Mitochondrial DNA phylogeography of Acrossocheilus paradoxus (Cyprinidae) in Taiwan

Nucleotide sequences of 3' end of the cytochrome b gene, tRNA genes, D-loop control region, and the 5' end of the 12S rRNA of mitochondrial DNA (mtDNA) were used to assess the genetic and phylogeographic structure of Acrossocheilus paradoxus populations, a Cyprinidae fish of Taiwan. A hierarchical examination of populations in 12 major streams from three geographical regions using an analysis of molecular variance (AMOVA) indicates high genetic differentiation both among populations (PhiST = 0.511, P < 0.001) and among regions (PhiCT = 0.368, P < 0.001). Limited migration largely contributed to the genetic differentiation. High nucleotide diversity (1.13%) and haplotype diversity (0.80%) were detected among populations. The degree of genetic differentiation was correlated with geographical distance between populations, a result consistent with the one-dimensional stepping stone models. A neighbour-joining tree recovered by (DAMBE) supports the pattern of isolation by distance and reveals a closer relationship between populations of the central and southern regions. A minimum spanning network based on nucleotide substitutions reflected migration routes from populations of the central region to the northern and southern regions, respectively. Postglacial colonization and expansion can explain the phylogeographical pattern. Single and ancient migration events may have allowed the northern region to attain the monophyly of mtDNA alleles. In contrast, most populations within geographical regions are either paraphyletic or polyphyletic due to the relatively shorter time period for coalescence. Both low haplotype number and genetic variability suggest a bottleneck event in the Chingmei population of northern Taiwan. Based on coalescence theory, the monophyly of the Tungkang population of the southern region may be associated with a founder event.     

Characterization and genetic variations of satellite DNAs in Acrossocheilus paradoxus (Günther, 1868) (Cyprinidae) indicate population expansion

A Hin dIII repetitive DNA family from Acrossocheilus paradoxus , a cyprinid fish endemic to Taiwan, was isolated and identified as a tandem arrangement of satellites in the genomic DNA. Cross-hybridization revealed similar patterns across fish genera and two families and suggested that this repetitive DNA is a conserved satellite sequence in fish. Forty-five monomeric repeat units of the repetitive DNA were cloned and sequenced, and found to be approximately 210 base pairs long and to have an average base composition of 52·8% A+T. Alignment analysis by examining 45 cloned repeat DNA strands from 22 individuals from nine different streams suggested that this repetitive DNA is highly polymorphic. The variability of sequences was mainly attributable to point mutations within the sequences. Genetic distances in all repeated DNAs ranged from 0 to 0·129 (average, 0·06). The high levels of genotype diversity and low levels of nucleotide diversity in satellites suggest population expansion of A. paradoxus .     

Foraging modes of stream benthic fishes in relation to their predation effects on local prey density

Habitat use and foraging behavior of two benthic insectivorous gobies, Rhinogobius sp. CO (cobalt type) and Rhinogobius sp. DA (dark type), were examined in relation to their predation effects on local prey density in a small coastal stream in southwestern Shikoku, Japan. Correlations among the foraging range, frequency of foraging attempts and current velocity indicated that individuals using fast-current habitats had small foraging ranges and infrequently made foraging attempts while those in slow currents frequently foraged over large areas. The former and the latter were recognized as ambush and wandering foragers, respectively. Interspecific comparisons of habitat use, foraging behavior and prey preference suggested that Rhinogobius sp. CO selectively forage mobile prey by ambushing in fast currents, whereas Rhinogobius sp. DA randomly forage available prey by wandering in slow-current habitats. A cage experiment was conducted to assess prey immigration rate and the degree of predation effects on local prey density in relation to current velocity. The results of the experiment support, at least in part, our initial predictions: (1) prey immigration rates increase with current velocity and (2) the effects of fish predation on local prey density are reduced as current velocity increases. Overall results illustrated a link between the foraging modes of the stream gobies and their predation effects on local prey density: fish adopt ambush foraging in fast currents, where the decrease in prey density tends to be less, whereas fish actively forage over large areas in slow currents, where the decrease in prey is relatively large.     

