Scale dependence of immigration rates: models, metrics and data

1. We examine the relationship between immigration rate and patch area for different types of movement behaviours and detection modes. Theoretical models suggest that the scale dependence of the immigration rate per unit area (I/A) can be described by a power model I/A = i*Area(zeta), where zeta describes the strength of the scale dependence. 2. Three types of scaling were identified. Area scaling (zeta = 0) is expected for passively dispersed organisms that have the same probability of landing anywhere in the patch. Perimeter scaling (-0.30 > zeta > -0.45) is expected when patches are detected from a very short distance and immigrants arrive over the patch boundary, whereas diameter scaling (zeta = -0.5) is expected if patches are detected from a long distance or if search is approximately linear. 3. A meta-analysis of published empirical studies of the scale dependence of immigration rates in terrestrial insects suggests that butterflies show diameter scaling, aphids show area scaling, and the scaling of beetle immigration is highly variable. We conclude that the scaling of immigration rates in many cases can be predicted from search behaviour and the mode of patch detection.     

Estimation and comparison of changes in the presence of informative right censoring: conditional linear model

A general linear regression model for the usual least squares estimated rate of change (slope) on censoring time is described as an approximation to account for informative right censoring in estimating and comparing changes of a continuous variable in two groups. Two noniterative estimators for the group slope means, the linear minimum variance unbiased (LMVUB) estimator and the linear minimum mean squared error (LMMSE) estimator, are proposed under this conditional model. In realistic situations, we illustrate that the LMVUB and LMMSE estimators, derived under a simple linear regression model, are quite competitive compared to the pseudo maximum likelihood estimator (PMLE) derived by modeling the censoring probabilities. Generalizations to polynomial response curves and general linear models are also described.     

Modeling stochastic and spatial heterogeneity in a human airway tree to determine variation in respiratory system resistance

Asthma is a variable disease with changes in symptoms and airway function over many time scales. Airway resistance (Raw) is variable and thought to reflect changes in airway smooth muscle activity, but just how variation throughout the airway tree and the influence of gas distribution abnormalities affect Raw is unclear. We used a multibranch airway lung model to evaluate variation in airway diameter size, the role of coherent regional variation, and the role of gas distribution abnormalities on mean Raw (Raw) and variation in Raw as described by the SD (SDRaw). We modified an anatomically correct airway tree, provided by Merryn Tawhai (The University of Auckland, New Zealand), consisting of nearly 4,000 airways, to produce temporal and spatial heterogeneity. As expected, we found that increasing the diameter variation by twofold, with no change in the mean diameter, increased SDRaw more than fourfold. Perhaps surprisingly, Raw was proportional to SDRaw under several conditions-when either mean diameter was fixed, and its SD varied or when mean diameter varied, and SD was fixed. Increasing the size of a regional absence in gas distribution (ventilation defect) also led to a proportionate increase in both Raw and SDRaw. However, introducing regional dependence of connected airways strongly increased SDRaw by as much as sixfold, with little change in Raw. The model was able to predict previously reported Raw distributions and correlation of SDRaw on Raw in healthy and asthmatic subjects. The ratio of SDRaw to Raw depended most strongly on interairway coherent variation and only had a slight dependence on ventilation defect size. These findings may explain the linear correlation between variation and mean values of Raw but also suggest that regional alterations in gas distribution and local coordination in ventilation amplify any underlying variation in airway diameters throughout the airway tree.     

Stem diameter in relation to plant water status

An instrument containing a linear variable differential transformer was constructed to obtain continuous, nondestructive measurements of both short term changes in stem diameter and long term growth. In cotton plants, stem diameter, leaf water potential, and leaf relative water content are all closely related to net radiation at the top of the canopy. Leaves from the east and west sides of a plant show slight, but consistent differences in diurnal water potential patterns.     

Mixture models for continuous data in dose-response studies when some animals are unaffected by treatment.

A mixture model is described for dose-response studies where measurements on a continuous variable suggest that some animals are not affected by treatment. The model combines a logistic regression on dose for the probability an animal will "respond" to treatment with a linear regression on dose for the mean of the responders. Maximum likelihood estimation via the EM algorithm is described and likelihood ratio tests are used to distinguish between the full model and meaningful reduced-parameter versions. Use of the model is illustrated with three real-data examples.     

Pulse-driven magnetoimpedance sensor detection of biomagnetic fields in musculatures with spontaneous electric activity

We describe analysis and control of 50S ribosomal subunits by a solid-state 45nm diameter nanopore incorporated in a microfluidic chip. When used as a resistive pulse sensor, translocation of single 50S subunits through the nanopore produces current blockades that have a linear dependence on applied voltage. Introduction of individual subunits into the fluidic channel shows a threshold behavior that allows controlled entry of individual 50S ribosomal subunits. The incorporation of nanopores into a larger optofluidic chip system opens possibilities for electrical and optical studies of single ribosomes in well-defined and rapidly variable chemical environments.     

