Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition

Plant roots select non‐random communities of fungi and bacteria from the surrounding soil that have effects on their health and growth, but we know little about the factors influencing their composition. We profiled bacterial microbiomes associated with individual ectomycorrhizal Pinus sylvestris roots colonized by different fungi and analyzed differences in microbiome structure related to soils from distinct podzol horizons and effects of short‐term additions of N, a growth‐limiting nutrient commonly applied as a fertilizer, but known to influence patterns of carbon allocation to roots. Ectomycorrhizal roots growing in soil from different horizons harboured distinct bacterial communities. The fungi colonizing individual roots had a strong effect on the associated bacterial communities. Even closely related species within the same ectomycorrhizal genus had distinct bacterial microbiomes in unfertilized soil, but fertilization removed this specificity. Effects of N were rapid and context dependent, being influenced by both soil type and the particular ectomycorrhizal fungi involved. Fungal community composition changed in soil from all horizons, but bacteria only responded strongly to N in soil from the B horizon where community structure was different and bacterial diversity was significantly reduced, possibly reflecting changed carbon allocation patterns.     

Influence of soil thickness on stand characteristics in a Sierra Nevada mixed-conifer forest

Soil thickness can be an important factor influencing vegetation, yet few spatially-explicit studies have examined soil horizon thickness and vegetation composition in summer-drought forests. We compared seismic and soil penetration measurements of combined A + C and Cr horizon thickness, soil moisture and temperature, and stand variables in a contiguous 4-ha mixed-conifer stand of the Sierra Nevada. Thickness of A + C and Cr horizons were highly variable but were not correlated to each other. Total basal area and canopy cover were positively related with A + C horizon thickness, and shrub cover was positively related with Cr horizon thickness. Basal area of white fir [Abies concolor (Gord and Glend) Lindl.] and incense-cedar [Calocedrus decurrens (Torrey) Florin] were positively correlated with A + C horizon thickness, but there was no relationship between A + C or Cr horizon thickness and basal area of Jeffrey pine (Pinus jeffreyi Grev. and Balf.), sugar pine (P. lambertiana Douglas), or red fir (A. magnifica A. Murray). Both white and red fir seedlings were associated with decreased soil temperature, but only white fir seedlings were positively associated with soil moisture. Soil penetration estimates of soil thickness were similar to seismic estimates for shallow soils (<50 cm depth) but were poorly related on deeper soils. Visual surface conditions and tile probe estimates of soil thickness can be highly misleading because ‘shallow’ areas may have a thick layer of weathered bedrock that can serve as a potential rooting medium for deep-rooted trees and shrubs. In our study only the refraction seismic method had the potential to measure total soil depth that included A + C and Cr horizon thickness.     

Microbial communities ofPyrenophora-infested wheat straw as examined by multivariate analysis

Winter wheat straw naturally infested withPyrenophora triticirepentis andSeptoria nodorum was incubated in the field in one of three placements: buried in the soil, placed directly on the soil surface, or placed 2 cm above the soil within a straw layer. Periodically between June and April, straws from each treatment were collected and assayed by dilution plating to determine microbial populations in the following categories: total yeasts, total actinomycetes, total other bacteria, and genera or species of fungi. The data were analyzed by the multivariate procedures of ordination and classification, using detrended correspondence analysis (DCA) and cluster analysis, respectively. The major DCA axis displayed a gradient starting with pioneer colonizer communities of above-soil straw (dominated byPyrenophora, Septoria, Alternaria, andCladosporium), through on-soil straws (colonized by secondary saprophytes such asAcremonium strictum, Diplodia, Fusarium, and bacteria) to buried straws (dominated by actinomycetes, bacteria, and soil-inhabiting fungi). The second DCA axis showed a gradient separating different types of late secondary communities. In vitro tests for degradative abilities of straw-inhabiting organisms showed that low-temperature cellulolysis is characteristic of pioneer and early secondary colonizers, whereas chitin degradation is limited to secondary colonizers, particularly soil inhabitants. The results suggest the vulnerability ofPyrenophora andSeptoria to displacement by secondary colonists in an active microbial community, and indicate a number of organisms that may be useful in biological control of these plant parasites through exploitative or interference competition in plant residues.     

