Life History Consequences of Bioenergetic and Biomechanical Constraints on Migration

In this paper I test the hypothesis that bioenergetic and biomechanicalconstraints to migration play a pivotal role in shaping thelife history characteristics of migrants. Firstly, I examinebioenergetic constraints on the ability to migrate by activetransport and how they shape the life histories of insects andfish, and, secondly, the consequences of biomechanical constraintsto the migration by passive transport in insects and spiders. In both insects and fish the mass-specific energetic costs ofactive transport (flight and swimming, respectively) decreasewith body size, and hence selection should favor large sizein migrant species. Because their habitats are ephemeral, migrantinsects must grow rapidly. In fish, migrant species are ableto exploit resources unavailable to more sedentary species andhence should also show an enhanced rate of growth. These predictionsare supported by comparisons within populations, between populations,and among species in both groups. In contrast to the above, biomechanical factors limit the uppersize at which insects and spiders can migrate by passive transport.Theory predicts that ballooning will be most likely in spidersconsiderably less than 6 mm in length. Therefore, species thatmigrate as adults are predicted to be smaller than those thatdo not. This prediction is supported by a comparison of migratoryand non-migratory spider species from the United Kingdom. Theaverage length of species that migrate as adults, and of migratingyoung of spiders too large to balloon as adults, is about 2mm. Further, within this geographic species assemblage, thesize distribution of adult spiders is markedly peaked in the2 mm region, suggesting that biomechanical constraints on ballooningmay have a major influence on the evolution of body size inspiders.     

Bioenergetic Constraints on Primate Abundance

Explaining variation in primate population densities is central to understanding primate ecology, evolution, and conservation. Yet no researchers to date have successfully explained variation in primate population density across dietary class and phylogeny. Most previous work has focused on measures of food availability, as access to food energy likely constrains the number of individuals supported in a given area. However, energy output may provide a measure of energy constraints on population density that does not require detailed data on food availability for a given taxon. Across mammals, many studies have shown that population densities generally scale with body mass^−0.75. Because individual energy expenditures scale with body mass^0.75, population energy use (the product of population density and individual energy use) does not change with body mass, which suggests the existence of energy constraints on population density across body sizes, i.e., taxa are limited to a given amount of energy use, constraining larger taxa to lower densities. We examined population energy use and individual energy expenditure in primates and tested this energy equivalence across body mass. We also used a residual analysis to remove the effects of body mass on primate population densities and energy expenditures using basal metabolic rates (BMR; kcal/d) as a proxy for total daily energy expenditure. After taking into account phylogeny, population energy use did not significantly correlate with body mass. Larger primates, which use more energy per day, live at lower population densities than smaller primates. In addition, we found a significant negative correlation between residuals of BMR from body mass and residuals of population density from body mass after taking phylogeny into account. Thus, energy costs constrain population density across a diverse sample of primates at a given body mass, and primate species that have relatively low BMRs exist at relatively high densities. A better understanding of the determinants of primate energy costs across geography and phylogeny will ultimately help us explain and predict primate population densities.     

Genetic Constraints on Protein Evolution

ABSTRACT

Evolution requires the generation and optimization of new traits (“adaptation”) and involves the selection of mutations that improve cellular function. These mutations were assumed to arise by selection of neutral mutations present at all times in the population. Here we review recent evidence that indicates that deleterious mutations are more frequent in the population than previously recognized and that these mutations play a significant role in protein evolution through continuous positive selection. Positively selected mutations include adaptive mutations, i.e. mutations that directly affect enzymatic function, and compensatory mutations, which suppress the pleiotropic effects of adaptive mutations. Compensatory mutations are by far the most frequent of the two and would allow potentially adaptive but deleterious mutations to persist long enough in the population to be positively selected during episodes of adaptation. Compensatory mutations are, by definition, context-dependent and thus constrain the paths available for evolution. This provides a mechanistic basis for the examples of highly constrained evolutionary landscapes and parallel evolution reported in natural and experimental populations. The present review article describes these recent advances in the field of protein evolution and discusses their implications for understanding the genetic basis of disease and for protein engineering in vitro.     

