Molecular phylogeny and divergence dates for Australasian elapids and sea snakes (hydrophiinae): evidence from seven genes for rapid evolutionary radiations

One of the most prolific radiations of venomous snakes, the Australo-Melanesian Hydrophiinae includes approximately 100 species of Australasian terrestrial elapids plus all approximately 60 species of viviparous sea snakes. Here, we estimate hydrophiine relationships based on a large data set comprising 5800 bp drawn from seven genes (mitochondrial: ND4, cytb, 12S, 16S; nuclear: rag1, cmos, myh). These data were analysed using parsimony, likelihood and Bayesian methods to better resolve hydrophiine phylogeny and provide a timescale for the terrestrial and marine radiations. Among oviparous forms, Cacophis, Furina and Demansia are basal to other Australian elapids (core oxyuranines). The Melanesian Toxicocalamus and Aspidomorphus group with Demansia, indicating multiple dispersal events between New Guinea and Australia. Oxyuranus and Pseudonaja form a robust clade. The small burrowing taxa form two separate clades, one consisting of Vermicella and Neelaps calanotus, and the other including Simoselaps, Brachyurophis and Neelaps bimaculatus. The viviparous terrestrial elapids form three separate groups: Acanthophis, the Rhinoplocephalus group and the Notechis-Hemiaspis group. True sea snakes (Hydrophiini) are robustly united with the Notechis-Hemiaspis group. Many of the retrieved groupings are consistent with previous molecular and morphological analyses, but the polyphyly of the viviparous and burrowing groups, and of Neelaps, are novel results. Bayesian relaxed clock analyses indicate very recent divergences: the approximately 160 species of the core Australian radiation (including sea snakes) arose within the last 10 Myr, with most inter-generic splits dating to between 10 and 6 Ma. The Hydrophis sea snake lineage is an exceptionally rapid radiation, with > 40 species evolving within the last 5 Myr.     

The potential implications of rainforest history, hybridization, and climate change on the phylogenetics of a rare genus of herbs Romnalda (Dasypogonaceae) from New Guinea and Australia

There are many genera shared between Australian and Papua New Guinean rainforests. Species in the rare rainforest herbaceous genus Romnalda have a relictual and disjunct distribution within the major rainforest blocs of southern Queensland, north Queensland, and New Guinea. There are only four species in this genus: R. strobilacea , R. grallata , and R. sp. 'Cooper Ck' from Australia, and R. papuana from New Guinea. The Australian species have restricted distributions and high conservation status. Allozymes were used to study the genetic variation and distinctiveness of all four species. Genetic diversity varied significantly amongst the four species. The species in the centre of the genus distribution contained the highest genetic diversity, regardless of rarity. The undescribed R. sp. 'Cooper Ck' was identified as a clearly distinct species with morphological affinities to R. papuana , but genetic affinities to R. grallata. The study showed that, where the distributions of R. grallata and R. sp. 'Cooper Ck' overlapped, there was evidence of hybridization. Reproductive participation within populations was typically low with limited flowering synchrony. Populations of all four species were inbred, but higher levels of inbreeding were not correlated with lower genetic diversity. The timing of flowering appeared to be determined by climate. Altitudinal variation in phenological timing in R. sp. 'Cooper Ck' has led to genetic isolation within the species, but has also limited its genetic introgression with the co-occurring R. grallata . © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 157 , 455–474.     

Australiformis semoni (Linstow, 1898) n. gen., n. comb. (Acanthocephala: Moniliformidae) from marsupials of Australia and New Guinea

Australiformis n. gen. is erected for Echinorhynchus (Gigantorhynchus) semoni Linstow, 1898, from Australian and New Guinea marsupials. The new genus differs from Moniliformis and Promoniliformis in lacking spiral muscles in the outer wall of the proboscis receptacle. Linstow's species, E. semoni, is redescribed from abundant material from Peramelidae and Dasyuridae from Australia and New Guinea.     

Recognition of the genus Hoplosaenidea Laboissière in Australia, with a key to the Australian genera of Galerucini (Coleoptera: Chrysomelidae: Galerucinae)

Abstract The south-east Asian genus Hoplosaenidea Laboissière is recognised in Australia for the first time, with a single species, scutellata sp. n., occurring in north Queensland and New Guinea. A key is provided for identification of the Australian genera of Galerucini.     