Size and shape of transverse tubule openings in frog twitch muscle fibers

The openings of transverse tubules in frog twitch fibers are described. The tubules open to the extracellular space by a narrow neck, with an inner diameter of 20 nm. The most peripheral portion of the tubules is tortuous and has a variable diameter. The similarity in size of the openings of T tubules and caveolae and the meandering path of the tubules are sufficient to account for the paucity of observed openings.     

Interpreting changes in stem diameter in rose plants

Sixteen adult rose plants ( Rosa hybrida cv. Sweet Promise) were grown in rockwool in a phytotron. Water uptake was estimated by computing the difference between the rate of nutrient solution supply and the rate of leaching, continuously measured using a high-precision flowmeter. Transpiration was measured using a balance continuously recording the loss of weight in the entire system. Changes in stem diameter were recorded using linear variable differential transducers placed at the base of four developing shoots and on their corresponding basal stems. Changes in stem diameter were related to changes in the water content of 16 plants. The amplitude of shrinkage in daytime stem diameter and daily increase in stem diameter was lower in basal stems. Radial hydraulic resistance to water diffusion in stems seems to be very low and stem reservoirs appear to be very early sensors of water depletion. When the nutrient solution supply was suppressed, the amplitude of the daily increase in stem diameter and transpiration rates were reduced one and one-and-a-half days later, respectively. When water depletion became more severe, stem diameter decreased from one day to another. The amplitude of daily stem shrinkage increased sharply for 6 days after watering was stopped, while the bulk modulus of elasticity of leaves decreased, probably as a result of damage to the cell wall.     

High-performance liquid chromatographic determination of ibuprofen and its major metabolites in biological fluids

A sensitive and selective high-performance liquid-chromatographic assay for ibuprofen and its major metabolites in biological fluids is described. To ensure good chromatographic separation the drug and metabolites were run on a gradient elution system and detected with a variable wavelength detector set at 220 nm. A second, more rapid, isocratic system is also described for the detection of only ibuprofen.     

The Vascular Pattern of Italian Ryegrass (Lolium multiflorum Lam.): 3. The Leaf Trace System, and Tiller Insertion, in the Adult

The leaf trace system in the region of congested internodesat the base of Lolium multiflorum is described. A typical major trace in a leaf consists of a collateral bundlehaving a double bundle sheath and incorporating a certain amountof sclerenchyma. As such a leaf trace is followed down intothe stem it increases in diameter, loses the inner (mestome)bundle sheath, and the xylem becomes associated with xylem transfercells. Lower down, the bundle diameter is reduced although nowit has become amphivasal. The internal xylem only is still associatedwith transfer cells. The proximal portions of the bundle aremuch reduced, transfer cells, mestome sheath, and sclerenchymaare lacking and the now insignificant bundle merges with a lowerleaf trace or some other vascular tissue. Such a bundle in thestem may be in direct contact via bridges with other leaf traces,with the nodal plexus, and with the peripheral plexus that surroundsthe inner leaf trace system. In the base of a typical young plant, approximately one-halfof all leaf traces, including all the median veins, join bundlesfrom the next oldest leaf. Approximately one-third join thenodal plexus, and the remainder variously join bundles fromthe same or next but one oldest leaf to join the peripheralplexus. The differentiation of tiller insertions into the pre-existingmain stem system is highly variable. In a very young tillera number of traces were seen to terminate before the main systemwas reached suggesting basipetal differentiation. The actualconnections made by the tiller traces may occur with any nearbyleaf trace, the nodal plexus, or with the peripheral plexus.Later differentiating leaf traces in a tiller join leaf tracesof the tiller itself. Occasional bundles from secondary tillers by-pass the vasculartissue of the primary tiller to join directly with that of theparent plant. Vascular connections between parent and tiller,although very variable, appear to be totally comprehensive froma functional standpoint.     

Control of soil physical properties and response ofBrassica rapa L. seedling roots

A system was designed, constructed, tested, and used to growBrassica rapa L. seedling roots which were exposed to O₂ concentrations from 0 to 0.21 mol mol⁻¹, water potentials from 0 to −80 kPa, temperatures from 10 to 34°C, and mechanical impedance from 0 to 20.8 kPa. The experimental design was a central composite rotatable design with seven replications of the center point. Measurements were taken of taproot length, taproot diameter at the point of initiation of root hairs (diameter 1), and one cm above the first measurement (diameter 2), and total length and number of first-order laterals. Temperature had the greatest effect on seedling root growth, with linear and quadratic temperature effects significant for all root measurements except taproot diameter 2 which just had a significant linear effect. Water potential had a significant linear effect on lateral length and number of laterals and a significant quadratic effect on taproot diameter 1. Mechanical impedance had a significant effect only on taproot diameter 2. Oxygen was not significant for any root measurement. The mechanical impedance by water potential interaction was significant for taproot length and taproot diameter 1. A temperature optimum was found for taproot length, taproot diameter 1, lateral length, and lateral number, at 26.0, 42.5, 26.5, and 26.4°C, respectively. Taproot diameter 1 had a water potential optimum at −36.5 kPa, whereas taproot diameter 2 had a mechanical impedance optimum at 12.5 kPa. A growth cell designed for this study allows independent control of soil strength, water potential, oxygen concentration, and temperature. Thus, the cell provides the capability which was demonstrated forBrassica rapa L. to grow seedling roots under complete control of the soil physical properties.     

