Relationship between freshwater angling catch of Atlantic salmon and stock size in the River Bush, Northern Ireland

Over 25 years rod catches of Atlantic salmon Salmo salar increased proportionately as stock size increased ( r ²=0·581, P <0·001), with no overall trend between exploitation rate and stock size ( r ²=0·016, P >0·5). On a 15 year sub-set of these data annual effort ( P =0·804) and flow ( P =0·339) had little significance relative to stock size ( P <0·01) on variation in rod catches. Stock size, time, effort and flows had no influence on inter-annual variation of rod exploitation rate ( r ²=0·094, P =0·880). Pairwise correlation between variables confirmed these results. In 1998, weekly effort contributed significantly to overall catch variation ( P <0·001), while weekly flow did not ( P =0·438). These results are discussed in relation to the utility of rod catch data for deriving estimates of stock for spawning target compliance purposes.     

A study of temporal genetic variation in a natural population of Atlantic salmon in the River Bush, Northern Ireland

Temporal genetic variation in River Bush Atlantic salmon was low and much less than among geographically discrete samples reported from elsewhere.     

The survival of semi‐wild, wild and hatchery‐reared Atlantic salmon smolts of the Simojoki River in the Baltic Sea

The recapture rate and survival of hatchery‐reared Atlantic salmon Salmo salar stocked as 1 year‐old parr (semi‐wild) with that of hatchery‐reared Atlantic salmon stocked as 2 year‐old smolts and wild smolts of Atlantic salmon in the northern Baltic Sea were compared. This was done through tagging experiments carried out in 1986–1988 and 1992. The recapture rate of the semi‐wild groups varied from 1·0 to 13·1%, being similar in 3 tagging years and lower in 1 year than that of the wild groups (1·7–17·0%). The recapture rate of the semi‐wild groups was similar (in 2 years) or higher (in 2 years) than that of the hatchery‐reared groups stocked as smolts (1·3–6·3%). The survival of semi‐wild smolts during the sea migration was as high as that of wild Atlantic salmon of an equal size and two to three times higher than hatchery‐reared Atlantic salmon stocked as smolts. The survival rate was positively associated with smolt size. The suitability of hatchery‐reared parr and smolts in the management of reduced Atlantic salmon stocks is compared.     

Application of a fry (0+;) abundance index, based on semi-quantitative electrofishing, to predict Atlantic salmon smolt runs in the River Bush, Northern Ireland

An abundance index for 0+ Atlantic salmon was based on semi-quantitative electrofishing estimates at 137 sites in typical juvenile habitat throughout the River Bush (N. Ireland). 0 + abundance was linearly related to total smolt numbers migrating through a downstream trap in subsequent years ( r ²= 0.716, P <0.001), suggesting a high degree of predictive ability. This predictive ability decreased as smolt age increased, suggesting influence of density-independent mortality. Potential application of the technique to estimate smolt production from rivers having no trapping facilities is discussed, together with sources of variability potentially affecting estimates.     

Demographics and landscape features determine intrariver population structure in Atlantic salmon (Salmo salar L.): the case of the River Moy in Ireland

Contemporary genetic structure of Atlantic salmon (Salmo salar L.) in the River Moy in Ireland is shown here to be strongly related to landscape features and population demographics, with populations being defined largely by their degree of physical isolation and their size. Samples of juvenile salmon were collected from the 17 major spawning areas on the river Moy and from one spawning area in each of five smaller nearby rivers. No temporal allele frequency differences were observed within locations for 12 microsatellite loci, whereas nearly all spatial samples differed significantly, suggesting that each was a separate population. Bayesian clustering and landscape genetic analyses suggest that these populations can be combined hierarchically into five genetically informative larger groupings. Lakes were found to be the single most important determinant of the observed population structure. Spawning area size was also an important factor. The salmon population of the closest nearby river resembled genetically the largest Moy population grouping. In addition, we showed that anthropogenic influences on spawning habitats, in this case arterial drainage, can affect relationships between populations. Our results show that Atlantic salmon biodiversity can be largely defined by geography, and thus, knowledge of landscape features (for example, as characterized within Geographical Information Systems) has the potential to predict population structure in other rivers without an intensive genetic survey, or at least to help direct sampling. This approach of combining genetics and geography, for sampling and in subsequent statistical analyses, has wider application to the investigation of population structure in other freshwater/anadromous fish species and possibly in marine fish and other organisms.     

Complex pattern of genetic structuring in the Atlantic salmon (Salmo salar L.) of the River Foyle system in northwest Ireland: disentangling the evolutionary signal from population stochasticity

Little is known about the microevolutionary processes shaping within river population genetic structure of aquatic organisms characterized by high levels of homing and spawning site fidelity. Using a microsatellite panel, we observed complex and highly significant levels of intrariver population genetic substructure and Isolation-by-Distance, in the Atlantic salmon stock of a large river system. Two evolutionary models have been considered explaining mechanisms promoting genetic substructuring in Atlantic salmon, the member-vagrant and metapopulation models. We show that both models can be simultaneously used to explain patterns and levels of population structuring within the Foyle system. We show that anthropogenic factors have had a large influence on contemporary population structure observed. In an analytical development, we found that the frequently used estimator of genetic differentiation, F(ST), routinely underestimated genetic differentiation by a factor three to four compared to the equivalent statistic Jost's D(est) (Jost 2008). These statistics also showed a near-perfect correlation. Despite ongoing discussions regarding the usefulness of "adjusted"F(ST) statistics, we argue that these could be useful to identify and quantify qualitative differences between populations, which are important from management and conservation perspectives as an indicator of existence of biologically significant variation among tributary populations or a warning of critical environmental damage.     

