Why are some animal populations unaffected or positively affected by roads?

In reviews on effects of roads on animal population abundance we found that most effects are negative; however, there are also many neutral and positive responses [Fahrig and Rytwinski (Ecol Soc 14:21, 2009; Rytwinski and Fahrig (Biol Conserv 147:87–98, 2012)]. Here we use an individual-based simulation model to: (1) confirm predictions from the existing literature of the combinations of species traits and behavioural responses to roads that lead to negative effects of roads on animal population abundance, and (2) improve prediction of the combinations of species traits and behavioural responses to roads that lead to neutral and positive effects of roads on animal population abundance. Simulations represented a typical situation in which road mitigation is contemplated, i.e. rural landscapes containing a relatively low density (up to 1.86 km/km²) of high-traffic roads, with continuous habitat between the roads. In these landscapes, the simulations predict that populations of species with small territories and movement ranges, and high reproductive rates, i.e. many small mammals and birds, should not be reduced by roads. Contrary to previous suggestions, the results also predict that populations of species that obtain a resource from roads (e.g. vultures) do not increase with increasing road density. In addition, our simulations support the predation release hypothesis for positive road effects on prey (both small- and large-bodied prey), whereby abundance of a prey species increased with increasing road density due to reduced predation by generalist road-affected predators. The simulations also predict an optimal road density for the large-bodied prey species if it avoids roads or traffic emissions. Overall, the simulation results suggest that in rural landscapes containing high-traffic roads, there are many species for which road mitigation may not be necessary; mitigation efforts should be tailored to the species that show negative population responses to roads.     

Bottom-up and top-down effects in a pre-dispersal seed predation system: are non-predated seeds damaged?

Seed predators that severely affect seed germination rates are well known for many plant species. Here, we hypothesised that due to differences in resource allocation within fruits, seed predation can negatively affect non-predated seeds in infested fruits when predation occurs during fruit maturation (a ‘top-down’ effect). We addressed this question using a system of bruchid beetles on Mimosa trees and we also investigated whether seed quality (nitrogen concentration) affects beetle body mass, which would have implications for adult fitness (‘bottom-up’ effect). To assess spatial variation, bottom-up and top-down effects were investigated in two plant populations. Nitrogen concentration was significantly higher in seeds from non-infested fruits than from infested fruits. This supports the hypothesis that resource allocation may differ between seeds from infested and non-infested fruits. Germination experiments showed that seeds from non-infested fruits germinated better than non-predated seeds from infested fruits. It was also confirmed that seed quality affected bruchid body mass. There was also evidence that more resources were taken from well-developed seeds. These results showed that seed predation can damage non-predated seeds.     

Denatured bactericidal proteins: Active per se,or reservoirs of active peptides?

According to the structure-to-function paradigm proteins fold into a 3D structure for exerting their functions. Intrinsically destructured proteins with important biological functions have been identified and studied, but they assume a structure when interacting in the cell with their partners. There are instead bactericidal proteins, endowed also with other diverse activities (glycoside hydrolases, RNases, a defensin), which are lost when the proteins are denatured or inactivated, whereas the bactericidal activity is surprisingly conserved.The hypothesis is advanced that these proteins are not bactericidal per se, but because they store in their amino acid sequences peptide segments that display bactericidal activity when cut out as free peptides from the proteins. These bactericidal proteins would thus be merely containers of bactericidal peptides.     

Herd size in large herbivores: encoded in the individual or emergent?

In large mammalian herbivores, the increase of group size with habitat openness was first assumed to be an adaptive response, encoded in the individual. However, it could, alternatively, be an emergent property: if groups were nonpermanent units, often fusing and splitting up, then any increase of the distance at which animals perceive one another could increase the rate of group fusion and thus mean group size. Dynamical models and empirical data support this second hypothesis. This is not to say that adaptive modifications of mean herd size cannot occur. However, this changes the way in which we can envisage the history of gregariousness in large herbivores during the Tertiary.     