Structural Constraints on RNA Virus Evolution

The recently discovered hepatitis G virus (HGV) or GB virus C (GBV-C) is widely distributed in human populations, and homologues such as HGV/GBV-CCPZ and GBV-A are found in a variety of different primate species. Both epidemiological and phylogenetic analyses support the hypothesis that GB viruses coevolved with their primate hosts, although their degree of sequence similarity appears incompatible with the high rate of sequence change of HGV/GBV-C over short observation periods. Comparison of complete coding sequences (8,500 bases) of different genotypes of HGV/GBV-C showed an excess of invariant synonymous sites (at 23% of all codons) compared with the frequency expected by chance (10%). To investigate the hypothesis that RNA secondary-structure formation through internal base pairing limited sequence variability at these sites, an algorithm was developed to detect covariant sites among HGV/GBV-C sequences of different genotypes. At least 35 covariant sites that were spatially associated with potential stem-loop structures were detected, whose positions correlated with positions in the genome that showed reductions in synonymous variability. Although the functional roles of the predicted secondary structures remain unclear, the restriction of sequence change imposed by secondary-structure formation provides a mechanism for differences in net rate of accumulation of nucleotide substitutions at different sites. However, the resulting disparity between short- and long-term rates of sequence change of HGV/GBV-C violates the assumptions of the "molecular clock." This places a major restriction on the use of nucleotide or amino acid sequence comparisons to calculate times of divergence of other viruses evolving under the same structural constraints as GB viruses.     

Developmental Constraints on Vertebrate Genome Evolution

Constraints in embryonic development are thought to bias the direction of evolution by making some changes less likely, and others more likely, depending on their consequences on ontogeny. Here, we characterize the constraints acting on genome evolution in vertebrates. We used gene expression data from two vertebrates: zebrafish, using a microarray experiment spanning 14 stages of development, and mouse, using EST counts for 26 stages of development. We show that, in both species, genes expressed early in development (1) have a more dramatic effect of knock-out or mutation and (2) are more likely to revert to single copy after whole genome duplication, relative to genes expressed late. This supports high constraints on early stages of vertebrate development, making them less open to innovations (gene gain or gene loss). Results are robust to different sources of data—gene expression from microarrays, ESTs, or in situ hybridizations; and mutants from directed KO, transgenic insertions, point mutations, or morpholinos. We determine the pattern of these constraints, which differs from the model used to describe vertebrate morphological conservation (“hourglass” model). While morphological constraints reach a maximum at mid-development (the “phylotypic” stage), genomic constraints appear to decrease in a monotonous manner over developmental time.     

Hominin Obstetrics and the Evolution of Constraints

Birth is significantly more complicated and dangerous in modern humans than in other great apes. This disparity is often hypothesized to be the result of evolutionary constraints on obstetric dimensions related to bipedalism and/or thermoregulation in later hominins. Previous attempts to test such hypotheses have used biomechanical methods and results have been mixed. But evolutionary constraints, restrictions or limitations on the course or outcome of evolution, are the result of an interaction between selective pressures and genetic constraints—the latter revealed in patterns of integration. Integration between traits can result in directional or stabilizing selection on one trait leading to correlated responses in other traits, which can bias and constrain evolutionary trajectories. Therefore, trait evolution may be constrained for reasons separate from those that can be estimated using biomechanical models, and to study evolutionary constraints it is necessary to understand the role genetic constraints play in morphological change. The results presented here show that genetic constraints can significantly reduce the evolutionary potential of the birth canal to evolve in humans, apes, and likely earlier hominins, but also point to an overall reduction in the level of constraints during hominin evolution. These findings suggest that divergent selection pressures for obstetric requirements and other pelvic functions in hominins reduced levels of genetic constraint on birth canal evolution, likely lowering the amount of time needed for evolutionary change, and permitting morphological evolution along a trajectory that might have previously been difficult or impossible to traverse.     