A comparison of the benthic macroinvertebrate communities in a trout stream: Winter and spring 1973 and 1977

The benthic macroinvertebrate riffle community of the Bushkill Creek (Northampton County, PA) was sampled monthly, December through May 1972–73 and 1976–77. Total precipitation in 1972–73 was 22.3 cm more than in 1976–77 and water and air temperatures were also higher. In April and May, community composition (dominant taxa and similarity indices) was less similar than in December, January and February. In April and May there were fewer Hydropsyche (Trichoptera) and Ephemerella (Ephmeroptera) and more Chironomidae (Diptera) and Antocha (Diptera) than in 1973. Total numbers and biomass were lower in 1977 than in 1973. The reduction in Hydropsyche, Ephemerella, biomass and total numbers in Spring 1977 may be due to the scouring effect of ice break up. Inspite of fluctuating environmental conditions the macroinvertebrate community exhibited stability.     

Temporal variation in foraging group structure of a size-structured stream fish community

Temporal variation in foraging group structure of a fish assemblage was examined in a flood-prone stream in southern Hokkaido, Japan. Foraging behaviour was observed underwater for four species which inhabit the water column: ayu, Plecoglossus altivelis, white-spotted charr, Salvelinus leucomaenis, masu salmon, Oncorhynchus masou, and Japanese dace, Tribolodon hakonensis, with each species being categorized into five size classes (species-size group; SSG). Based on foraging behaviour, each SSG of the fish assemblage was classified into one of four foraging groups: algae grazers, drift foragers, benthos-drift foragers, and omnivores, defined as SSG exhibiting similar foraging behaviour. All size classes of ayu, and of charr and salmon were categorized as algae grazers and drift foragers, respectively, throughout the study period. In contrast, size classes of dace were categorized as drift foragers, benthos-drift foragers, or omnivores with the same size classes often assigned to different foraging groups from month to month. Digestive tract contents of the fishes in the four foraging groups reflected their observed foraging behaviour, and foraging groups were therefore regarded as representing trophic groups. Abundance and membership of each foraging group varied in accordance with changes in abundance of SSG due to their growth, immigration, emigration, and/or mortality. Moreover, due to numerical dominance within the assemblage, plasticity in foraging behaviour of small- and medium-sized dace also played a key role in determining variability in the foraging group structure. Relative frequencies of two types of foraging behaviour, algae nipping and benthos foraging, of the small-sized dace were significantly correlated with the level of each resource, whereas no significant relationship was detected between foraging frequencies of the medium-sized dace and either resource. Fluctuations in foraging group structure within this assemblage occurred through niche shifts of some component members and by changes in SSG composition.     

Distribution and seasonal abundance of benthic macroinvertebrates in a subtropical Florida lake

We studied the distribution and seasonal abundance of benthic macroinvertebrates from July 1975 through September 1976 in a hypereutrophic lake in subtropical Florida. The benthic community was comprised principally of oligochaetes (56.1%), chironomids (37.1%), and chaoborids (5.7%). Numbers of taxa and mean densities correlated negatively with depth and positively with mean grain size of the substratum and dissolved oxygen concentration at the mud-water interface. Seasonal abundances and life history information obtained for the predominant species of Chironomidae (Polypedilum halterale, Glyptotendipes paripes, Chironomus crassicaudatus, Cryptochironomus fulvus, C. blarina, Cladotanytarsus sp., Procladius culiciformis, and Coelotanypus concinnus) indicated that all of these species are multivoltine with rapid generation times. Larval lengths of life at summer temperatures, 27–31 °C, ranged from 14–22 days indicating that sampling in subtropical lakes should be at short intervals (approximately 3 days) if the life cycles, ecology, and function of the components of the benthic community is to be understood.     

Macrophyte beds contribute disproportionately to benthic invertebrate abundance and biomass in a sand plains stream

Macrophyte beds have been shown to influence organic matter retention and nutrient processing in streams. Less is known about the extent to which plant beds contribute to abundance, biomass, and diversity of macroinvertebrate assemblages in low-order streams. We measured aquatic invertebrate abundance, biomass, and diversity associated with plant beds and sand/gravel patches in a low-gradient second-order stream in the Central Sand Plains of Wisconsin, USA from March to October. Invertebrate abundance and biomass were higher on average in plant beds (2,552 m⁻² and 1,575 mg m⁻²) than in sand/gravel patches (893 m⁻² and 486 mg m⁻²). Although sand/gravel habitat was over three times more abundant than plant beds in the study reach, plant beds and sand/gravel patches contributed similarly to invertebrate abundance and biomass at the whole-reach scale. The abundance and biomass of invertebrates associated with plant beds decreased from spring to autumn. Non-insect invertebrates in the plant beds increased in relative abundance as the year progressed. Shannon–Weiner diversity and taxa richness of invertebrates were higher in the plant beds than in the sand/gravel habitat. Our results suggest that plant beds can represent hot spots for invertebrate abundance and production in low-gradient streams, and have implications for stream management and restoration in these types of ecosystems. Handling editor: S. I. Dodson     

