray and electron microscopy. Using time-lapse light microscopy, we observed cells excreting stalks during growth (averaging 2.2 μm h⁻¹). Scanning transmission X-ray microscopy and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy show that stalks are Fe(III)-rich, whereas cells are low in Fe. Transmission electron microscopy reveals that stalks are composed of several fibrils, which contain few-nanometer-sized iron oxyhydroxide crystals. Lepidocrocite crystals that nucleated on the fibril surface are much larger (∼100 nm), suggesting that mineral growth within fibrils is retarded, relative to sites surrounding fibrils. C and N 1s NEXAFS spectroscopy and fluorescence probing show that stalks primarily contain carboxyl-rich polysaccharides. On the basis of these results, we suggest a physiological model for Fe oxidation in which cells excrete oxidized Fe bound to organic polymers. These organic molecules retard mineral growth, preventing cell encrustation. This model describes an essential role for stalk formation in FeOB growth. We suggest that stalk-like morphologies observed in modern and ancient samples may be correlated confidently with the Fe-oxidizing metabolism as a robust biosignature.     

Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth

Iron-reducing bacteria (FeRB) play key roles in anaerobic metal and carbon cycling and carry out biogeochemical transformations that can be harnessed for environmental bioremediation. A subset of FeRB require direct contact with Fe(III)-bearing minerals for dissimilatory growth, yet these bacteria must move between mineral particles. Furthermore, they proliferate in planktonic consortia during biostimulation experiments. Thus, a key question is how such organisms can sustain growth under these conditions. Here we characterized planktonic microbial communities sampled from an aquifer in Rifle, Colorado, USA, close to the peak of iron reduction following in situ acetate amendment. Samples were cryo-plunged on site and subsequently examined using correlated two- and three-dimensional cryogenic transmission electron microscopy (cryo-TEM) and scanning transmission X-ray microscopy (STXM). The outer membranes of most cells were decorated with aggregates up to 150 nm in diameter composed of ∼3 nm wide amorphous, Fe-rich nanoparticles. Fluorescent in situ hybridization of lineage-specific probes applied to rRNA of cells subsequently imaged via cryo-TEM identified Geobacter spp., a well-studied group of FeRB. STXM results at the Fe L_2,3 absorption edges indicate that nanoparticle aggregates contain a variable mixture of Fe(II)–Fe(III), and are generally enriched in Fe(III). Geobacter bemidjiensis cultivated anaerobically in the laboratory on acetate and hydrous ferric oxyhydroxides also accumulated mixed-valence nanoparticle aggregates. In field-collected samples, FeRB with a wide variety of morphologies were associated with nano-aggregates, indicating that cell surface Fe(III) accumulation may be a general mechanism by which FeRB can grow while in planktonic suspension.     

Microbial Population Structures in Soil Particle Size Fractions of a Long-Term Fertilizer Field Experiment

Soil structure depends on the association between mineral soil particles (sand, silt, and clay) and organic matter, in which aggregates of different size and stability are formed. Although the chemistry of organic materials, total microbial biomass, and different enzyme activities in different soil particle size fractions have been well studied, little information is available on the structure of microbial populations in microhabitats. In this study, topsoil samples of different fertilizer treatments of a long-term field experiment were analyzed. Size fractions of 200 to 63 μm (fine sand fraction), 63 to 2 μm (silt fraction), and 2 to 0.1 μm (clay fraction) were obtained by a combination of low-energy sonication, wet sieving, and repeated centrifugation. Terminal restriction fragment length polymorphism analysis and cloning and sequencing of 16S rRNA genes were used to compare bacterial community structures in different particle size fractions. The microbial community structure was significantly affected by particle size, yielding higher diversity of microbes in small size fractions than in coarse size fractions. The higher biomass previously found in silt and clay fractions could be attributed to higher diversity rather than to better colonization of particular species. Low nutrient availability, protozoan grazing, and competition with fungal organisms may have been responsible for reduced diversities in larger size fractions. Furthermore, larger particle sizes were dominated by α-Proteobacteria, whereas high abundance and diversity of bacteria belonging to the Holophaga/Acidobacterium division were found in smaller size fractions. Although very contrasting organic amendments (green manure, animal manure, sewage sludge, and peat) were examined, our results demonstrated that the bacterial community structure was affected to a greater extent by the particle size fraction than by the kind of fertilizer applied. Therefore, our results demonstrate specific microbe-particle associations that are affected to only a small extent by external factors.     

Improved Flotation Technique for Microscopy of In Situ Soil and Sediment Microorganisms

An improved flotation method for microscopy of in situ soil and sediment microorganisms was developed. Microbial cells were released into gellike flotation films that were stripped from soil and sediment aggregates as these aggregates were submerged in 0.5% solutions of polyvinylpyrrolidone. The use of polyvinylpyrrolidone solutions instead of water facilitated the release of films from saturated samples such as aquifer sediments as well as from typical surface soils. In situ microbial morphological characteristics could then be surveyed rapidly by light microscopy of films stained with acridine orange. This method effectively determined the ranges of morphological diversity in a variety of sample types. It also detected microcolonies and other spatial relationships among microbial cells. Only a small fraction (3.4 to 10.1%) of the microflora was released into the flotation films, but plating and direct evaluations by microscopy showed that this fraction was representative of the total population.     

