Evolutionary genetics of the endemic Schizorathicine (Cypriniformes: Cyprinidae) fishes of Lake Rara,Nepal

The three endemic species of Schizothorax from Lake Rara, Nepal comprise a putative cyprinid species flock. Mitochondrial DNA sequences were compared for specimens of the endemic species S. raraensis, S. macrophthalmus, and S. nepalensis, and specimens of S. richardsonii and S. progastus from the Karnali River, Koshi River, and Kali Gandaki River drainages. An analysis of molecular variance demonstrated that S. nepalensis is genetically distinct from a group composed of S. raraensis and S. macrophthalmus. Phylogenetic analyses based on parsimony failed to corroborate or conclusively reject a hypothesis of monophyly for the three endemic species of Schizothorax from Lake Rara. The mtDNA haplotypes of S. richardsonii and S. progastus from the Karnali River drainage were not significantly differentiated from one another, but pairwise comparisons of haplotypes from the Lake Rara basin, Karnali River drainage, Koshi River drainage, and Kali Gandaki River drainage were significantly differentiated from one another.     

Length‐weight relationships of four snowtrout species from the Kashmir Valley in India

Length–weight relationships (LWR) are presented for one species of the genus Schizopyge [S. curvifrons (Heckel, 1838)] and three species of the genus Schizothorax [S. esocinus (Heckel, 1838), S. labiatus (McClelland, 1842) and S. plagiostomus (Heckel, 1838)] from different water bodies of the Kashmir Valley, India. A total of 774 specimens were sampled and measured from January to November 2011. No information regarding LWRs of these species was available in FishBase.     

Genetic diversity and evolutionary history of the Schizothorax species complex in the Lancang River (upper Mekong)

The genus Schizothorax (Cyprinidae), one of the most diverse genera of ichthyofauna of the Qinghai‐Tibetan Plateau (QTP), is a good candidate for investigating patterns of genetic variation and evolutionary mechanisms. In this study, sequences from the mitochondrial control region, the cytochrome b gene, and two nuclear genes were used to re‐examine the genetic diversity and investigate the evolutionary history of the Schizothorax species complex inhabiting the Lancang River. Three maternal clades were detected in the Schizothorax species complex, but frequent nuclear allele sharing also occurred among the three maternal clades. A discrepancy between topologies of mitochondrial and nuclear loci might result from introgression or/and incomplete lineage sorting. The divergence of the clades of the Schizothorax species complex was closely related to the Late Pliocene and Early Pleistocene orogenesis of the QTP and Southwest Mountains of China. Demographic analyses indicated that the species complex subsequently persisted in situ with stable populations during Pleistocene glacial cycling, which suggested that Pleistocene climate changes did not exert a remarkable influence on the species complex. Our study provides a comprehensive analysis of the genetic diversity and evolutionary history of the Schizothorax species complex in the Lancang River.     

Molecular cloning and expression profile of snow trout GPDH gene in response to abiotic stress

Glycerol-3-phosphate dehydrogenase (GPDH) gene possibly plays a key role for cold acclimation process in snow trout during winter months when water temperature goes down to 4–5?°C. In this study, 1,012?bp nucleotide fragment of GPDH gene was obtained from two snow trout species (Schizothorax richardsonii and S. niger; family: Cyprinidae), distributed in several Himalayan rivers. The gene encoded a protein of 334 amino acids. The encoded protein sequence was very similar to GPDH of Danio rerio (94.36?%) using BLASTx searches. In S. richardsonii the qRT-PCR showed highest expression in muscle tissue followed by liver and also revealed 19 fold gene expression in liver tissue under cold (5?°C) in comparison with warm (15?°C) condition. The elevated expression levels of GPDH cDNA on cold treatment furthermore suggest that GPDH plays a role in stress related responses in S. richardsonii. The phylogenetic analysis showed that the two snow trout species GPDH share the same clade with characterized GPDHs from other teleost fishes suggesting a common evolutionary origin and a similar catalytic function. In addition, the Ka/Ks ratios of these sequences suggested that they are under purifying selection. Moreover, the expression profile of GPDH gene among co generic species of genus Schizothorax showed that GPDH cDNA expression was highest in S. richardsonii and lowest in S. esocinus which gives an indication of species specific adaptation in relation to different geographical areas.     