Constraints in naming parts of the Tree of Life

There are now overlapping codes of nomenclature that govern some of the same names of biological taxa. The International Code of Zoological Nomenclature (ICZN) uses the non-evolutionary concept of a "type species" to fix the names of animal taxa to particular ranks in the nomenclatural hierarchy. The PhyloCode, in contrast, uses phylogenetic definitions for supraspecific taxa at any hierarchical level within the Tree of Life (without associating the names to particular ranks), but does not deal with the names of species. Thus, biologists who develop classifications of animals need to use both systems of nomenclature, or else operate without formal rules for the names of some taxa (either species or many monophyletic groups). In addition, the ICZN does not permit the unique naming of many taxa that are considered to be between the ranks of genus and species. Hillis and Wilcox [Hillis, D.M., Wilcox, T.P., 2005. Phylogeny of the New World true frogs (Rana). Mol. Phylogenet. Evol. 34, 299-314] provided recommendations for the classification of New World true frogs that utilized the ICZN to provide names for species, and the PhyloCode to provide names for supraspecific taxa. Nonetheless, they created new taxon names that followed both sets of rules, to avoid conflicting classifications. They also recommended that established names for both species and clades be used whenever possible, to stabilize the names of both species and clades under either set of rules, and to avoid conflicting nomenclatures. Dubois [Dubois, A., 2006. Naming taxa from cladograms: a cautionary tale. Mol. Phylogenet. Evol., 42, 317-330] objected to these principles, and argued that the names provided by Hillis and Wilcox [Hillis, D.M., Wilcox, T.P., 2005. Phylogeny of the New World true frogs (Rana). Mol. Phylogenet. Evol. 34, 299-314] are unavailable under the ICZN, and that the two nomenclatural systems are incompatible. Here, I argue that he is incorrect in these assertions, and present arguments for retaining the established names of New World true frogs, which are largely compatible under both sets of nomenclatural rules.     

Predicting the Evolution of Sex on Complex Fitness Landscapes

Most population genetic theories on the evolution of sex or recombination are based on fairly restrictive assumptions about the nature of the underlying fitness landscapes. Here we use computer simulations to study the evolution of sex on fitness landscapes with different degrees of complexity and epistasis. We evaluate predictors of the evolution of sex, which are derived from the conditions established in the population genetic literature for the evolution of sex on simpler fitness landscapes. These predictors are based on quantities such as the variance of Hamming distance, mean fitness, additive genetic variance, and epistasis. We show that for complex fitness landscapes all the predictors generally perform poorly. Interestingly, while the simplest predictor, ΔVar_HD, also suffers from a lack of accuracy, it turns out to be the most robust across different types of fitness landscapes. ΔVar_HD is based on the change in Hamming distance variance induced by recombination and thus does not require individual fitness measurements. The presence of loci that are not under selection can, however, severely diminish predictor accuracy. Our study thus highlights the difficulty of establishing reliable criteria for the evolution of sex on complex fitness landscapes and illustrates the challenge for both theoretical and experimental research on the origin and maintenance of sexual reproduction.     

Hormonal Mechanisms as Potential Constraints on Evolution: Examples from the Anura

Developmental constraints are limitations on phenotypic variabilityresulting from developmental mechanisms that produce biasesin phenotypic variants and hence evolution. These constraintsultimately limit the available phenotypes on which selectioncan act. Because hormones play important roles in many developmentalprocesses, there is a great potential for hormonal mechanismsto produce (or act as) developmental constraints. In the currentstudy, I present two examples to show how hormones may producedevelopmental constraints on evolution in the Anura. One example(a universal constraint in the Anura), examines evidence thatthyroid hormones are required for sex differentiation and reproductionin frogs. The thyroid hormone requirement for these processesmay prevent the evolution of neoteny in anurans. The secondexample (a local constraint) examines the mechanisms underlyingsexual dichromatism in the genus Hyperolius (Hyperoliidae) andshows how the evolution of sexual dichromatism is limited bythe hormonal mechanisms regulating pigmentation     