川西亚高山三种天然次生林土壤微生物多样性变化特征

开展川西亚高山相似土壤母质背景下天然次生林土壤微生物群落结构及其多样性探究,可加深次生林更新过程中土壤微生物群落结构变化的认知。选取川西米亚罗林区20世纪60年代采伐后经自然更新恢复形成的3种天然次生林（槭-桦阔叶林,ABB;桦-槭-冷杉针阔混交林,BAA;岷江冷杉林,AFF）,分析林下表层（0-20 cm）土壤微生物群落结构变化及其影响因素,结果显示：（1）3种林型土壤细菌Chao1和Shannon指数均极显著高于真菌,但仅真菌群落的Shannon指数差异显著,表现为BAA > ABB > AFF;（2）细菌群落优势门主要为变形杆菌门、酸杆菌门、疣微菌门、拟杆菌门、绿弯菌门,相对丰度占比超过82%;真菌群落则为子囊菌门和担子菌门,占比超过85%,AFF担子菌门相对丰度最高而子囊菌门最低。（3） RDA分析显示,土壤pH和乔木物种多样性（Shannon指数）是影响微生物群落结构变化的主导因子;土壤养分元素对细菌群落影响不显著,真菌群落主要受TN、TP含量显著影响。总体上,林型间乔木层物种多样性、土壤酸碱度及其氮磷含量是导致微生物群落结构变化的关键因素。     

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

Early community assembly of soil microbial communities is essential for pedogenesis and development of organic legacies. We examined fungal and bacterial successions along a well‐established temperate glacier forefront chronosequence representing ~70 years of deglaciation to determine community assembly. As microbial communities may be heavily structured by establishing vegetation, we included nonvegetated soils as well as soils from underneath four plant species with differing mycorrhizal ecologies (Abies lasiocarpa, ectomycorrhizal; Luetkea pectinata, arbuscular mycorrhizal; Phyllodoce empetriformis, ericoid mycorrhizal; Saxifraga ferruginea, nonmycorrhizal). Our main objectives were to contrast fungal and bacterial successional dynamics and community assembly as well as to decouple the effects of plant establishment and time since deglaciation on microbial trajectories using high‐throughput sequencing. Our data indicate that distance from glacier terminus has large effects on biomass accumulation, community membership, and distribution for both fungi and bacteria. Surprisingly, presence of plants rather than their identity was more important in structuring bacterial communities along the chronosequence and played only a very minor role in structuring the fungal communities. Further, our analyses suggest that bacterial communities may converge during assembly supporting determinism, whereas fungal communities show no such patterns. Although fungal communities provided little evidence of convergence in community structure, many taxa were nonrandomly distributed across the glacier foreland; similar taxon‐level responses were observed in bacterial communities. Overall, our data highlight differing drivers for fungal and bacterial trajectories during early primary succession in recently deglaciated soils.     

Comparison of subsurface and surface soil bacterial communities in california grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes

The integrated biomass beneath the surface horizon in unsaturated soils is large and potentially important in nutrient and carbon cycling. Compared to surface soils, the ecology of these subsurface soils is weakly understood, particularly in terms of the composition of bacterial communities. We compared soil bacterial communities along two vertical transects by terminal restriction fragment length polymorphisms (TRFLPs) of PCR-amplified 16S rRNA genes to determine how surface and deep bacterial communities differ. DNA yield from soils collected from two Mediterranean grassland transects decreased exponentially from the surface to 4 m deep. Richness, as assessed by the number of peaks obtained after restriction with HhaI, MspI, RsaI, or HaeIII, and diversity, as assessed by the Shannon diversity indices, were lowest in the deepest sample. Lower diversity at depth is consistent with species-energy theory, which would predict relatively low diversity in the low organic matter horizons. Principal components analysis suggested that, in terms of HhaI and HaeIII generated TRFLPs, bacterial communities differed between depths. The most abundant amplicons cloned from the deepest sample contained sequences with restriction sites consistent with the largest peaks observed in TRFLPs generated from deep samples. These more abundant operational taxonomic units (OTUs) appeared related to Pseudomonas and Variovorax. Several OTUs were more related to each other than any previously described ribotypes. These OTUs showed similarity to bacteria from the divisions Actinobacteria and Firmicutes.     

Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes

Both fungi and bacteria play essential roles in regulating soil carbon cycling. To predict future carbon stability, it is imperative to understand their responses to environmental changes, which is subject to large uncertainty. As current global warming is causing range shifts toward higher latitudes, we conducted three reciprocal soil transplantation experiments over large transects in 2005 to simulate abrupt climate changes. Six years after soil transplantation, fungal biomass of transplanted soils showed a general pattern of changes from donor sites to destination, which were more obvious in bare fallow soils than in maize cropped soils. Strikingly, fungal community compositions were clustered by sites, demonstrating that fungi of transplanted soils acclimatized to the destination environment. Several fungal taxa displayed sharp changes in relative abundance, including Podospora, Chaetomium, Mortierella and Phialemonium. In contrast, bacterial communities remained largely unchanged. Consistent with the important role of fungi in affecting soil carbon cycling, 8.1%–10.0% of fungal genes encoding carbon‐decomposing enzymes were significantly (p < 0.01) increased as compared with those from bacteria (5.7%–8.4%). To explain these observations, we found that fungal occupancy across samples was mainly determined by annual average air temperature and rainfall, whereas bacterial occupancy was more closely related to soil conditions, which remained stable 6 years after soil transplantation. Together, these results demonstrate dissimilar response patterns and resource partitioning between fungi and bacteria, which may have considerable consequences for ecosystem‐scale carbon cycling.     

Field Released Transgenic Papaya Affects Microbial Communities and Enzyme Activities in Soil

Soil properties, microbial communities, and enzyme activities were studied in soil planted with transgenic or nontransgenic papaya under field conditions. The transgenic papaya contained a replicase (RP) mutant gene of the papaya ringspot virus (PRSV), which conferred resistance to the virus, the neomycin phosphotransferase II (NPT II) marker gene, which conferred Km resistance, and a cauliflower mosaic virus 35S promoter (CaMV 35S). There were significant differences (P < 0.05) in the total number of colony forming units (CFUs) of bacteria, actinomycetes, and fungi between soils planted with RP-transgenic and nontransgenic plants; total CFUs of bacteria, actinomycetes, and fungi in soil planted with transgenic papaya were significantly higher by 0.43, 0.80, and 0.46 times, respectively. Significantly higher (P < 0.05) CFUs of bacteria, actinomycetes, and fungi resistant to kanamycin (Km) were present in soils planted with the transgenic papaya than in those planted with nontransgenic papaya. Resistance quotients (CFU in the presence of a chemical relative to that without) of Km-resistant bacteria, actinomycetes and fungi were higher in soil planted with transgenic papaya, and the resistance quotients of Km-resistant bacteria, actinomycetes, and fungi in soils planted with transgenic papaya increased statistically significantly (P<0.05) from 1.5 to 2.5, from 1.2 to 2.6, and from 0.9 to 2.8 times, respectively. Soils planted with transgenic papaya had significantly higher enzyme activities of arylsulfatases (+5.4 times), alkaline phosphatases (+0.5 time), invertase (+0.5 time) and phosphodiesterases (+0.2 time), but lower enzyme activities of proteases (−2.1 times), polyphenol oxidases (−1.4 times), urease (−0.2 time) than the soils planted with nontransgenic papaya. Our results suggest that transgenic papaya could alter chemical properties, enzyme activities, and microbial communities in soil.     

