A Comparison of Computer-Based Methods for Estimating the Age of Animals

Russian Journal of Marine Biology - The advantages and disadvantages of statistical methods for estimating the age of animals that lack recording structures are discussed in the article. The...     

A Numerical Comparison of Some BAYESian Methods of Estimating a Binomial Parameter

This note considers the optimal and suboptimal sequential and fixed sample size estimation of the unknown binomial parameter, p, for a beta prior distribution for p and under quadratic loss and constant observation cost. A numerical comparison of the methods is presented.     

Molecular Dynamics with Nonadiabatic Transitions: A Comparison of Methods

Abstract

Surface hopping (SH) and density matrix evolution (DME) methods which simulate the dynamics of quantum systems embedded in a classical environments are compared with exact quantum-dynamical calculations. These methods are applied to study the inelastic collisions of a classical particle with a five-level quantum harmonic oscillator. One-dimensional, two-state models representing electronic transitions are also treated. In addition, the methods are applied to the dynamics of a proton in a bistable potential bilinearly coupled to the bath of classical harmonic oscillators. Vibrational spectra calculated by both methods compare well with each other. The SH results are, in general, closer to the results of a full quantum treatment than the corresponding DME values. The DME method breaks down in the case of extended coupling with reflection at low energies.     

A Comparison of the Accuracy, Variability and Speed of Five Different Methods for Estimating Leaf Area

Three analogue- and two microprocessor-based methods for estimatingleaf area were compared for accuracy, variability and speed,on 200 leaf templates of known area and contrasting shape (bipinnatifid,ensiform, elliptic and triangular). The data were analyzed intwo blocks for each shape;     

A Comparison of Methods for Estimating the Activity of the ATP-Sensitive Potassium Channel in Mitochondria Based on the Effect of ATP

Biophysics - Abstract—Two methods for studying the functioning of the mitochondrial ATP-sensitive potassium channel, which plays an important role in cell physiology and especially in cardio-...     

A new species-time method for visual assessment of fishes and its comparison with established methods

Synopsis Relative abundances for 80 species in a fish assemblage were estimated using three visual assessment methods. Results of two species-time methods, the Rapid Visual Census (RVC) of Jones & Thompson (1978) and a new method, the Visual Fast Count (VFC), are compared to the traditional transect method. The VFC is similar to the RVC but it is an attempt to improve: on the quantitative nature of the results. Results from each method were significantly correlated, but important differences between methods were found. With an equal number of replicates both RVC and VFC methods yielded significantly more species than the transect method. Relative abundances estimated by the RVC were significantly different from those determined by either VFC or transect methods, but VFC and transect results were not different. A qualitative similarity index using presence-absence data was calculated and compared among methods. Values ranged from 84.3 to 85.9%, illustrating a consistent level of similarity for the faunas censused regardless of census method. Quantitative similarities (percent similarity), however, ranged from 45.8 to 85.7% and suggest a closer agreement between the transect and the VFC methods than between these methods and the RVC. If transect results are assumed to be the most accurate, the comparison suggests that the VFC method yields more accurate relative abundances than does the RVC. Ranges in percent similarity values calculated within each method (8 replicate samples) were used to compare precision among methods. While transect and RVC scores are slightly more precise (ranges of 3.10% and 2.20% respectively) than the VFC method (range = 4.89%), no method was statistically more precise than another (P<0.001).     

Comparison of Three Methods for Estimating the Number of Entomopathogenic Nematodes Present in Soil Samples

Numbers of Steinernema sp. (CB2B) and S. carpocapsae (Agriotos) exponentially declined after application into a clay loam soil. Over a 35-day sampling period, Steinernema sp. (CB2B) was more persistent than S. carpocapsae (Agriotos). The presence or absence of the second-stage cuticle on the third-stage juveniles (J3) at the time of application did not alter the rate of population decline of Steinernema sp. (CB2B). Nearly all J3 of Steinernema sp. (CB2B) and S. carpocapsae (Agriotos) lost their cuticle within 24 hours of being in soil. Centrifugal flotation recovered the greatest number of nematodes, with a lower variance than either the live bait or Baermann funnel techniques. A strong positive linear relationship was evident between numbers of nematodes present in the soil and the numbers that established in a bait insect. Approximately 40% of Steinernema sp. (CB2B) and 30% of the S. carpocapsae (Agriotos) present in the soil established in Galleria mellonella larvae. The extraction techniques had different efficiencies and gave different relative estimates of persistence for the two species. Persistence and infectivity was best measured using a combination of live bait and flotation techniques.     