Constraints on the Evolution of Reciprocity: An Experimental Test with Zebra Finches

Reciprocity is apparently uncommon in animal societies because it requires, to evolve, specialized cognitive abilities that most species would not possess. In particular, memory would be important because cooperation can emerge and be maintained only if the same opponents interact repeatedly and adjust their decisions to their opponent’s previous move. To investigate how these constraints influence reciprocity, we first conducted a preliminary foraging experiment with zebra finches (Taeniapygia guttata) to insure that corticosterone elevations impaired the birds’ event memory capabilities. Then, we performed a reciprocity experiment with established pairs that were tested in a two‐choice apparatus under two different conditions: once with an empty implant and once with an implant of corticosterone. We found that the birds were capable of sustained cooperation in the Prisoner’s Dilemma treatment but only when they had an empty implant. Thus, our results support the hypothesis that limitations in event memory constraint the frequency of reciprocity and hence would make this form of cooperation difficult for non‐human animals. In addition, as levels of stress hormones can differ greatly among individuals, our findings might also contribute explaining individual variation in the propensity to cooperate.     

The Evolution of Complex Organs

The origin of complex biological structures has long been a subject of interest and debate. Two centuries ago, natural explanations for their occurrence were considered inconceivable. However, 150 years of scientific investigation have yielded a conceptual framework, abundant data, and a range of analytical tools capable of addressing this question. This article reviews the various direct and indirect evolutionary processes that contribute to the origins of complex organs. The evolution of eyes is used as a case study to illustrate these concepts, and several of the most common misconceptions about complex organ evolution are discussed.

Bioenergetic Aspects of Halophilism

Examinination of microbial diversity in environments of increasing salt concentrations indicates that certain types of dissimilatory metabolism do not occur at the highest salinities. Examples are methanogenesis for H₂ + CO₂ or from acetate, dissimilatory sulfate reduction with oxidation of acetate, and autotrophic nitrification. Occurrence of the different metabolic types is correlated with the free-energy change associated with the dissimilatory reactions. Life at high salt concentrations is energetically expensive. Most bacteria and also the methanogenic archaea produce high intracellular concentrations of organic osmotic solutes at a high energetic cost. All halophilic microorganisms expend large amounts of energy to maintain steep gradients of NA⁺ and K⁺ concentrations across their cytoplasmic membrane. The energetic cost of salt adaptation probably dictates what types of metabolism can support life at the highest salt concentrations. Use of KCl as an intracellular solute, while requiring far-reaching adaptations of the intracellular machinery, is energetically more favorable than production of organic-compatible solutes. This may explain why the anaerobic halophilic fermentative bacteria (order Haloanaerobiales) use this strategy and also why halophilic homoacetogenic bacteria that produce acetate from H₂ + CO₂ exist whereas methanogens that use the same substrates in a reaction with a similar free-energy yield do not.     

Evolution of Rotifer Life Histories

When compared to most other multicellular animals, rotifers are all relatively small, short-lived and fast-reproducing organisms. However among and within different rotifer species there is a large variation in life history patterns. This review accounts for such variation in rotifers, with a strong focus on monogonont rotifers. As the life cycle of monogonont rotifers involves both asexual and sexual reproduction, life history patterns can be examined on the level of the genetic individual, which includes all asexual females, sexual females and males that originated from one resting egg. This concept has been applied successfully in many areas, for example in predicting optimal levels of mictic reproduction or sex allocation theory. The benefits and implications of the view of the genetic individual are discussed in detail. Rotifer life histories can also be viewed on the level of physiological individuals. A large part of this review deals with the life histories of individual amictic females and addresses life history traits like body size, egg size and resource allocation patterns. It asks which trade-offs exist among those traits, how these traits change under the influence of environmental factors like food availability or temperature, and whether these changes can be interpreted as adaptive.     