阿尔泰银莲花根际土壤微生物多样性研究

为了解野生和栽培阿尔泰银莲花根际土壤微生物多样性的差异,该研究采用Illumina MiSeq高通量测序技术对野生和栽培阿尔泰银莲花根际土壤微生物的群落组成和多样性进行探究。结果表明:(1)野生阿尔泰银莲花根际土壤的真菌多样性显著高于栽培阿尔泰银莲花(P<0.05),而细菌多样性差异不显著(P>0.05); NMDS分析结果显示,野生和栽培阿尔泰银莲花根际土壤真菌群落结构差异更显著。(2)细菌9 566个可操作分类单元(OTUs)涉及39门127纲315目500科886属,真菌2 670个OTUs涉及15门57纲138目293科597属。在门水平上,细菌群落中的变形菌门、酸杆菌门、放线菌门及真菌群落中的担子菌门、子囊菌门、被孢霉门均为野生和栽培阿尔泰银莲花根际土壤优势菌门,但其相对丰度在不同生长方式下存在差异。(3)环境因子关联分析(RDA)结果显示,土壤有机质是影响土壤细菌群落的主要因子(P<0.05),土壤pH、碱解氮和有效磷是影响真菌群落的主要因子(P<0.05)。综上认为,野生和栽培下的阿尔泰银莲花根际土壤微生物群落组成和多样性存在显著差异,这种差异可能与不同生长条件下的土壤理化性质存在密切的联系,该研究结果对阿尔泰银莲花科学种植以及土壤改良具有一定意义。     

Restoration of Highly Impacted Subalpine Campsites in the Eagle Cap Wilderness, Oregon

The effects of intensive recreation impacts and restoration amendments on soil parameters were assessed at four campsites in the Eagle Cap Wilderness, northeastern Oregon. Sites (2,215‐ to 2,300‐m elevation) are characterized by shallow granitic soils, an Abies lasiocarpa/Pinus albicaulis overstory, and a Vaccinium scoparium understory. In fall 1995, plots were established at four campsites on three subalpine lakes in which soils were scarified, compost amended, and planted to native species. In summer 1998, we sampled surface soils (0–15 cm) on undisturbed sites (between and under vegetation) and unamended and compost‐amended campsite soils. Samples were analyzed for total organic C, total N, potentially mineralizable N (PMN), NH₄, soil moisture, microbial biomass, basal 5‐day respiration rates, and microbial community carbon utilization profiles. Unamended campsite soils had significantly lower levels of PMN, microbial biomass, basal respiration, and number of substrates metabolized in carbon utilization profiles. Compost addition elevated all these impacted parameters on campsite soils, although the increase in basal respiration rate was neither statistically significant nor sufficient to approach rates found underneath vegetation on undisturbed soils. Only the number of substrates metabolized in the carbon utilization profiles was significantly higher on compost‐amended soils than on undisturbed soils. Levels of PMN indicate that campsite soils may lack sufficient N for rapid plant regeneration, whereas amended and undisturbed soils contained adequate quantities of available N. This work suggests that compost amendments can ameliorate impacts to soil chemistry and microbial populations caused by camping, without exceeding the N fertility found on undisturbed soils.     

Local environmental correlates of variability in the organic soils of moorland and alpine vegetation,Mt Sprent,Tasmania

Abstract Data on soils, vegetation and environment were collected between 510 and 1050m a. s. l. on Mt Sprent, southwestern Tasmania, traversing the Gymnoschoenus sphaerocephalus sedgeland-alpine vegetation boundary. One or more of the following horizons were found in almost all soil pits (downwards from the surface to the bed rock) fibric peat, hemic peat, sapric peat, organic sand, sand and clay. Mean total soil depth, mean organic soil depth, mean humification of the soil surface horizon, pH and mean organic content of the surface horizon all decline with altitude, while the redness of the soil and the mean depth of the mineral and gravel layers increase. At four intensively studied sites at 620, 850, 930 and 1040 m the relationships between phytosociological, topographic and water-table variables, and soil characteristics were determined. The pH of the topsoil was significantly positively related to water-table depth at three sites, but there were no other relationships between local environmental variation and soil characteristics that were consistent between most of the four sites, despite a large number of locally significant relationships. The alpine and sedgeland soils differ most markedly in colour, number of horizons and degree of humification of the surface horizon. The vegetation at each site was separated into communities along a drainage gradient. The mesoscale differences in soils seem most likely to be attributable to a vegetation productivity gradient.     

