Macrozoobenthos of the Small Aral Sea

Benthic assemblages of the Small Aral Sea were studied in 1999. The species composition, density, and biomass of benthic invertebrates were determined. The vertical distribution pattern and its dynamics in the course of desiccation of the sea were analyzed. It is shown that the vertical distribution of the benthos has changed substantially over the last 30 years. The biomass of the benthos in the inshore zone increased, while in the central part of the sea, benthic invertebrate populations declined and gradually disappeared. These changes are likely to be due to the accumulation of organic matter in the bottom sediments and the weakening of hydrodynamic processes, which could lead to oxygen depletion in deep water. In the 1990s, the benthic assemblages of the Small Aral Sea were relatively stable and highly productive. It is concluded that the Aral Sea is a promising area for fishery restoration.     

Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America

The frequency of the Beijing genotype of Mycobacterium tuberculosis as a cause of tuberculosis (TB) in South America was determined by analyzing genotypes of strains isolated from patients that had been diagnosed with the disease between 1997 and 2003 in seven countries of the subcontinent. In total, 19 of the 1,202 (1.6%) TB cases carried Beijing isolates, including 11 of the 185 patients from Peru (5.9%), five of the 512 patients from Argentina (1.0%), two of the 252 Brazilian cases (0.8%), one of the 166 patients from Paraguay (0.6%) and none of the samples obtained from Chile (35), Colombia (36) and Ecuador (16). Except for two patients that were East Asian immigrants, all cases with Beijing strains were native South Americans. No association was found between carrying a strain with the Beijing genotype and having drug or multi-drug resistant disease. Our data show that presently transmission of M. tuberculosis strains of the Beijing genotype is not frequent in Latin America. In addition, the lack of association of drug resistant TB and infection with M. tuberculosis of the Beijing genotype observed presently demands efforts to define better the contribution of the virulence and lack of response to treatment to the growing spread of Beijing strains observed in other parts of the world.     

结核分枝杆菌北京基因型菌株流行的可能机制

北京基因型菌株是结核分枝杆菌的一个进化支,通过分子流行病学、实验和临床研究调查,基于其传播和引起疾病能力的增强及遗传同质性,可能比其他结核分枝杆菌菌株更有选择性优势。不同的细胞实验和动物模型证明,相比其他基因型菌株,北京基因型菌株毒力更强,引起更严重的组织病理学改变,加速疾病的进程同时增加死亡率,抑制宿主免疫反应。文献报道显示,北京基因型菌株具有独特的基因型,其超毒力可以通过与宿主免疫系统的相互作用来说明。本文综述近年北京基因型菌株流行及菌株毒力方面的研究成果。     

Emerging multidrug resistant Mycobacterium tuberculosis strains of the Beijing genotype circulating in Russia express a pattern of biological properties associated with enhanced virulence

The epidemiologically important Mycobacterium tuberculosis Beijing genotype strains, highly endemic in East Asia, have become an emerging infection in certain geographic areas, including Russia, because of its increasing prevalence and association with multidrug resistance (MDR). The aim was to verify whether MDR Beijing strains circulating in the emerging regions present some biological particularities that could contribute to their success in causing disease in comparison with the sporadic strains from locations with low prevalence of the Beijing genotype. We evaluated virulence-associated characteristics of the MDR Beijing strains isolated in Russia and compared them with those of the drug-resistant and susceptible Beijing strains from Brazil and reference H37Rv strain. We found that Russian MDR strains demonstrated an increased bacterial fitness and growth in THP-1 macrophage-like cells, as well as a higher capacity to induce non-protective cytokine synthesis and necrotic macrophage death. By contrast, the biological properties of the strains isolated in Brazil largely resembled those of the H37Rv strain, with the exception of the drug-resistant isolates that presented significantly reduced fitness. The data demonstrate that the emerging MDR strains of the Beijing genotype circulating in Russia do express a pattern of properties associated with the enhanced virulence favouring its clonal dissemination in this region.     