Notes on the Australian sea-snake Ephalophis greyi M. Smith (Serpentes:Elapidae, Hydrophiinae) and the origin and classification of sea-snakes

The type and two other specimens of Ephalophis greyi are described. The venom gland musculature is of the Demansia type, with an isolated muscle running from the quadrate to the rear of the venom gland. The only other hydrophiine with the Demansia pattern of venom gland musculature, Hydrophis mertoni Roux, is referred, for this and other reasons, to the genus Ephalophis as E. mertoni (Roux). Some notes on a skull of E. mertoni are presented, along with a revised diagnosis of Ephalophis. The Demansia pattern of venom gland muscles seen in Ephalophis is primitive for the Hydrophiinae and other members of that subfamily have secondarily taken on a Glyphodon type of musculature of the venom gland by loss of the muscle slip from quadrate to gland. The Demansia group of terrestrial elapids, particularly the genus Drepanodontis Worrell, stand close to the origin of the Hydrophiinae. A classification of the Hydrophiinae into three generic groups is presented, with Ephalophis, Aipysurus , and Emydocephalus referred to an Aipysurus group.     

Plumage based classification of the bowerbird genus Sericulus evaluated using a multi-gene, multi-genome analysis

Past classifications of taxa within the bowerbird genus Sericulus (family: Ptilonorhynchidae) conflict since the discovery of hybrids identified though male plumage characteristics. We use molecular data to help define species within this genus, and by estimating a phylogeny, test for lability in the evolution of male plumage patterns. Because this genus includes the most brightly colored bowerbird species, and is hypothesized to be the basal genus of the avenue building bowerbird clade, the organization of the four taxa within this genus is especially important in understanding how bowerbird plumage coloration evolved. Analyses of two mitochondrial and six nuclear gene regions confirm the basal placement of Sericulus in the avenue building bowerbirds and Sericulus monophyly, and suggests the Australian S. chrysocephalus is the basal Sericulus species. Our analysis additionally supports the existence of three New Guinea Sericulus species, contrary to some previous plumage based classifications, as they are genetically equidistant from each other. Molecular and geographic data of New Guinea are consistent suggesting a series of speciation events starting approximately 3.7-4.3MYA leading to four extant Sericulus species. The absence of resolution within the New Guinea species precludes any statements of trait lability, but does suggest that traits under high selection pressures may not accurately indicate species level distinctions within this genus.     

Musaespora,a genus of pyrenocarpous lichens with campylidia,and other additions to the foliicolous lichen flora of New Guinea

Abstract: The new lichen genus Musaespora is described from Java and Papua New Guinea. It is the first known pyrenocarpous lichen genus with campylidia, and appears to belong to the Aspidotheliaceae. Three species are described, two foliicolous species from Papua New Guinea and one corticolous species from Java. In addition, a list is given of the foliicolous lichen flora of the site in Papua New Guinea, where the foliicolous Musaespora species have been found, two more new foliicolous species are described, Echinoplaca hispida and Sporopodium lucidum, and 19 species are recorded for the first time form Papua New Guinea.     