Fungal successions on pine needles fallen at different seasons: The succession of surface colonizers

Field experiments were carried out to investigate influences of seasonal change on the fungal succession occurring on the surface of decaying pine needles at a moder site in Japan. At different seasons, the needles fallen for a short period were collected and marked, then placed on the surface of the O horizon. The needles were removed at intervals and their fungal communities were examined by using a washing technique. Unlike the successions of interior colonizers studied at the same time, those of surface colonizers observed on the fallen needles at four different times are roughly similar to each other.Thysanophora penicillioides was the major first colonizer on the sample needles from the O horizon, andTrichoderma species followed it. In an experiment started in late autumn, three dematiaceous fungi,Chloridium viride var.chlamydosporis, Sporidesmium omahutaense, andChalara sp., commonly occurred and contributed to the darkening of colonized needles. Seasonal variation in climate may have a stronger effect on internal colonizers than external colonizers of needles. Contributions from Sugadaira Montane Research Center, No. 165.     

Temporal Dynamics of Bacterial and Fungal Communities in a Genetically Modified (GM) Rice Ecosystem

We assessed the temporal dynamics of bacterial and fungal communities in a soil ecosystem supporting genetically modified (GM) rice (Oryza sativa L., ABC-TPSP; fusion of trehalose-6-phosphate synthase and phosphatase). Using terminal restriction fragment length polymorphism analysis and real-time quantitative PCR, we compared bacterial and fungal communities in the soils underlying GM rice (ABC-TPSP), and its host cultivar (Nakdong) during growing seasons and non-growing seasons. Overall, the soils supporting GM and non-GM rice did not differ significantly in diversity indices, including ribotype numbers, for either bacteria or fungi. The diversity index (H) in both the bacterial and fungal communities was correlated with water content, dissolved organic carbon (DOC), and ammonium nitrogen, and the correlation was stronger in fungi than in bacteria. Multivariate analysis showed no differences in microbial community structures between the two crop genotypes, but such differences did appear in time, with significant changes observed after harvest. Gene copy number was estimated as 10⁸~10¹¹ and 10⁵~10⁷ per gram of soil for bacteria and fungi, respectively. As observed for community structure, the rice genotypes did not differ significantly in either bacterial- or fungal-specific gene copy numbers, although we observed a seasonal change in number. We summarize the results of this study as follows. (1) GM rice did not influence soil bacterial and fungal community structures as compared to non-GM rice in our system, (2) both bacterial and fungal communities changed with the growth stage of either rice genotype, (3) fungal communities were less variable than bacterial communities, and (4) although several environmental factors, including ammonium nitrogen and DOC correlated with shifts in microbial community structure, no single factor stood out.     

Soil Organic Carbon Content Decreases in Both Surface and Subsoil Mineral Horizons by Simulated Future Increases in Labile Carbon Inputs in a Temperate Coniferous Forest

Soils represent important pools of soil organic carbon (SOC) that can be greatly influenced by labile C inputs, which are expected to increase in future due to CO₂ enrichment of atmosphere and a concomitant rise in plant primary productivity. Studying effects of variable labile C inputs on SOC pool helps to understand how soils respond to global change. However, this knowledge is missing for coniferous forest soils despite being widespread throughout the northern temperate zone. We conducted a 7-month field manipulation experiment to study the effects of variable labile C inputs (simulated by additions of C₄ sucrose) on the C content in soil fractions and on microbial abundance in the organic (O), surface mineral (A), and subsoil mineral (B) horizons of a temperate coniferous forest soil. SOC in less-protected soil fractions and total organic C were substantially decreased by labile C additions that simulated future increases in C inputs. The SOC losses were comparable between the A and B horizon (40% vs. 30%). However, because sucrose availability estimated from its incorporation into soil fractions and microbial biomass sharply decreased with soil depth, the loss of C was higher in the B than in the A horizon when related to the amount of sucrose added. Utilization of sucrose was highest by fungi in the O horizon and by bacteria in the mineral soil horizons. The results indicate that future increases in labile C inputs to coniferous forest soils will cause rapid and substantial losses of SOC in both the surface and subsoil mineral horizons.