A Comparison Between Several Goodness of Fit Tests for Cox's Model

A comparison is made between two approaches to testing goodness of fit of Cox's regression model for survival data. The first approach is based on the inclusion of time dependent covariates, whereas the second one is based on the autocovariance of successive contributions to the derivative of the loglikelihood. It appears that the second test is most appropriate for testing in situations where the structure of the departure from proportional hazards is not known a priori. An approximate expression for the relative efficiency of the two test procedures is presented.     

A Comparison of Multiple Methods for Estimating Parasitemia of Hemogregarine Hemoparasites (Apicomplexa: Adeleorina) and Its Application for Studying Infection in Natural Populations

Identifying factors influencing infection patterns among hosts is critical for our understanding of the evolution and impact of parasitism in natural populations. However, the correct estimation of infection parameters depends on the performance of detection and quantification methods. In this study, we designed a quantitative PCR (qPCR) assay targeting the 18 S rRNA gene to estimate prevalence and intensity of Hepatozoon infection and compared its performance with microscopy and PCR. Using qPCR, we also compared various protocols that differ in the biological source and the extraction methods. Our results show that the qPCR approach on DNA extracted from blood samples, regardless of the extraction protocol, provided the most sensitive estimates of Hepatozoon infection parameters; while allowed us to differentiate between mixed infections of Adeleorinid (Hepatozoon) and Eimeriorinid (Schellackia and Lankesterella), based on the analysis of melting curves. We also show that tissue and saline methods can be used as low-cost alternatives in parasitological studies. The next step was to test our qPCR assay in a biological context, and for this purpose we investigated infection patterns between two sympatric lacertid species, which are naturally infected with apicomplexan hemoparasites, such as the genera Schellackia (Eimeriorina) and Hepatozoon (Adeleorina). From a biological standpoint, we found a positive correlation between Hepatozoon intensity of infection and host body size within each host species, being significantly higher in males, and higher in the smaller sized host species. These variations can be associated with a number of host intrinsic factors, like hormonal and immunological traits, that require further investigation. Our findings are relevant as they pinpoint the importance of accounting for methodological issues to better estimate infection in parasitological studies, and illustrate how between-host factors can influence parasite distributions in sympatric natural populations.     

Assessment of Root System Dynamics of Species Grown in Mixtures under Field Conditions using Herbicide Injection and 15N Natural Abundance Methods: A Case Study with Pea, Barley and Mustard

Two methods were developed and used to study the root system dynamics of two species grown together or separately under field conditions. The first method, based on herbicide injection at different soil depths, was used to determine the rooting depth penetration rate of each species in pea–barley and pea–mustard mixtures. The roots absorbed the herbicide when they reached the treated zone leading to visible symptoms on the leaves which could be readily monitored. The second method used differences in ¹⁵N natural abundance and N concentration between legume and non-legume species to quantify the contribution of each species to root biomass of a pea–barley mixture. Each contribution was calculated using ¹⁵N abundance and N concentration of root mixtures and of subsamples of roots of individual species within mixtures. Both methods can indeed be used to distinguish roots of species in mixtures and thus to study belowground competition between associated species. The use of these methods demonstrated species differences in root system dynamics between species but also significant effects of interactions between species in mixtures. The rooting depth penetration rate was mainly species specific whereas root biomass was dependant on plant growth, allocation of dry matter between shoot and root components and growth factors such as N fertilization. Root biomass of each species may vary therefore with the level of competition between species.     