Effects of salinity gradients on benthic invertebrate and diatom communities in a German lowland river

The Lippe is a lowland river located in the Western part of Germany and has been heavily impacted by coal mining activities ever since. Although mining activities significantly decreased during the last decades, the associated discharge of salt-enriched mine water into the river still poses a persistent threat to the local benthic invertebrate and diatom communities. To analyze the effect of salt pollution on invertebrate and diatom species, biological and chemical data were compiled for this study from a publicly available database. Changes in the community composition due to increased salt concentrations were explored by Non-Metrical-Multidimensional Scaling. Indicator species and salinity thresholds for single species and communities were identified using the method TITAN (Threshold Indicator Taxa Analysis). The method is an analytical approach to detect changes in frequency and abundance of species along an environmental gradient by combining the methods of change point analysis (nCPA) and indicator species analysis. The obtained salinity preferences and individual and community thresholds were compared to the literature and existing salinity classifications. For both diatoms and benthic invertebrates, Non-Metrical-Multidimensional Scaling showed a clear split between samples of high and low salinities. Significant salinity thresholds were determined for 50 invertebrate and 58 diatom species of which 23 respectively 18 species were described as ‘reliable’ indicators according to the specifications given by Baker and King (2010). A majority of salt-tolerant indicator organisms were invasive species. For both organism groups, major changes in community composition were detected at a conductivity value exceeding 900 μS/cm. A reduction of the average salinity to below this threshold may have positive effects on the overall species richness and the persistence of sensitive taxa in the river Lippe. Individual and community thresholds may however be data-dependent to a certain degree and subjected to fluctuations considering the potential interdependencies between salinity and additional physico-chemical and environmental parameters (e.g. water temperature, lime content).     

Feeding habits and food resources of filter-feeding Trichoptera in a regulated mountain stream

A year-round study was conducted to examine feeding habits and food resources of the filter-feeding Trichoptera Arctopsyche grandis and Brachycentrus occidentalis along a regulated mountain stream gradient. There was a well defined longitudinal species replacement with A. grandis reaching maximum densities 2.3 kilometers below the impoundment, and concomitant with its decline downstream was an increase in B. occidentalis. At all sampling sites the < 75 µm organic seston fraction usually consisted primarily of diatoms (>70%, by areal estimate on microscope slides), whereas the 75–250 µm and > 250 µm seston fractions were predominantly composed of detritus (> 80 %). B. occidentalis larvae consumed primarily detritus and diatoms (> 70 % of the diet), while A. grandis ingested a variety of materials with animals, detritus and/or filamentous algae often constituting > 80% of the diet. Animal material was over-represented in the diets of both species when compared with amounts in the seston. Feeding habits provided partial explanations for the distinct longitudinal distribution patterns of filter-feeding Trichoptera observed in the regulated river.     

Individual and combined effects of fish predation and bed disturbance on stream benthic communities: a streamside channel experiment

1. The composition and spatiotemporal dynamics of biological communities are influenced by biotic processes, such as predation and competition, but also by physical disturbances, such as floods in running waters. However, the interplay of disturbance with predation is still poorly understood, especially in frequently disturbed streams. Further, different predator species can affect prey communities in different ways depending on their feeding mode and efficiency. 2. We investigated the individual and combined effects of flood‐induced bed disturbance and fish predation on the benthos for 4 weeks in 18 streamside channels fed by a flood‐prone New Zealand river. Bed movements caused by floods were simulated by tumbling the substratum in half the channels. Six channels each were stocked with introduced brown trout (Salmo trutta) or native upland bully (Gobiomorphus breviceps) or had fish excluded. We studied algal biomass and both invertebrate density and daytime activity on surface stones on several dates after the disturbance, invertebrate community composition in the substrata of the entire channels on day 28 and leaf decomposition rates over the 28‐day period. 3. Disturbance affected algal biomass and density, richness and activity of surface stone invertebrates, and overall density and richness of channel invertebrates. Presence or absence of fish, by contrast, did not influence overall invertebrate standing stocks when subsurface substrata were included but did affect invertebrate densities on surface stones in 45% of all analysed cases and invertebrate activity on surface stones in all cases. Leaf decomposition rates were not influenced at all by the experimental manipulations. 4. Native upland bullies featured more often than exotic brown trout in causing invertebrate density changes and equally often in causing changes to grazer behaviour. Overall, our results imply that fish predation can have strong effects on the benthic invertebrate community in frequently disturbed streams, especially via behavioural changes.     