Chromosomes and evolution of the ground squirrel,Spermophilus richardsonii

Summary Chromosomes were analyzed from two geographically isolated populations of Spermophilus richardsonii. The diploid chromosome number was 36 in S. r. richardonii (Montana population) and 34 in S. r. elegans (Wyoming-Colorado population). The richardsonii Karyotype differed from elegans by the presence of two pairs of acrocentric autosomes whereas the elegans Karyotype lacked acrocentric autosomes and had an extra pair of submetacentrics.A chromosomal polymorphism, produced by centric fusion, probably existed in the more primitive richardsonii population. After ancestral stock of the elegans population became geographically isolated, both populations of S. richardsonii evolved independently and developed different karyotypes derived from the original polymorphism. Although the karyotypes have evolved to a stage found in valid species, the populations may not have been separated long enough to attain reproductive isolation.This investigation was supported by a grant from the National Science Foundation (GB-503).     

Discovery of ten new specimens of large‐billed reed warbler Acrocephalus orinus,and new insights into its distributional range

We here report the finding of ten new specimens of the poorly known large‐billed reed warbler Acrocephalus orinus. Preliminary identifications were made on the basis of bill, tarsus and claw measurements, and their specific identity was then confirmed by comparison of partial sequences of the cytochrome b gene with a large data set containing nearly all other species in the genus Acrocephalus, including the type specimen of A. orinus. Five of the new specimens were collected in summer in Afghanistan and Kazakhstan, indicating that the species probably breeds in Central Asia, and the data and moult of the others suggest that the species migrates along the Himalayas to winter in N India and SE Asia. The population structure suggests a stable or shrinking population.     

Biogeography and molecular phylogeny of the genus Schizothorax (Teleostei: Cyprinidae) in China inferred from cytochrome b sequences

Aim To test a vicariant speciation hypothesis derived from geological evidence of large‐scale changes in drainage patterns in the late Miocene that affected the drainages in the south‐eastern Tibetan Plateau. Location The Tibetan Plateau and adjacent areas. Methods The cytochrome b DNA sequences of 30 species of the genus Schizothorax from nine different river systems were analysed. These DNA sequences were analysed using parsimony, maximum likelihood and Bayesian methods. The approximately unbiased and Shimodaira–Hasegawa tests were applied to evaluate the statistical significance of the shortest trees relative to alternative hypotheses. Dates of divergences between lineages were estimated using the nonparametric rate smoothing method, and confidence intervals of dates were obtained by parametric bootstrapping. Results The phylogenetic relationships recovered from molecular data were inconsistent with traditional taxonomy, but apparently reflected geographical associations with rivers. Within the genus Schizothorax, we observed a divergence between the lineages from the Irrawaddy–Lhuit and Tsangpo–Parlung rivers, and tentatively dated this vicariant event back to the late Miocene (7.3–6.8 Ma). We also observed approximately simultaneous geographical splits within drainages of the south‐eastern Tibetan Plateau, the Irrawaddy, the Yangtze and the Mekong–Salween rivers in the late Miocene (7.1–6.2 Ma). Main conclusions Our molecular evidence tentatively highlights the importance of palaeoriver connections and the uplift of the Tibetan Plateau in understanding the evolution of the genus Schizothorax. Molecular estimates of divergence times allowed us to date these vicariant scenarios back to the late Miocene, which agrees with geological suggestions for the separation of these drainages caused by tectonic uplift in south‐eastern Tibet. Our results indicated the substantial role of vicariant‐based speciation in shaping the current distribution pattern of the genus Schizothorax.     