Why do plants abort so many developing seeds: bad offspring or bad maternal genotypes?

It has been suggested that abortion of ovules in perennials is caused partly by early acting genetic load (abortions due to ‘bad offspring’). However, it is still unclear what proportion of abortions of naturally pollinated seeds are due to early genetic load. Here we suggest that variation between maternal genotypes (abortions due to ‘bad maternal genotypes’) may be an even more important factor causing genetic abortions than early load, based on results from Scots pine. The early load is severe in Scots pine: in experimental self-pollinations on average 76% of the seeds were aborted. Comparison of naturally pollinated and experimentally cross-pollinated seeds showed that the abortion rate of naturally pollinated seeds was only slightly, and not statistically significantly, higher than that of experimentally cross-pollinated seeds (30% vs. 26.5%, respectively). Thus, although early load can be high under self-pollination in Scots pine, it does not account for a high share of abortions of naturally pollinated seeds. Instead, maternal genotype determined the seed abortion rate: in a separate experiment using an experimental population (clonal stand), 29% of the total variance in seed abortion was due to variation between maternal genotypes. We studied further whether ‘bad maternal genotypes’ could be explained by trade-offs between seed abortion and other fitness functions. Only one statistically significant genetic correlation was found, a positive association between cone production and successful seed development. Thus ‘bad maternal genotypes’ aborted a higher proportion of their seed and produced less cones than the ‘good maternal genotypes’. This revised version was published online in July 2006 with corrections to the Cover Date.     

Why are shrews so small? The costs and benefits of small size in northern temperateSorex species in the context of foraging habits and prey supply

This paper reviews the ecological advantages and disadvantages of very small body size inSorex Linnaeus, 1758 shrews living at high latitudes with cold winters. It examines the feeding and foraging habits of small and large shrews in the context of prey supply, location of winter prey sources, territory requirements, habitat exploitation and inter-specific competition. Data on feeding habits and prey availability show that the major costs of small size are a reduction in food niche breadth and prey biomass resulting from restrictions on the type and size of prey eaten, and large territory requirements. Major benefits of small size are the ability to subsist on small, numerous and accessible arthropods with high encounter rates, enabling coexistence with larger congeners and exploitation of low-productivity habitats less suitable for larger earthworm-eating species. Small size, coupled with low per capita food intake, is shown to be of special adaptive value in cold winters when food supply is restricted mostly to small arthropods, and earthworms are few.     

Vertical stratification of feeding by Japanese beetles within linden tree canopies: selective foraging or height per se?

Adult Japanese beetles, Popillia japonica Newman (Coleoptera: Scarabaeidae), tend to aggregate and feed most heavily in the upper canopy of host plants, defoliating them from the top down. We examined characteristics of linden (Tilia cordata L.) foliage from different canopy zones and tested two hypotheses that might account for vertical stratification of feeding by this vagile, polyphagous folivore. In the field, P. japonica caused 4–12 times more damage to upper canopy leaves in full sunlight than to lower canopy leaves in sun or shade. However, this within-tree pattern apparently cannot be explained by differences in nutritional parameters (protein, water, and sugar content) or defensive properties (toughness, tannins) of leaves. Furthermore, beetles did not discriminate between foliage from different canopy zones in laboratory choice tests, nor were fecundity or longevity higher for beetles fed upper canopy, sun-exposed leaves. Clonal grape plants suspended from vertical posts in the field at 3.65, 1.83 or 0 m above ground showed a top-down defoliation pattern identical to that seen in linden trees. This suggests that the height of foliage per se strongly affects initial orientation and attack by P. japonica. Recent related studies have shown that both sexes of P. japonica are strongly attracted to host volatiles induced by feeding of conspecific beetles. We suggest that Japanese beetles begin to feed in the upper canopy for reasons unrelated to host nutritional variation (e.g., behavioral thermoregulation, visual orientation to the host silhouette), and that top-down defoliation follows as additional beetles are attracted to feeding-induced volatiles acting as aggregation kairomones.     