Complete mitochondrial control region sequences indicate a distinct variety of brown trout Salmo trutta in the Aral Sea

Complete sequencing of the mtDNA control region (CR) from five specimens of brown trout Salmo trutta from the Amu Darya River identified two novel haplotypes belonging to the Danubian lineage. This finding supports the long-standing hypothesis that brown trout in the Aral Sea represent a distinct genetic stock and also illustrates the benefits that complete sequencing of the CR can provide for elucidating phylogeographic relationships.     

The pelican scenario for nature restoration of Aral Sea wetland ecosystems

Sustainability of the wetland ecosystems in the Aral Sea region depends on the ecological dynamic processes resulting from shifting mosaic patterns along the ecotone. The Pelican Scenario, a natural dynamism-oriented nature restoration plan for the Aral Sea crisis, should be considered not only for achieving sustainable land use, but also for the conservation of Pelecanus crispus, a vulnerable species.An erratum to this article can be found at This revised version was published online in April 2005 with correction to the Revised date.     

A genome-wide analysis of multidrug-resistant and extensively drug-resistant strains of Mycobacterium tuberculosis Beijing genotype

The Beijing genotype of Mycobacterium tuberculosis (MTB) is one of the most successful MTB lineages that has disseminated in the world. In China, the rate of multidrug-resistant (MDR) tuberculosis is significantly higher than the global average rate, and the Beijing genotype strains take the largest share of MDR strains. To study the genetic basis of the epidemiological findings that Beijing genotype has often been associated with tuberculosis outbreaks and drug resistance, we determined the genome sequences of four clinical isolates: two extensively drug resistant (XDR1219, XDR1221) and two multidrug resistant (WX1, WX3), using whole-genome sequencing. A large number of individual and shared SNPs of the four Beijing strains were identified. Our isolates harbored almost all classic drug resistance-associated mutations. The mutations responsible for drug resistance in the two XDR strains were consistent with the clinical quantitative drug resistance levels. COG analysis revealed that Beijing strains have significantly higher abundances of the mutations responsible for cell wall/membrane/envelope biogenesis (COG M), secondary metabolites biosynthesis, transport and catabolism (COG Q), lipid transport and metabolism (COG I) and defense mechanisms (COG V). The shared mutated genes of the four studied Beijing strains were significantly overrepresented in three DNA repair pathways. Our analyses promote the understanding of the genome polymorphism of the Beijing family strains and provide the molecular genetic basis for their wide dissemination capacity and drug resistance.     

Impact of drug resistance on fitness of Mycobacterium tuberculosis strains of the W-Beijing genotype

Mycobacterium tuberculosis strains of the W-Beijing genotype became a common cause of tuberculosis during the past years and they are often associated with drug resistance. The biological factors facilitating the selection and wide dissemination of these strains are not known. To determine how acquisition of drug resistance affected growth of strains of the W-Beijing genotype, the growth of 55 M. tuberculosis isolates were studied using the BBL MGIT Mycobacteria Growth Indicator Tube and the BACTEC MGIT 960 System. Susceptible strains of non-Beijing genotypes were found to be the most fit strains. Drug-resistant strains of non-Beijing genotypes were more likely to grow slower than susceptible strains (P=0.001). Drug-resistant strains of the W-Beijing genotype had two tendencies of growth: some of them showed reduced growth compared to susceptible strains, while others did not show loss of fitness measured as growth.     

结核分枝杆菌及其L型耐药机制与茜草素作用的研究进展

结核分枝杆菌的细菌型与L型(细胞壁缺陷型)的耐药,尤其是多重耐药和泛耐药现象对现有的临床抗结核治疗提出了严峻挑战.本文对结核分枝杆菌细菌型和L型耐药机制,以及中草药茜草素的抗菌作用进行了分析,以期建立有效的抗结核治疗方法,提高临床抗结核治疗水平.     