广西被子植物二新记录属

在第四次中药资源普查中采集了大量标本,经过对这些标本进行仔细鉴定并查阅相关资料,确定其中两号标本为香茜属(Carlemannia Benth.)和粘腺果属(Commicarpus Standl.)植物。这两属植物在广西尚无报道,为首次记录。香茜属植物叶对生,子房下位,无托叶,雄蕊仅有2枚,这和茜草科相似但又不同,系统位置较混乱,以前曾放于茜草科( Rubiaceae)和忍冬科( Caprifoliaceae)中,最近该属和蜘蛛花属独立成香茜科( Car-lemanniaceae)。该属植物共有3种,沿喜马拉雅山脉向东一直分布到缅甸、越南北部。我国西藏东南、云南南部、广西西北部分布一种即香茜( Carlenannia chinenesis Hook. f.)。粘腺果属是紫茉莉科( Nyctaginaceae)主产热带地区的1个属,全世界约25种分布于热带非洲和阿拉伯半岛南部,在南亚、东南亚和墨西哥至热带美洲也有少量分布。中国产2种,其中广西产1种即中华粘腺果[ Commiaicarpus chinensis ( L.) Heim.]。该种植物分布广泛,从南亚次大陆向东至中南半岛、马来半岛,向北到我国西沙群岛、海南岛以及广州附近,在广西首次记录,产凤山县和凌云县。     

DNA barcoding reveals cryptic diversity in the peanut worm Sipunculus nudus

Peanut worm (Sipunculus nudus) is a cosmopolitan species mainly distributed in tropical and subtropical coastal waters. Analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene sequences among S. nudus from GenBank revealed high genetic variation (p‐distance, 0.115–0.235; k2p, 0.128–0.297) and paraphyletic relationships. These indicated misidentification and/or cryptic diversity may be present in the genus Sipunculus. To understand the genetic diversity and to manage the recourse of S. nudus, we collected specimens from coastal waters of southern China and Taiwan. In the phylogenetic topology, specimens can be separated into four distinct clades; three of these clades (clade A, B and C) were only represented from this region (southern China and Taiwan), but the clade D grouped with individuals from Central America (Atlantic coast). Furthermore, individuals of clades A and D were collected at the same location, which does not support the hypothesis that this genetic break reflects contemporary geographical isolation. The four distinct clades observed among coastal waters of southern China and Taiwan indicated underestimated diversity. It is noteworthy that the cryptic diversity is vulnerable under high pressure of human activity.     

Occurrence of Sapindopsis (Platanaceae) in the Cretaceous of Eurasia

Three new species of the genus Sapindopsis Fontaine from Central Asia and western Siberia are described: S. neuburgae (Vachr.) Golovn., comb. nov., S. janschinii (Vachr.) Golovn., comb. nov., and S. kryshtofovichii (I. Lebed.) Golovn., comb. nov. Geographical and stratigraphic analyses have shown that the genus evolved in Eurasia from the Middle Albian to the Cenomanian, and was mostly restricted to the subtropics of the Euro-Sinian phytogeographic area from the Middle East to Russian Primorye and northern China. The are no reliable records of Sapindopsis from Europe. The migration of Sapindopsis from North America to Eurasia through the Bering Land Bridge was most probably related to the Early-Middle Albian climatic optimum.     

Characterization and Structural Analysis of Hepcidin Like Antimicrobial Peptide From Schizothorax richardsonii (Gray)

Innate immune system is a primary line of defense in fish that protects it from the invading pathogens. Antimicrobial peptides (AMPs) are widely distributed in nature and are essential components of innate immunity. These molecules enable the host’s innate immune system to fight against a variety of infectious agents. One such AMP, hepcidin, is a cysteine rich amphipathic peptide. We have amplified, cloned and characterized hepcidin like AMP from Schizothorax richardsonii that inhabits one of the most difficult aquatic ecosystems in the Indian Himalayas. The cDNA encoding hepcidin like peptide was amplified as a 371 bp fragment with an open reading frame (ORF) of 279 nucleotides flanked by 5′ and 3′ UTRs of 70 and 22 bases respectively. This ORF encodes a peptide of 93 amino acids with a signal peptide of 24 amino acids and a mature peptide of 25 amino acids. The mature hepcidin like peptide of S. richardsonii has eight cystine residues that participate in the formation of four disulfide bonds, a unique feature of hepcidin like AMPs. A 3D model of hepcidin like mature peptide was generated using Modeller 9.10 which was validated using PROCHECK and ERRAT. Phylogenetic analysis of hepcidin like AMP from S. richardsonii revealed that it was closely related to hepcidin from olive barb (Puntius sarana).     