     

雪被厚度对色季拉山急尖长苞冷杉林土壤线虫群落的影响

为了解雪被覆盖对青藏高原高寒森林土壤线虫群落的影响,选取藏东南色季拉山急尖长苞冷杉林为研究区,采用高通量测序技术分析不同雪被厚度0、10、20、30 cm下土壤线虫群落特征。结果表明：随着雪被增厚,有机质和全氮含量显著降低(P<0.05),全钾含量显著升高(P<0.05)。雪被增厚对线虫群落Shannon指数、Simpson指数、Pielou指数以及成熟度指数、线虫通路比值(NCR)均未产生显著影响,但NCR值有升高的趋势。雪被增厚使刺嘴纲(Enoplea)及食细菌性线虫的相对丰度增多,同时使20 cm和30 cm雪被下土壤线虫群落结构发生显著变化(P<0.05)。土壤有机质、全氮和全钾含量是影响土壤线虫群落的最关键的3个土壤环境因子。研究表明雪被厚度会对青藏高原色季拉山急尖长苞冷杉林土壤线虫群落产生影响,雪被增厚意味着较为稳定和温暖的土壤环境,利于土壤细菌数量增加,继而利于土壤有机质分解及钾的释放,为刺嘴纲及食细菌性线虫的增多提供了资源与环境条件。目前仍需对青藏高原地区土壤进行系统调查,以更深入的了解该生态脆弱区土壤线虫分布及其响应环境变化的规律。     

Activity and species composition of aerobic methanotrophic communities in tundra soils

The low-temperature, methane-oxidizing activities and species composition of methanotrophic communities in various tundra bog soils were investigated by radioisotopic and immunofluorescent methods. Methanotrophic bacteria carried out the methane oxidation process through all horizons of seasonally thawed layers down to permafrost. The highest activity of the process has been observed in the water surface layer of overmoistured soils and in water-logged moss covers. Up to 40% of¹⁴CH₄ added was converted into¹⁴CO₂, bacterial biomass, and organic exometabolites. By immunofluoresecent analysis it was demonstrated that the representatives of I+X (Methylomonas, Methylobacter, andMethylococcus) and II (Methylosinus, Methylocystis) methanotrophic groups occurred simultaneously in all samples at 61.6% and 38.4%, respectively. The number of methane-oxidizing bacteria in the ecosystems studied was 0.1–22.9×10⁶ cells per gram of soil. Methanotrophic organisms ranged from 1% to 23% of the total bacterial number.     

Microbiological and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia

Some agricultural soils in South Eastern Australia with duplex profiles have subsoils with high bulk density, which may limit root penetration, water uptake and crop yield. In these soils, a large proportion (up to 80%) of plant roots maybe preferentially located within the macropores or in the soil within 1–10 mm of the macropores, a zone defined as the macropore sheath (MPS). The chemical and microbiological properties of MPS soil manually dissected from a 1–3 mm wide region surrounding the macropores was compared with that of adjacent bulk soil (>10 mm from macropores) at 4 soil depths (0–20 cm, 20–40 cm, 40–60 cm and 60–80 cm). Compared to the bulk soil, the MPS soil had higher organic C, total N, bicarbonate-extractable P, Ca⁺, Cu, Fe and Mn and supported higher populations of bacteria, fungi, actinomycetes, Pseudomonas spp., Bacillus spp., cellulolytic bacteria, cellulolytic fungi, nitrifying bacteria and the root pathogen Pythium.In addition, analysis of carbon substrate utilization patterns showed the microbial community associated with the MPS soil to have higher metabolic activity and greater functional diversity than the microbial community associated with the bulk soil at all soil depths. Phospholipid fatty acids associated with bacteria and fungi were also shown to be present in higher relative amounts in the MPS soil compared to the bulk soil. Whilst populations of microbial functional groups in the MPS and the bulk soil declined with increasing soil depth, the differentiation between the two soils in microbiological properties occurred at all soil depths. Soil aggregates (< 0.5 mm diameter) associated with plant roots located within macropores were found to support a microbial community that was quantitatively and functionally different to that in the MPS soil and the bulk soil at all soil depths. The microbial community associated with these soil aggregates thus represented a third recognizable environment for plant roots and microorganisms in the subsoil.     