世界蜘蛛的分布格局及其多元相似性聚类分析

蜘蛛是一类种类繁多、数量巨大、分布广泛的捕食性生物。至2012年底,全世界共有蜘蛛43678种（包括亚种）,隶属于112科3898属。科、属、种3个分类阶元的分布域非常悬殊,90%的种分布在一个界内,90%的科是跨界分布或全球分布。按行政区域,亚洲种类较多,欧洲较少,南极洲没有蜘蛛记录;按动物地理区域,古北界和新热带界较多,新北界较少。根据地理条件、生态条件和蜘蛛的分布状况,将全球陆地分为53个基础地理单元,用申效诚等新近提出的相似性通用公式和据此创立的多元相似性聚类分析方法,分别对属、种两级的分布进行分析,得到两个聚类结构相同、聚类关系合理的支序图,而且属级的支序图层次更为分明,在相似性水平为0.32时,53个基础地理单元聚为17个小单元群,在0,22水平上,又聚为8个大单元群。这些大、小单元群的组成单元地域相邻相连,生态条件相对一致,可以作为蜘蛛地理区划的界、亚界两个层级。和华莱士主要以哺乳动物建立的世界动物地理区划相比,主要差异是：1、古北界东、西两部分差异显著,可分设两界;2、新西兰和澳洲大陆相似性较低,可单独设界;3、新几内亚和太平洋岛屿与澳洲大陆的关系远于和东洋界的关系,华莱士线在两界间的作用似乎不存在; 4、新热带界的中美地区似乎属于新北界更为合适,并由此产生了南北美洲间的紧密联系;5、新北界与古北界的相似性关系弱于与新热带界的关系,全北界的概念几近消失。前两点差异可以从地球板块构造的变动得到解释,第3、5个差异已在植物和其它生物类群得到佐证,第4个差异尚不稳定,需要更多类群的比较与分析。使用多元相似性聚类分析方法对于如此典型的点状分布的生物类群和如此海量的数据,能够得到如此精细的,既符合地理学、统计学的逻辑,又符合生物学、生态学逻辑的定量分析结果,这在国内外都是首次成功尝试,其简便性和合理性将会促使在其它类群中的应用。     

The ant-parasitic genus Rhipipalloidea Girault (Hymenoptera: Eucharitidae), with a description of a new species

The genus Rhipipalloidea Girault (1934 ), from the Australian region is revised. Rhipipalloidea gruberi Girault (1940 ) is synonymised with R. mira Girault 1934 . A new species, R. madangensis , is described from Papua New Guinea. This species is separated from R. mira from Australia by the distinct striation on the head, and ramose, 12-segmented antennae of the females. Males and a host for the genus are described for the first time.     

Revision of the termite family Rhinotermitidae (Isoptera) in New Guinea

Recently, we completed a revision of the Termitidae from New Guinea and neighboring islands, recording a total of 45 species. Here, we revise a second family, the Rhinotermitidae, to progress towards a full picture of the termite diversity in New Guinea. Altogether, 6 genera and 15 species are recorded, among which two species, Coptotermes gambrinus and Parrhinotermes barbatus, are new to science. The genus Heterotermes is reported from New Guinea for the first time, with two species restricted to the southern part of the island. We also provide the first New Guinea records for six species of the genera Coptotermes and Schedorhinotermes. We briefly describe soldiers and imagoes of each species and provide a key based on soldier characters. Finally, we discuss the taxonomic and biogeographical implication of our results. A replacement name, Schedolimulus minutides Bourguignon, is proposed for the termitophilous staphylinid Schedolimulus minutus Bourguignon, to solve a question of secondary homonymy.     

From the inside out: Discovery of a new genus of threadsnakes based on anatomical and molecular data,with discussion of the leptotyphlopid hemipenial morphology

The systematics of Leptotyphlopidae is historically controversial mostly due to their conserved external morphology in comparison with other snakes. However, recent studies have stressed that anatomical data might be informative for clarifying the leptotyphlopid taxonomy and evolution. We erect a new genus to accommodate Leptotyphlops collaris based on evidence from osteology, hemipenial morphology, and molecular data. We also provide expanded data regarding the intraspecific variation based on additional specimens collected in field trips and literature data, performing detailed comparisons among the new genus and all other New World leptotyphlopids. The new genus is distinguished from other leptotyphlopids by its unique hemipenial morphology and its exclusive combination of osteological and external morphology characters, with molecular data also supporting the new generic arrangement. We also provide a comprehensive discussion of the hemipenial morphology for the subfamily Epictinae based on literature and novel data gathered herein.     

Anzygina, a new genus for some Australasian microleafhopper species formerly placed in the genus Zygina Fieber (Cicadellidae: Typhlocybinae: Erythroneurini)