作物区域试验点区辨力估算方法的比较研究

对三种估算作物区域试验点区辨力方法（变异系数指标法、回归系数指标法和ＡＭＭＩ模型Ｄｊ值法）进行了比较研究,研究表明,三种方法的结论总体上相近,但ＡＭＭＩ模型Ｄｊ值法相对较科学准确。     

A Mathematical Technique for Estimating Blastodisc:Yolk Volume Ratios instead of Egg Sizes

Egg size alone is a poor and misleading variable in life-history studies. A mathematical technique for estimating yolk and blastodisc volume ratios in fishes, a much more meaningful character, is generated from first principles. The technique is demonstrated with an example of early ontogeny in fishes of the genus Lucania (Pisces: Cyprinodontidae). Wild, adult rainwater killifish, Lucania parva, and bluefin killifish, L. goodei, were collected in Florida and transported to the laboratory, where offspring were reared under controlled conditions. Offspring were sampled at the onset of cleavage, for simple measurements of yolk and blastodisc morphology. Application of mathematical equations allowed estimates of yolk and blastodisc volumes in the two species. No significant differences were found in clutch size, blastodisc volume, or egg density; however, significant differences existed in the absolute yolk investments, and blastodisc:yolk volume ratios. These differences in reproductive investment within the genus Lucania are interpreted by the altricial-precocial life-history model as a possible causal mechanism in the evolution of species within this genus. The mathematical equations presented in this study enabled us to partition reproductive investment into components that are more biologically meaningful than simple egg size.     

A Comparison of Cytochemical Methods for the Rapid Evaluation of Microalgal Viability

We compared various rapid methods for the evaluation of cell viability of 30 algal strains from 15 genera using dyes for both light and fluorescence microscopy. Algal strains demonstrated considerable staining specificity. Staining with fluorescein diacetate helps distinguish between living and dead cells and also predicts the physiological state of the unicellular alga.     

A Comparison of Ultrasonication and Soxhlet Methods for DDT Extraction from Soil

The goal of this study was to determine the efficacy of ultrasonication extraction of 1,1,1-trichloro-2,2-bis[p-chlorophenyl]ethane (DDT), 1,1-dichloro-2,2-bis[p-chlorophenyl]ethane (DDD), and 2,2-bis[p-chlorophenyl]1,1-dichloro-ethylene (DDE) residues in soil for the purposes of saving time, minimizing generation of hazardous solvent wastes, and reducing costs associated with monitoring contaminant concentrations at remediation sites. An ultrasonic extraction method was developed for DDT, DDD, and DDE residues in soil, and the efficiency of extraction using an ultrasonic cavitator was compared to the traditional soxhlet method by GC-MS. Un-contaminated soil was spiked with analytes DDT, DDD, and DDE at 0.1,1.0,10.0, and 100.0?mg/ kg. Experiments were performed in triplicate, and recoveries of analytes were determined and statistically compared. Results indicate that ultrasonic extraction is a suitable preparatory method for analysis of DDT, DDD, and DDE residues in soil. For spike concentrations of 1?mg/kg to 100?mg/kg, ultrasonication extraction resulted in recoveries in excess of 80% in all but one case. Most recoveries obtained by ultrasonication extraction were statistically indistinguishable from or slightly lower than recoveries obtained by soxhlet extraction. In addition, the lower temperatures employed in ultrasonication extraction may have reduced the amount of thermal degradation of DDT to DDE, a phenomenon that could occur during soxhlet extraction.     

Comparison of Resubstitution,Data Splitting,the Bootstrap,and the Jackknife as Methods for Estimating Validity Indices of New Marker Tests: A Monte Carlo Study

Estimating the diagnostic efficiency of marker tests on the basis of the training set is an intricate problem of discriminant analysis for which no analytical solution exists. The paper outline the problem, describes various popular estimation procedures and presents the results of computer simulations comparing the estimators with respect to both bias and variance.     

A Comparison Between Different Methods for the Determination of Reduced and Oxidized Glutathione in Mammalian Tissues

In this study, three rapid assay techniques for the determination of glutathione, one enzymatic, one flu-orometric and one newly patented colorimetric method, were compared by measuring reduced (GSH) and oxidized (GSSG) glutathione in guinea-pig heart and liver. The HPLC technique was used as a standard, since it is considered the most reliable assay method. In heart, all methods measured the same levels of GSH (about 1 µmole/g wet tissue), whereas in liver the fluorometric assay gave GSH levels about half as high as those measured by the other methods (about 3 vs. 7 µmoles/g wet tissue). Conversely, the fluorometric assay grossly overestimated GSSG concentration (by 5 to 8 times) in both heart and liver. These results confirm previous doubts about the use of the fluorometric technique for GSSC determination in mammalian tissues and also raise some questions about its use for the measurement of GSH in liver. In this tissue, the GSH concentration determined by the fluorometric method was shown to be inversely correlated with the size of the sample, suggesting the presence of some quenching material.