Attachment of a pseudomonas sp. to Fe(III)‐(hydr)oxide surfaces

As a first step towards understanding microbial dissolution processes, our research focuses on characterizing attachment features that form between a Pseudomonas sp. bacteria and the Fe(III)‐(hydr)oxide minerals hematite and goethite. Microbial growth curves in Fe‐limited growth media indicated that the bacteria were able to obtain Fe from the Fe(III)‐(hydr)oxidesfor use in metabolic processes. A combination of scanning electron microscopy, epifluorescence, and Tapping Mode? atomic‐force microscopy showed that the bacteria colonized some fraction of mineralogical aggregates. These aggregates were covered by bacteria and were linked together by relatively open biofilms consisting of networks of fiber‐like attachment features intertwined through thin films of amorphous‐looking organic material. The biofilm material encompassed numerous individual bacteria, as well as minéralogie particles. We hypothesize that the bacteria first attached to mineral aggregates, perhaps via their flagella, forming colonies. Following initial attachment, the bacteria exuded additional attachment features in the form of fine, branching fibrils intertwined through thin films. The detailed structures of these attachment features were highlighted by Phase Imaging atomic‐force microscopy, which served as a real‐time contrast enhancement technique and showed some poorly defined sensitivity to different surface materials, most probably related to differences in stiffness or viscoelasticity. Although the mechanism of the microbially enhanced dissolution remains unknown, we hypothesize that the bacteria may have produced micro environments conducive to dissolution through the use of observed extracellular materials.     

Detection of Infectious Tobamoviruses in Forest Soils

Our objectives were to evaluate elution and bait plant methods to detect infectious tobamoviruses in forest soils in New York State. Soils were collected from two forest sites: Whiteface Mountain (WF) and Heiberg Forest (HF). The effectiveness of four buffers to elute tomato mosaic tobamovirus (ToMV) from organic and mineral fractions of WF soil amended with ToMV was tested, and virus content was assessed by enzyme-linked immunosorbent assay (ELISA). The effectiveness of Chenopodium quinoa (Willd.) bait plants to detect the virus also was tested. Both methods then were utilized to detect tobamoviruses in 11 WF and 2 HF soil samples. A phosphate buffer (100 mM, pH 7.0) eluted more ToMV from soil than the other buffers tested. Mineral soil bound more virus than organic soil. Virus recoveries from virus-amended organic and mineral soils were 3 and 10%, respectively, and the detection sensitivity was 10 to 20 ng/g of soil. Roots of bait plants grown in all virus-amended soils tested positive by ELISA, and virus concentrations averaged 10 ng/g. Both ToMV and tobacco mosaic tobamovirus (TMV) were transmitted to C. quinoa by elution from one of two HF soil samples but not from the WF soil samples. A tobamovirus was detected by bait planting in 12 of 73 (16%) root extracts representing 5 of 13 soil samples (38%). Tobamovirus-like particles were seen by transmission electron microscopy in 6 of 12 infected root extracts. Tobamoviruses occur in forest soils in New York State. Abiotic soil transmission to trees may permit localized spread and persistence of these viruses in forest ecosystems.     

Soil organic C sequestration and stabilization in karstic soils of Yucatan

The tropical semiarid soils of northwestern Yucatan, Mexico, haveexceptionally high organic matter (OM) contents, between 50 and 150 g Ckg^–1. The soils are formed on limestone and form amosaic of shallow black lithosols surrounding rock outcrops and deeper redrendzinas at slightly lower relief. Traditionally, these soils were managedunder shifting cultivation with an uncommonly short cultivation period of only2years followed by a long bush fallow. We examined OM mineral associationsusing size and density fractionations of two soils after 1 and 12 years offallow in a search for factors responsible for the high OM stability, shortcultivation period and poor productivity. Light-fraction OM accounted for up to38% of total soil OM and was responsible for almost all the OM accretion duringfallow. Red soils contained half as much OM as black soils. Lower average OMcontents of silt-size aggregates of red soils were due to a lower proportion ofOC-rich agregates, not to differences in composition of individual aggregateclasses. Expandable clays were practically absent in both soil types andsesquioxides were not related to OM contents or stability. Fine-sized secondarycarbonates, undetectable to X-ray, impreganted light fraction OM and stabilizedaggregates, and may be the principal cause of the OM accumulation.Mineralisation of coarse OM accumulated during fallow was impeded in bothsoils,but to a greater extent in the more calcareous black soils, so that relativelyundecomposed OM accumulates to well above the levels that are typical for othersemiarid tropical soils. Limited OM turnover will limit nutrient release, whichmay limit the agricultural productivity.     

Ruthenium Red—p-Phenylenediamine Staining of Monolayers to Facilitate Handling and Selection of Specific Cells for Transmission Electron Microscopy

The handling of monolayers for transmission electron microscopy has presented many problems, the main one being difficulty in visualizing the monolayers after polymerization of their plastic embedment following conventional glutaraldehyde-osmium fixation.

The application of ruthenium red—p-phenylenediamine during processing produced intensely darkened cells which could be examined and photographed either in 95% ethanol or following Spurr embedment without further treatment or sectioning. This treatment also facilitated orientation of the monolayers when re-embedding, and permitted precise localization of monolayers within flat embedding molds when trimming and thin sectioning for transmission electron microscopy.

Increased color density is the combined result of more complete retention of soluble elements during initial fixation by ruthenium red and the formation of a colored reaction product between the bound ruthenium red and osmium which is further intensified by p-phenylenediamine.