Multi-trait Selection, Adaptation, and Constraints on the Evolution of Burst Swimming Performance

Whole organism performance represents the integration of numerousphysiological, morphological, and behavioral traits. How adaptivechanges in performance evolve therefore requires an understandingof how selection acts on multiple integrated traits. Two approachesthat lend themselves to studying the evolution of performancein natural populations are the use of quantitative geneticsmodels for estimating the strength of selection acting on multiplequantitative traits and ecological genetic comparisons of populationsexhibiting phenotypic differences correlated with environmentalvariation. In both cases, the ultimate goal is to understandhow suites of traits and trade-offs between competing functionsrespond to natural selection. Here we consider how these twocomplimentary approaches can be applied to study the adaptiveevolution of escape performance in fish. We first present anextension of Arnold's (1983) quantitative genetic approach thatexplicitly considers how trade-offs between different componentsof performance interact with the underlying genetics. We proposethat such a model can reveal the conditions under which multipleselection pressures will cause adaptive change in traits thatinfluence more than one component of fitness. We then reviewwork on the Atlantic silversides and Trinidadian guppies astwo case studies where an ecological genetics approach has beensuccessfully applied to evaluate how the evolution of escapeperformance trades-off with other components of fitness. Weconclude with the general lesson that whole organism performanceis embedded in a complex phenotype, and that the net outcomeof selection acting on different aspects of the organism willoften result in a compromise among competing influences.     

Complex Adaptive Systems and the Evolution of Reciprocation

Complex adaptive systems play a major role in the theory of reciprocal altruism. Starting with Axelrod's celebrated computer tournaments, a wide variety of computer simulations show that cooperation can evolve in populations of selfish agents, both with direct and indirect reciprocation. Received 14 April 1998; accepted 16 June 1998.     

Evolutionary Developmental Biology and Human Language Evolution: Constraints on Adaptation

A tension has long existed between those biologists who emphasize the importance of adaptation by natural selection and those who highlight the role of phylogenetic and developmental constraints on organismal form and function. This contrast has been particularly noticeable in recent debates concerning the evolution of human language. Darwin himself acknowledged the existence and importance of both of these, and a long line of biologists have followed him in seeing, in the concept of ??descent with modification??, a framework naturally able to incorporate both adaptation and constraint. Today, the integrated perspective of modern evolutionary developmental biology (??evo-devo??) allows a more subtle and pluralistic approach to these traditional questions, and has provided several examples where the traditional notion of ??constraint?? can be cashed out in specific, mechanistic terms. This integrated viewpoint is particularly relevant to the evolution of the multiple mechanisms underlying human language, because of the short time available for novel aspects of these mechanisms to evolve and be optimized. Comparative data indicate that many cognitive aspects of human language predate humans, suggesting that pre-adaptation and exaptation have played important roles in language evolution. Thus, substantial components of what many linguists call ??Universal Grammar?? predate language itself. However, at least some of these older mechanisms have been combined in ways that generate true novelty. I suggest that we can insightfully exploit major steps forward in our understanding of evolution and development, to gain a richer understanding of the principles that underlie human language evolution.     

Evolution of Complex Density-Dependent Dispersal Strategies

The question of how dispersal behavior is adaptive and how it responds to changes in selection pressure is more relevant than ever, as anthropogenic habitat alteration and climate change accelerate around the world. In metapopulation models where local populations are large, and thus local population size is measured in densities, density-dependent dispersal is expected to evolve to a single-threshold strategy, in which individuals stay in patches with local population density smaller than a threshold value and move immediately away from patches with local population density larger than the threshold. Fragmentation tends to convert continuous populations into metapopulations and also to decrease local population sizes. Therefore we analyze a metapopulation model, where each patch can support only a relatively small local population and thus experience demographic stochasticity. We investigated the evolution of density-dependent dispersal, emigration and immigration, in two scenarios: adult and natal dispersal. We show that density-dependent emigration can also evolve to a nonmonotone, “triple-threshold” strategy. This interesting phenomenon results from an interplay between the direct and indirect benefits of dispersal and the costs of dispersal. We also found that, compared to juveniles, dispersing adults may benefit more from density-dependent vs. density-independent dispersal strategies.