Seasonal shifts in the assembly dynamics of benthic macroinvertebrate and diatom communities in a subtropical river

Identifying seasonal shifts in community assembly for multiple biological groups is important to help enhance our understanding of their ecological dynamics. However, such knowledge on lotic assemblages is still limited. In this study, we used biological traits and functional diversity indices in association with null model analyses to detect seasonal shifts in the community assembly mechanisms of lotic macroinvertebrates and diatoms in an unregulated subtropical river in China. We found that functional composition and functional diversity (FRic, FEve, FDis, MNN, and SDNN) showed seasonal variation for macroinvertebrate and diatom assemblages. Null models suggested that environmental filtering, competitive exclusion, and neutral process were all important community assembly mechanisms for both biological groups. However, environmental filtering had a stronger effect on spring macroinvertebrate assemblages than autumn assemblages, but the effect on diatom assemblages was the same in both seasons. Moreover, macroinvertebrate and diatom assemblages were shaped by different environmental factors. Macroinvertebrates were filtered mainly by substrate types, velocity, and COD_Mn, while diatoms were mainly shaped by altitude, substrate types, and water quality. Therefore, our study showed (a) that different biological assemblages in a river system presented similarities and differences in community assembly mechanisms, (b) that multiple processes play important roles in maintaining benthic community structure, and (c) that these patterns and underlying mechanisms are seasonally variable. Thus, we highlight the importance of exploring the community assembly mechanisms of multiple biological groups, especially in different seasons, as this is crucial to improve the understanding of river community changes and their responses to environmental degradation.     

Shredder colonization and decomposition of green and senescent leaves during summer in a headwater stream in northern Japan

We conducted a decomposition experiment using green and senescent maple and alder leaves in a coastal headwater stream in Hokkaido, northern Japan, during June and July 2000. We estimated whether shredder colonization on the leaves and leaf breakdown differed between green and senescent leaves during the experimental period. Late-instar Lepidostoma complicatum (Trichoptera) and Sternomoera rhyaca (Amphipoda) were the predominant shredder taxa among the macroinvertebrates that colonized litterbags. There was no significant difference in shredder colonization between green and senescent leaves although we found a significant difference between maple and alder leaves. The colonization patterns of large individuals of L. complicatum and S. rhyaca differed from those of small individuals. All decomposition coefficients of green and senescent leaves were high. During the experiment, decomposition was significantly faster in maple than in alder leaves, although no significant difference was found between green and senescent leaves. However, the fragmented nitrogen portion was higher in green leaves than in senescent leaves during the experiment. Higher nitrogen release (2–2.5 times more) as particulate organic matter in green than in senescent leaves indicates that green leaves may be a potentially valuable food resource for other macroinvertebrate collector–gatherer species.     

Spatial and temporal variation of fish assemblages in a subtropical small stream of the Huangshan Mountain

Spatial and temporal variation of fish assemblages were investigated seasonally from May 2007 to February 2008 across 11 study sites in a subtropical small stream, the Puxi Stream, of the Huangshan Mountain. Along the longitudinal gradient from headwater to downstream, fish species richness and abundance increased gradually, but then decreased significantly at the lower reaches. The highest species richness and abundance were observed in August and the lowest in February. Based on analysis of similarities (...     