A practical question based on cross-platform microarray data normalization: are BOEC more like large vessel or microvascular endothelial cells or neither of them?

Since the available microarray data of BOEC (human blood outgrowth endothelial cells), large vessel, and microvascular endothelial cells were from two different platforms, a working cross-platform normalization method was needed to make these data comparable. With six HUVEC (human umbilical vein endothelial cells) samples hybridized on two-channel cDNA arrays and six HUVEC samples on Affymetrix arrays, 64 possible combinations of a three-step normalization procedure were investigated to search for the best normalization method, which was selected, based on two criteria measuring the extent to which expression profiles of biological samples of the same cell type arrayed on two platforms were indistinguishable. Next, three discriminative gene lists between the large vessel and the microvascular endothelial cells were achieved by SAM (significant analysis of microarrays), PAM (prediction analysis for microarrays), and a combination of SAM and PAM lists. The final discriminative gene list was selected by SVM (support vector machine). Based on this discriminative gene list, SVM classification analysis with best tuning parameters and 10,000 times of validations showed that BOEC were far from large vessel cells, they either formed their own class, or fell into the microvascular class. Based on all the common genes between the two platforms, SVM analysis further confirmed this conclusion.     

Why do the numbers of laboratory animal procedures conducted continue to rise? An analysis of the Home Office Statistics of Scientific Procedures on Living Animals: Great Britain 2005

The publication of the Statistics of Scientific Procedures on Living Animals: Great Britain 2005 once again provides evidence that the levels of animal experimentation in Great Britain are rising, the underlying reason for this being the continued and increasing reliance on genetically modified animals as model systems. There has been a gradual increase in fundamental research, as applied toxicological studies have declined. Of particular concern is the impact that the forthcoming REACH legislation will have and the apparent lack of urgency in facing up to this challenge. The major issues arising from the Statistics are discussed, including the increases in rabbit and primate procedures. The potential of newly validated and emerging techniques to counteract these worrying trends are also considered.     

Conservation of Borneo biodiversity: do small lowland parks have a role,or are big inland sanctuaries sufficient? Brunei as an example

Borneo, the World’s fourth largest island, represents a continental mass sandwiched between volcanic arcs. Patterns of tree species richness, here proposed as proxy for overall biodiversity, and endemism within the island are described and interpreted with special reference to Dipterocarpaceae. Most of Borneo’s surface is sedimentary shales, mostly inland, and sandstones, mostly coastal, deposited in past epicontinental seas. The shales mainly support the regional West Malesian (Sundaland) tree flora, while the Neogene coastal hills, especially in the north-west, support the richest communities which are also richest in endemics. The forests of these hills, which include the richest tree communities in the Old World and are therefore of global significance, are accessible and critically endangered. Priorities for their future management are outlined.     

Maturation at a young age and small size of European smelt (<Emphasis Type="Italic">Osmerus eperlanus</Emphasis>): A consequence of population overexploitation or climate change?

Age of fish at maturation depends on the species and environmental factors but, in general, investment in growth is prioritized until the first sexual maturity, after which a considerable and increasing proportion of resources are used for reproduction. The present study summarizes for the first the key elements of the maturation of European smelt (Osmerus eperlanus) young of the year (YoY) in the North-eastern Gulf of Riga (the Baltic Sea). Prior to the changes in climatic conditions and collapse of smelt fishery in the 1990s in the Gulf of Riga, smelt attained sexual maturity at the age of 3–4 years. We found a substantial share (22%) of YoY smelt with maturing gonads after the collapse of the smelt fisheries. Maturing individuals had a significantly higher weight, length and condition factor than immature YOY, indicating the importance of individual growth rates in the maturation process. The proportion of maturing YoY individuals increased with fish size. We discuss the factors behind prioritizing reproduction overgrowth in early life and its implications for the smelt population dynamics.