Species of Erythroneurini (Cicadellidae: Typhlocybinae) currently placed in the genus Zygina and found in Australia, New Zealand and some neighbouring islands are transferred to the new genus Anzygina , type species Erythroneura sidnica Kirkaldy, following comparison with the type species of the genus: Typhlocyba nivea Mulsant and Rey. New combinations are Anzygina sidnica (Kirkaldy), Anzygina honiloa (Kirkaldy), Anzygina melanogaster (Kirkaldy) and Anzygina sativae (Evans) from Australia, Anzygina toetoe (Cumber), Anzygina agni (Knight), Anzygina dumbletoni (Ghauri) and Anzygina ramsayi (Knight) from New Zealand, Anzygina zealandica (Myers) from Australia and New Zealand, Anzygina jowettae (Knight) from Norfolk Island and Anzygina medioborealis (Ghauri) from Papua New Guinea. Lectotypes are designated for Erythroneura honiloa Kirkaldy and E. sidnica Kirkaldy. Anzygina billi sp.n. is described from SE Qld, and Anzygina barrattae sp.n. is described from the South Island of New Zealand. A. agni is a new record for Australia and is presumed to be Australian in origin. A. dumbletoni has a distribution which suggests that it also is introduced to New Zealand although its origins are not known. A. ramsayi, A. barrattae and A. toetoe , all of which appear to be New Zealand endemics, show affinity with each other based on aedeagal structure. A key to these species, based on males, is provided. The lack of male syntypes for Erythroneura honiala Kirkaldy and Erythroneura lubra Kirkaldy precludes establishment of their identities relative to other species of the genus, and both names are regarded as having nomen dubium status. Australian species not transferred to Anzygina are Zygina evansi (Ross) and Zygina ipoloa (Kirkaldy), both of which belong elsewhere.     

Phylogeny of Australasian venomous snakes (Colubroidea, Elapidae, Hydrophiinae) based on phenotypic and molecular evidence

Scanlon, John D. & Lee, Michael S. Y. (2004). Phylogeny of Australasian venomous snakes (Colubroidea, Elapidae, Hydrophiinae) based on phenotypic and molecular evidence. — Zoologica Scripta , 33 , 335–366.
Phylogenetic relationships among Hydrophiinae (Australasian and marine elapid snakes) are inferred using 87 characters from external, skeletal, hemipenial and internal anatomy, ecology, and chromosomes as well as available sequences of two mitochondrial genes (cytochrome b and 16S rRNA). Parsimony analysis of the combined data retrieves many widely accepted clades; while observed bootstrap or branch (Bremer) support for these is often weak, most have never been corroborated previously by a rigorous numerical analysis. Sea kraits ( Laticauda ) and Solomon Islands elapids are basal to the remaining hydrophiines (Australian terrestrial forms and hydrophiin sea snakes). The latter clade includes three main lineages: a large-bodied oviparous lineage, a small-bodied oviparous lineage, and a viviparous lineage (which also includes the hydrophiin sea snakes, strongly reaffirmed as monophyletic). While the Solomons retain a relictual fauna, New Guinea has less endemism and has been invaded multiple times by Australian lineages, so there is no clear 'stepping stone' pattern supporting a northern (Asian, rather than Gondwanan) biogeographical origin.     

MtDNA phylogeny and biogeography of Copelatinae, a highly diverse group of tropical diving beetles (Dytiscidae)

Copelatinae is a diverse lineage of diving beetles (Dytiscidae) frequently encountered in wet tropical and subtropical forests, but phylogenetic relationships are very poorly understood. We performed a phylogenetic and biogeographic analysis of this worldwide distributed group based on 50 species including a representative sample of major taxonomic groups and biogeographical regions. DNA sequences were obtained for the mitochondrial genes cytochrome oxidase I, cytochrome b, and 16S rRNA, for a total of 1575 aligned nucleotide positions. We found Copelatinae to be monophyletic, placed in a derived position and not sister to all remaining dytiscids, as had been suggested by earlier authors. The largest genus, Copelatus with some 460 known species was paraphyletic with respect to the smaller genera Lacconectus and Aglymbus. Among the major lineages of Copelatus, the subgenus Papuadytes was consistently recovered as sister to all other species (including Lacconectus and Aglymbus) with the possible exception of two western Palearctic taxa. We propose that the subgenus Papuadytes is removed from Copelatus and assigned generic status. Likewise, the two western Palearctic Copelatus are removed from this genus, and assigned the available genus name Liopterus. Our best phylogenetic hypothesis retrieved Afrotropical and New Guinean plus Australian species of Copelatus as monophyletic. Asian species were paraphyletic with respect to a species from Sulawesi which grouped with the species from New Guinea. Asian species were also paraphyletic with respect to Oriental Lacconectus, which was grouped with a clade of Neotropical species. Neotropical Copelatus form at least two separate lineages. The biogeographical evolution of Papuadytes is consistent with the relative age of the landmasses in the Austral region. Basal species are Australian, and successively derived ones are from New Caledonia and New Guinea. One species apparently dispersed from New Caledonia to China. Assuming a molecular clock and using a standard calibration of 2% divergence/MY the origin of Copelatinae is estimated to be between 85 and 95 MY.     

Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea mountain range (Coleoptera, Curculionidae)

Riedel, A., Daawia, D. & Balke, M. (2009). Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea mountain range (Coleoptera, Curculionidae).— Zoologica Scripta, 39 , 63–74.
Trigonopterus is a little-known genus of flightless tropical weevils. A survey in one locality, the Cyclops Mountains of West New Guinea, yielded 51 species, at least 48 of them undescribed. In this study, we show that mtDNA sequencing, or DNA barcoding, is an effective and useful tool for rapid discovery and identification of these species, most of them morphologically very difficult to distinguish even for expert taxonomists. The genus is hyperdiverse in New Guinea and different species occur on foliage and in the litter layer. Morphological characters for its diagnosis are provided. Despite their external similarity, the genetic divergence between the species is high (smallest interspecific divergence 16%, mean 20%). We show that Trigonopterus are locally hyperdiverse and genetically very strongly structured. Their potential for rapid local biodiversity assessment surveys in Melanesia is outlined (α-diversity); providing a regional perspective on Trigonopterus diversity and biogeography is the next challenge (β-diversity).     

Astrosphaeriella Sydow, a misunderstood genus of melanommataceous pyrenomycetes

The genus Astrosphaeriella Sydow has been regarded as a synonym of Microthelia Körber in recent surveys of bitunicate pyrenomycetes. The structure of the ascomata and the presence of trabeculate pseudoparaphyses show that it belongs to the series of melanommataceous pyrenomycetes and is unrelated to the pleosporaceous taxa commonly referred to Microthelia. All taxa which have been referred to Astrosphaeriella, Astrotheca , or Asterotheca are revised and four species accepted: A. aosimensis Hino & Katumoto, A. stellata (Pat.) Sacc., A. trochus (Penzig & Sacc.) D. Hawksw. and A. venezuelensis Barr & D. Hawksw. As circumscribed here, the genus is exclusively tropical, comprising species characteristically occurring on petioles of palms and bamboo culms. Notes on excluded taxa are provided and the new combination Mycomicrothelia inaequalis (Fabre) D. Hawksw. is made.     

Mathevotaenia niuguiniensis n. sp. (Cestoda: Anoplocephalidae: Linstowiinae) from the water-rat Parahydromys asper (Thomas) in Papua New Guinea, with a list of species of Mathevotaenia Akumyan, 1946

A new species of cestode, Mathevotaenia niuguiniensis n. sp. (Anoplocephalidae: Linstowiinae), is described from the hydromyine rodent Parahydromys asper (Thomas) in Papua New Guinea. This is the third species of the genus reported from the Australasian region. The new species differs from all congeners in rodents by having an elongate cirrus-sac, which crosses the osmoregulatory canals and extends into the medulla, compared with a short, ovoid cirrus-sac which does not penetrate into the medulla in congeners. It differs from the known Australian species, M. antechini (Beveridge, 1977) and M. nyctophili (Hickman, 1954), found in dasyurid marsupials and bats respectively, by lacking a complex of anastomosing osmoregulatory canals in each segment. A list of all known species of Mathevotaenia Akumyan, 1946, their host genera, host families and geographical distribution is provided. New combinations proposed in this report are: M. dipodomi (Bienek & Grundmann, 1973) n. comb. (transferred from Schizorchodes Bienek & Grundman, 1973), M. genettae (Ortlepp, 1937) n.comb., M. mephitis (Skinker, 1935) n. comb., M. pedunculata (Chandler, 1952) n. comb., M. wallacei (Chandler, 1952) n. comb. (transferred from Oschmarenia Spasskii, 1951) and M. oedipomidatis (Stunkard, 1965) n. comb. (transferred from Paratriotaenia Stunkard, 1965).