Influence of nitrate—ammonium ratio on growth and nutrition of Arabidopsis thaliana

We investigated the microbial community structure and population size of arboreal soils—including canopy and bromeliad epiphytic leaf-tank soils—and ground soils in a tropical lowland rainforest in Costa Rica using molecular and cultivation methods. PCR-DGGE analysis of 16S rRNA and 18S rRNA gene fragments and quantitative real-time PCR were applied to survey the bacteria, ammonia-oxidizing bacteria (AOB), and fungi. Bacteria from epiphytic tank soils were isolated and identified. Bacillaceae, Pseudomonadaceae and Micrococcaceae were the most abundant families. According to cluster analysis of DGGE fingerprints a significant difference among the three soil types was evident for bacterial communities. In addition, the microbial communities of canopy and tank soils clustered apart from ground soils. The fungal and AOB communities were diverse but non-specific for the soil types analyzed.     

寒温带针叶林优势树种倒木分解真菌群落多样性及功能差异

为了揭示寒温带针叶林不同树种倒木分解中真菌群落的分布格局,探讨影响倒木真菌群落分布的养分驱动因子。采用Illumina MiSeq高通量测序技术和R语言等分析方法对微生物多样性数据进行信息挖掘,解析白桦(Betula platyphylla Suk.)、兴安落叶松(Larix gmelinii(Rupr.)Kuzen)、樟子松(Pinus sylvestris var. mongolica Litv.)倒木分解初期真菌群落的多样性及功能差异。研究发现,寒温带针叶林中白桦、樟子松倒木优势菌群为Basidiomycota(担子菌门)、Trichaptum(附毛菌属),兴安落叶松倒木优势菌群为Ascomycota(子囊菌门)、Acidea菌属。多样性分析表明,不同树种倒木真菌群落的Alpha多样性由高到低依次为兴安落叶松、白桦、樟子松,树种的差异极显著的改变了操作分类单元(OTU)、属水平上倒木真菌群落的Beta多样性。菌群生态分析表明,腐生型是3种倒木上优势真菌的主要生态类型,木质腐生为白桦、樟子松倒木上真菌的主要生活方式,土壤腐生为兴安落叶松真菌类群的主要生活方式。养分关联分析表明,pH、全碳(TC)、全氮(TN)、碳氮比(C/N)、半纤维素、木质素等养分指标在3种倒木间存在显著性差异,其中含水率(MC)、TC、TN、纤维素、半纤维素是影响倒木优势真菌群落分布的主要养分因素。不同树种对倒木真菌群落的富集具有差异性,这种差异带来的微生物多样性及功能变化对寒温带森林生态系统的物质循环具有重要的科学意义。     

Physical disturbance of an upland grassland influences the impact of elevated UV-B radiation on metabolic profiles of below-ground micro-organisms

This investigation determined the response of soil microbial communities to enhanced UV‐B radiation and disturbance in upland grassland. A factorial field experiment encompassing two levels of UV‐B supplementation (simulating ambient and a 30% increase in stratospheric ozone) and two levels of disturbance (disturbed and undisturbed) was established at Buxton Climate Change Impacts Laboratory, Derbyshire, UK, and maintained for 7 years prior to sampling. Enhanced UV‐B increased microbial utilization of carbohydrates, carboxylic acids, polymers and aromatic compounds present in Biolog® GN plates when inoculated with soils taken from disturbed plots, but did not affect carbon utilization of soil microbial communities associated with undisturbed plots (UV‐B×Disturbance interaction, P<0.05 for each substrate type). UV‐B treatment did not affect numbers of bacteria or fungi. Direct microscopic counts showed fewer bacteria in soil originating from disturbed plots than from undisturbed plots (Disturbance, P<0.001), although a greater number of culturable bacteria and fungi were isolated from disturbed than from undisturbed soils (Disturbance, P<0.001). No UV‐B‐ or disturbance‐related differences in protein, starch or urea hydrolysis were exhibited by bacterial isolates. UV‐B treatment did not affect total plant biomass within undisturbed plots or the biomass of individual groupings of grasses, forbs and mosses. Per cent root length colonized by arbuscular mycorrhizal fungi (AMF) was not affected by enhanced UV‐B radiation in the undisturbed plots. Neither AMF nor plant biomass was measured in disturbed plots. The key findings of this study show that UV‐B‐mediated alterations in carbon utilization occurred in soil microbial communities subjected to disturbance, but such changes were not observed in communities sampled from undisturbed grassland. Differences in the catabolic potential of microbial communities from disturbed grassland subjected to enhanced UV‐B are probably related to plant‐mediated changes in resource availability or quality.