Importance of ontogenetic habitat shifts to juvenile output and life history of Atlantic salmon in a large subarctic river: an approach based on analysis of scale characteristics

Juvenile and adult scale characteristics were used to compare two juvenile groups of Atlantic salmon in a large subarctic river in northern Scandinavia: individuals that have migrated from the main stem into small tributaries and those which remain in the main stem. Body size and scale measurements indicated enhanced growth in migratory parr as compared to their resident main stem counterparts. Analysis of adult salmon scale characteristics using maximum likelihood estimators revealed that 20% of the adults had been in the tributaries before the end of their second year of life, and more than 30% more had moved into the tributaries in the third year. Tributary fish matured at a smaller size and younger age (one-sea-winter salmon) than those rearing in the main stem which included a higher proportion of multi-sea-winter salmon. In addition, when smolt ages and ages at maturity were compared, older female smolts often resulted in smaller spawners and younger smolts, larger spawners. Small female spawners were more likely to survive to become repeat spawners.     

The relationship between a summer fry (0+) abundance index, derived from semi-quantitative electrofishing, and egg deposition of Atlantic salmon, in the River Bush, Northern Ireland

Atlantic salmon survival in the R. Bush (N. Ireland) from egg to summer 0+ was inversely density-dependent on egg deposition ( P <0.05). A stock-recruitment relationship derived from egg deposition and summer 0+ abundance index data was compared to that derived from adult and smolt counts based on total trapping. Fitted Ricker curves indicated maximum recruitment at around 2.35 million eggs and 2.46 million eggs for 0+ index and smolt count methods, respectively. Salmon 0+ abundance index data from semi-quantitative electrofishing could be obtained with relatively little effort, and used to derive whole-river stock-recruitment relationships on rivers where only adult count or some other estimator of parental stock is available. The derivation and expression of spawning targets from stock/recruitment relationships is discussed with reference to the R. Bush data.     

Association between environmental factors, smolt size and the survival of wild and reared Atlantic salmon from the Simojoki River in the Baltic Sea

The survival of Atlantic salmon Salmo salar in the Baltic Sea was examined in relation to smolt traits (length and origin) and annual environmental factors [sea surface temperature (SST) and seasonal North Atlantic Oscillation (NAO) index], and prey fish abundance (herring Clupea harengus and sprat Sprattus sprattus) in the main basin and the southern Gulf of Bothnia. The study was based on recapture data for Carlin‐tagged hatchery‐reared and wild smolts from the Simojoki, a river flowing into the northern Gulf of Bothnia. The survival of the wild and reared groups was analysed using an ANOVA model and a stepwise regression model, with the arcsin‐transformed proportion of recaptured fish as the response variable. The results demonstrated a combined influence of smolt traits and environmental factors on survival. For the reared Atlantic salmon released in 1986–1998 (28 groups), the increasing annual mean SST in July in the southern Gulf of Bothnia and increasing mean smolt size improved survival. If the SST in July was excluded from the model, the NAO index in May to July also had a positive effect on survival (P < 0·10). The log₁₀‐transformed abundance of 0+ year herring in the southern Gulf of Bothnia entered the model (P < 0·15) if the SST and NAO index were excluded. For the wild Atlantic salmon released in 1972–1993 (21 groups), only the increasing SST in July showed a significant association with improved survival (P = 0·004). Prey fish abundance in the main basin of the Baltic Sea had no influence on the survival of reared or wild smolt groups. The interaction between smolt size and the SST in July was not significant. The origin was a better, but not a significant, predictor of marine survival compared to the smolt size or the SST in July. The mean recapture rate of the wild groups was twice that of the reared groups in the whole data. The results suggest that cold summers in the Gulf of Bothnia reduce the survival of young Atlantic salmon in both wild and reared groups. The larger smolt size of the reared groups compared with the wild groups to some extent compensated for their lower ability to live in the wild.     

The effect of stocking with 0+ year age‐class Atlantic salmon Salmo salar fry: a case study from the River Bush,Northern Ireland

An enhancement programme based on stocking 0+ year age‐class Atlantic salmon Salmo salar, conducted in the River Bush, Northern Ireland, U.K. over the period 1996–2005, was reviewed with reference to the performance and biological characteristics of wild fish. Wild ova to 0+ year fry (summer) survival was c. 8% with subsequent wild 0+ year fry‐to‐smolt survival c. 9%. Stocked unfed 0+ year juveniles gave c. 1% survival to smolt whilst fed 0+ year S. salar stocked in late summer exhibited survival at c. 5%. Stocking with unfed and fed fry contributed to increased smolt production and helped attain local management objectives between 2001 and 2005. Significant differences in biological characteristics were observed between wild and stocked‐origin fish. Wild‐smolt cohorts were dominated by 2+ year age‐class fish on the River Bush whilst smolts originating from fed fry mostly comprised younger 1+ year individuals. The mean mass of 1+ year smolts derived from stocked fed fry was significantly lower than that of wild 1+ year smolts, although these differences were not evident between older age classes. Differences in run timing between wild smolts and smolts derived from stocked fry were also apparent with the stocked‐origin fish tending to run earlier than wild fish. Although the stocking exercise was useful in terms of maximizing freshwater production, concerns over the quality of stocked‐origin recruits and the long term consequences for productivity are highlighted.