A re‐examination of the molecular phylogeny and biogeography of the genus Schizothorax (Teleostei: Cyprinidae) through enhanced sampling,with emphasis on the species in the Yunnan–Guizhou Plateau,China

The mitochondrial DNA cytochrome b sequences of 36 Schizothorax species from 51 localities in the Yunnan–Guizhou Plateau (YGP) and its adjacent areas were analysed. Maximum parsimony, Maximum likelihood and Bayesian phylogenetic analyses were performed to examine the relationships of Schizothorax species. A hypothesis of the phylogenetic relationships of the species is given. A relaxed molecular clock based on Bayesian evolutionary analysis was used to tentatively calculate the divergence times of Schizothorax. Samples from the YGP were tentatively grouped into three geographically distributed clades: the Tsangpo‐Irrawaddy, the Mekong‐Salween and the Trans‐Jinsha River (including Jinsha, Red, Nanpan and Beipan Rivers). Calibration of the molecular clock revealed that two geological periods, the late Miocene about 10 million years before present (Myr BP) and the Pliocene (4.0 Myr BP), were important times in the vicariant speciation of Schizothorax. The phylogenetic history of the species is congruent with events caused by the uplift of the Tibetan Plateau and the YGP. The divergence of Schizothorax species in YGP began in the Pliocene. Our phylogenetic trees did not support the hypothesis that the paleo Jinsha River was drained through the Yangtze River‐Jianchuan Lake‐Erhai Lake to the Red River. Schizothorax in the Beipan River were derived from the Jinsha River.     

Testing the role of the Himalaya Mountains as a dispersal barrier in freshwater gastropods (Gyraulus spp.)

The Himalayas are considered to constitute a biogeographical boundary between the Palaearctic and Oriental regions. However, this mountain range does not form a uniform barrier because several large river valleys deeply cut into the Himalayas, crossing drainage divides and potentially forming dispersal corridors, particularly for freshwater organisms. In the present study, the effectiveness of these corridors is tested for the first time based on molecular data, using the amphi‐Himalayan freshwater gastropod genus Gyraulus as a model group. Based on a broad spatial sampling from the Himalayas and the Tibetan Plateau, phylogenetic analyses were performed using mitochondrial DNA sequence data. The resulting phylogeny shows that northern and southern Himalayan clades are geographically distinct (i.e. they exclusively consist of either northern or southern specimens). This pattern suggests a lack of gene flow across the Himalayas probably at least since the late Pliocene/early Pleistocene. Successful dispersal and/or establishment of gastropods might have been impeded by geographical and ecological features. Instead of direct dispersal across the range, multiple colonizations of regions north and south of the Himalayas from extralimital areas have to be assumed. The Himalayas thus represent a very strong dispersal barrier for freshwater snails, and probably for other taxa as well. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 109 , 526–534.     

Development of twenty-one polymorphic tetranucleotide microsatellite loci for Schizothorax o'connori and their conservation application

Schizothorax o'connori, of the subfamily Schizothoracinae, is an endemic fish in the Yarlung Tsangpo River in Tibet, China. To evaluate the population genetic diversity as a means of devising conservation strategies, a total of 21 polymorphic tetranucleotide microsatellite loci were isolated from S. o'connori using the fast isolation by AFLP of sequences containing repeats (FIASCO) protocol. The characterization of these loci was assessed against a panel of 42 individuals. The number of alleles per locus ranged from 4 to 29 with an average of 17.76. Expected locus-specific heterozygosity and the multilocus Shannon–Wiener diversity index ranged from 0.114 to 0.951 and from 0.280 to 3.131, with an average of 0.851 and 2.338, respectively. The cross-species amplification and applicability of these loci were tested against the two other Schizothorax species from the same river. These microsatellite loci will be valuable for further studies of population genetic diversity and genetic structure, and assessments of the artificial propagation release effect of S. o'connori and other related species.     

Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters?

The conservation of humpback dolphins, distributed in coastal waters of the Indo‐West Pacific and eastern Atlantic Oceans, has been hindered by a lack of understanding about the number of species in the genus (Sousa) and their population structure. To address this issue, we present a combined analysis of genetic and morphologic data collected from beach‐cast, remote‐biopsied and museum specimens from throughout the known Sousa range. We extracted genetic sequence data from 235 samples from extant populations and explored the mitochondrial control region and four nuclear introns through phylogenetic, population‐level and population aggregation frameworks. In addition, 180 cranial specimens from the same geographical regions allowed comparisons of 24 morphological characters through multivariate analyses. The genetic and morphological data showed significant and concordant patterns of geographical segregation, which are typical for the kind of demographic isolation displayed by species units, across the Sousa genus distribution range. Based on our combined genetic and morphological analyses, there is convincing evidence for at least four species within the genus (S. teuszii in the Atlantic off West Africa, S. plumbea in the central and western Indian Ocean, S. chinensis in the eastern Indian and West Pacific Oceans, and a new as‐yet‐unnamed species off northern Australia).     

Molecular phylogeny of the genus Pieris (Ericaceae) with special reference to phylogenetic relationships of insular plants on the Ryukyu Islands

Phylogenetic relationships within the genus Pieris (Ericaceae) were investigated based on the rbcL and matK genes along with five spacer sequences of chloroplast DNA to address questions regarding the phylogeography of the genus in association with insular plants on the Ryukyu Islands. The most parsimonious trees indicated that P. floribunda from eastern North America is a sister taxon to the remaining taxa examined, and suggested that the East Asian taxa examined are monophyletic. A morphologically cohesive group, section Pieris, was revealed to be paraphyletic. Within the East Asian clade, insular endemics from the Ryukyu Islands, Taiwan, and mainland Japan formed a sister group to P. formosa from the Himalayas and southern China. Our data suggest that the insular endemics of the Ryukyu Islands and Taiwan arose via allopatric divergence as a result of a paleogeographical land configuration of a landbridge during the early–middle Pleistocene in the Quaternary Period.     

TAXONOMICAL STUDIES ON ARGIDAE (HYMENOPTERA) OF CHINA— A NEW GENUS AND FIVE NEW SPECIES OF STERIC-TIPHORINAE*

Abstract A key is given for the known Palaearctic and Oriental genera of the family Argidae including a new genus from China. Ortasiceros gen. nov. with five new species, O. nigriceps sp. nov., O. zhengi sp. nov., O. breoicornis sp. nov., O. curvata sp. nov. and O. elevata sp. nov. are described and figured. A new tribe, Ortasicerini trib. nov., is erected for the new genus and Copidocerus Forsius 1921. The type specimens are deposited in the Insect Collection of Central South Forestry University, Zhuzhou, China.     

苹果蓟属,东南亚大陆菊科一新归化属

该文报道了在泰国北部和中国西南部的菊科一个新归化属——苹果蓟属(Centratherum Cass.)。依据所采集的标本,详细描述了该属在东南亚大陆的唯一代表亚种苹果蓟 [Centratherum punctatum Cass. Subsp. fruticosum(S. Vidal)K. Kirkman ex Shih H. Chen, M. J. Wu & S. M. Li],并配以插图。苹果蓟与其所在属的其他种的区别在于该亚种叶片菱形至椭圆形,叶缘具不规则锯齿,先端微尖,总苞片基部硬化,先端无芒。文中还提供了苹果蓟的分布图,并讨论了其可能的传播途径。