Stream fish communities and their associations to habitat variables in a rain forest reserve in southeastern Brazil

This paper describes the spatial variability of fish communities and identifies patterns of association between fish communities and habitat variables, including anthropogenic factors. We sampled streams inside and in the surroundings of a rain forest reserve in the southeast of Brazil in the rainy season. We could distinguish three main groups of streams: upland streams (draining the upland, flat portions of the mountain ridge of Serra de Paranapiacaba), adventitious streams of clearwater mountain torrents (small streams draining confined valleys in the slopes of this sierra), and large streams of clearwater mountain torrents (relatively unconstrained large streams close to the foots of the mountains). Despite the high variability of fish communities associated with these streams we identified some patterns using exploratory statistical analyses. These patterns were corroborated by additional field observations and information from the scientific literature. The main differences in fish community composition and diversity among the three groups of streams are probably related to large-scale factors such as elevation and position of the stream in the watershed. However, differences within these three groups seem to be mostly due to site-specific factors. Differences of instream characteristics are likely to be caused by natural variability of the ecosystems but also, in some cases, by human disturbances like pollution from human settlements, agriculture and mining.     

The fish community of a high mountain stream in Taiwan and its relation to dam design

Synopsis The fish community of a high mountain stream in Taiwan was studied from 1988 to 1990 in a 16 km section of Ta-chia river where a new dam is planned for construction. There were 16 species of fish belonging to 7 families; 15 genera were recorded. Six species are endemic to Taiwan. The dominant species wereZacco pachycephalus, Acrosscheileus paradoxus andRhinogobius brunneus. The composition of fish fauna was different between the eight study sites. Adjacent sites did not show a higher similarity than remote ones. AdultZ. pachycephalus andA. paradoxus showed seasonal aggregation behavior in the stream. At two distinct sites, Kukan and Tungmau, these two species had similar breeding and stock composition patterns with an intensified production period of juveniles from late autumn to early winter and a low, but continuous production period of juveniles in summer months. This information suggest that fishes in the river have special adaptations to the typhoon season in summer and benthic algal blooming in winter. The similarity of fish community and the independent breeding sites of endemic fishes in Kukan and Tungmau also suggest that these are important factors to consider for conservation when the flooding area of a high mountain dam is designed.     

Giving‐up densities and ideal pre‐emptive patch use in a predatory benthic stream fish

1. We used observational and experimental field studies together with an individual‐based simulation model to demonstrate that behaviours of mottled sculpin (Cottus bairdi) were broadly consistent with the expectations of Giving‐Up Density theory and an Ideal Pre‐emptive Distribution habitat selection model. 2. Specifically we found that: (i) adult mottled sculpin established territories within patches characterised by significantly higher prey densities and prey renewal rates than patches occupied by juveniles or randomly selected patches; (ii) patches abandoned by adult sculpin possessed significantly lower prey densities than newly occupied patches, although this was not true for juveniles; (iii) the observed giving‐up density (GUD) for adult sculpin (i.e. average prey density in patches recently abandoned) increased linearly with increasing fish size up to the average prey density measured in randomly selected patches (i.e. 350 prey items per 0.1 m²) and decreased with increasing sculpin density and (iv) juveniles rapidly shifted their distribution towards the highest quality patches following removal of competitively dominant adult sculpin. 3. These results provide the first evidence of the applicability of GUD theory to a stream‐dwelling organism, and they elucidate the underlying factors influencing juvenile and adult sculpin habitat selection and movement behaviours. Furthermore, optimal patch use, ideal pre‐emptive habitat selection and juvenile ‘floating’ provide behavioural mechanisms linking environmental heterogeneity in the stream benthos to density‐dependent regulation of mottled sculpin populations in this system.     

Meta‐community theory and stream restoration: evidence that spatial position constrains stream invertebrate communities in a mine impacted landscape

Mining activities, particularly acid mine drainage, often result in adverse effects on stream diversity and ecosystem functioning, and increased concern about these effects has generated a focus on restoration of mine‐impacted waterways. However, many stream restoration projects have not led to increased stream diversity and ecological recovery. One reason for this failure may be that restoration practitioners focus on local environmental conditions and fail to consider the importance of dispersal as a driver of stream invertebrate composition. To test this hypothesis, we used a meta‐community analysis to compare the influence of the local stream conditions with the regional supply of colonists. Invertebrate communities and physico‐chemical conditions were sampled in 37 streams across a mine‐impact gradient on the Stockton Plateau, West Coast of New Zealand's South Island. We found that pH, temperature, dissolved metals, and sediment significantly influenced invertebrate community composition. Furthermore, the spatial location of streams was a good predictor of stream diversity and invertebrate communities, independent of local environmental conditions. This result indicates an important role for regional dispersal barriers in determining stream invertebrate communities. Consequently, consideration of both the locations and strategic preservation of future colonist source streams and potential dispersal barriers during mine planning would enhance post‐mining restoration.