乌体林斯联合化疗治疗耐多药肺结核疗效观察

目的探讨乌体林斯联合化疗治疗耐多药肺结核（MDR-TB）疗效。方法将146例耐多药肺结核患者随机分为乌体林斯加化疗的治疔组（76例）和仅用化疗的对照组（70例）。治疗组采用左氧氟沙星＋吡嗪酰胺＋乙胺丁醇＋利福喷丁＋异烟肼及乌体林斯1.72μg/m l深部肌注,每周2次;对照组单纯用左氧氟沙星＋吡嗪酰胺＋乙胺丁醇＋利福喷丁＋异烟肼方案治疗,疗程均为18个月。结果治疗6个月、12个月、18个月后,治疗组涂阳阴转率分别为67%、82%、92%,对照组涂阳阴转率分别为34%、44%、51%,痰菌阴转率治疗组显著高于对照组（P〈0.05）组。治疗组病灶吸收显著高于对照组。结论乌体林斯能增加肺结核患者的痰菌阴转率,促进病灶吸收好转,可以作为耐药性肺结核的辅助治疗。     

Changes in the Aral Sea ecosystems during the period 1960–1990

Salt and water balance in the Aral Sea are described together with the endemic fauna and flora which were mainly of freshwater origin. During the last thirty years the fauna and flora have undergone dramatic changes due partly to a great increase in salinity as the result of water abstraction from the inflowing rivers and partly as the result of the deliberate and accidental introduction of a wide variety of marine invertebrates and fishes. The increased salinity has eliminated most the species of freshwater origin while many of endemic saline species have been lost as the result of competition with the marine ones. Changes in productivity are described and future prospects for the sea are discussed.     

Genetic structure of people from the Volga-Ural region and Central Asia from data of Alu-polymorphism

Nine Alu loci (Ya5NBC5, Ya5NBC27, Ya5NBC148, Ya5NBC182, YA5NBC361, ACE, ApoA1, PV92, TPA25) were analyzed in six ethnic populations (Trans-Ural Bashkirs, Tatars-Mishars, Mordovians-Moksha, Mountain Maris, Udmurts, and Komi-Permyaks) of the Volga-Ural region and in three Central Asian populations (Uzbeks, Kazakhs, and Uigurs). All Alu insertions analyzed appeared to be polymorphic in all populations examined. The frequency of insertion varied from 0.110 in Mountain Maris at the Ya5NBC5 locus to 0.914 in Tatars at the ApoA1 locus. The data on the allele frequency distribution at nine loci point to the existence of substantial genetic diversity in the populations examined. The value of the observed heterozygosity averaged over nine Alu insertions varied from 0.326 in Mountain Maris to 0.445 in Kazakhs and Uigurs. The level of the interpopulation genetic differences for the Volga-Ural population (Fst = 0.061) was higher than for the populations of Central Asia (Fst = 0.024), Europe (Fst = 0.02), and Southeastern Asia (Fst = 0.018). The populations examined were highly differentiated both in respect of linguistic characteristics and the geographical position. The data obtained confirmed the effectiveness of the marker system used for the assessment of genetic differentiation and the relationships between the ethnic groups.     

The MODS method for diagnosis of tuberculosis and multidrug resistant tuberculosis

Patients with active pulmonary tuberculosis (TB) infect 10-15 other persons per year, making diagnosing active TB essential to both curing the patient and preventing new infections. Furthermore, the emergence of multidrug resistant tuberculosis (MDRTB) means that detection of drug resistance is necessary for stopping the spread of drug-resistant strains. The microscopic-observation drug-susceptibility (MODS) assay is a low-cost, low-tech tool for high-performance detection of TB and MDRTB. The MODS assay is based on three principles: 1) mycobacterium tuberculosis (MTB) grows faster in liquid media than on solid media 2) microscopic MTB growth can be detected earlier in liquid media than waiting for the macroscopic appearance of colonies on solid media, and that growth is characteristic of MTB, allowing it to be distinguished from atypical mycobacteria or fungal or bacterial contamination 3) the drugs isoniazid and rifampicin can be incorporated into the MODS assay to allow for simultaneous direct detection of MDRTB, obviating the need for subculture to perform an indirect drug susceptibility test. Competing current diagnostics are hampered by low sensitivity with sputum smear, long delays until diagnosis with solid media culture, prohibitively high cost with existing liquid media culture methods, and the need to do subculture for indirect drug susceptibility testing to detect MDRTB. In contrast, the non-proprietary MODS method has a high sensitivity for TB and MDRTB, is a relatively rapid culture method, provides simultaneous drug susceptibility testing for MDRTB, and is accessible to resource-limited settings at just under $3 for testing for TB and MDRTB.Download video file.^{(243M, mp4)}