已烯雌酚在人体各器官转移模型的变结构控制

本文通过线性系统极点配置,李雅普诺夫方法研究了已烯雌酚在人体各器官转移模型的变结构控制问题,得到了使系统尽快达到稳定平衡点的变结构控制器．该问题为生物模型综合控制问题的研究奠定了基础．     

鲫鱼寄生车轮虫一新种的研究

本文记述了寄生在鲫鱼(Carassius auratus)体表和鳃上一种新的车轮虫(Trichodina carassii sp.nov.),虫体直径70(54.6—80.4)μm,附着盘直径58(51.6—67.2)μm,齿环直径32(27.0—36.2)μm,齿体25—30个,齿环中央有7—14个旧齿体残余物形成的颗粒结构。大核马蹄形。小核短杆状,在大核一端的外侧,其位置略有变动。口沟390—400°。齿钩镰刀状,齿棘较直,侧面具有若干个缺刻,末端钝圆或平截,近锥体的后方有一个不太明显的小突起。       

Partial purification of centrosomes from Chinese hamster ovary cells

A method for the purification of centrosomes from cultured Chinese hamster ovary cells is described. The centrosomes produced by application of this method show good retention of their intracellular morphology: the centrioles are surrounded by an “osmiophilic halo” containing numerous pericentriolar or satellite bodies. The latter spherical structures are approx. 55 nm in diameter and possess a densely staining central core surrounded by an envelope of lighter material. The number of satellite bodies associated with the centrioles seems variable, as does their spatial disposition within the osmiophilic halo.     

Allometric relationships to estimate seasonal above-ground vegetative and reproductive biomass of Vitis vinifera L

A procedure is described for obtaining allometric regression equations to estimate non-destructively and in a cost-effective manner the current year's above-ground vegetative and reproductive biomass of Vitis vinifera L. Merlot' throughout the growing season. Significant relationships were obtained over a 3-year period (1998-2000) between the dimensions of an individual shoot per vine (i.e. diameter and length) and dry weights of its primary stem, primary leaves and lateral growth. The dry mass of a grape was best estimated from measurements of the basal diameter of the bunch peduncle. Introducing cumulative degree-days as an additional explanatory variable in the equations allowed them to be used irrespective of year and growth stage. Multi-year regressions were used to quantify in detail the seasonal evolution of mature grapevine biomass under the climatic conditions of the Bordeaux area, France, and for differing levels of soil nitrogen.     

A comparison of a mechanical sector and a linear array transducer for ultrasound-guided transvaginal oocyte retrieval (OPU) in the cow

A comparison was made between a linear array and a mechanical multiple angle sector (MAP) transducer for ultrasound-guided transvaginal oocyte retrieval (ovum pick-up, OPU) in the cow. The ovaries of five dairy cows were punctured, in a twice-weekly OPU program lasting for 4 weeks, using two different 5.0-MHz transducers equipped with an identical disposable needle-guidance system. Both ovaries were visualized using each transducer before puncture and the number of follicles with a diameter of less than 5 mm (small) and with a diameter equal to or greater than 5 mm (large) was recorded. Subsequently, one ovary of the pair was punctured guided by the MAP, while the other was punctured using the linear array transducer. During the next puncture session on a given animal, the two systems were switched and used on the alternate ovary in a crossover design. Parameters assessed for each system were: the total number of follicles visualized in each diameter class, and the total number of retrieved oocytes per cow. A significant difference was found for the ability to visualize smaller follicles in favor of the MAP transducer, with an average visualization of 71.6 +/- 30.3 small follicles per cow during the 4-week trial period, compared to 59.8 +/- 25.7 for the linear array transducer (t-test for paired samples, P = 0.007). No differences were found in the visualization of large follicles. A numerically greater number of oocytes were retrieved using the MAP transducer, compared to the linear array, (averages of 14.2 +/- 7.2 versus 7.4 +/- 6.1, respectively), although these differences were not statistically significant. In conclusion, both systems can be effectively used for oocyte retrieval in the cow, however, the MAP transducer demonstrated superior visualization of small follicles.     

视觉系统初级信息加工的一种数学模型——<Ⅰ>模型的空间性质

本文用广义Gabor(EQ)函数作为视觉系统进行初级信息加工的核函数.所谓广义Gabor函数,就是把原始Gabor函数中的一个独立变量扩展到三个(即空间变量从一维推广到二维,再加时间变量),并相应地引入一些参数.本文中EG取二大类形式:各向同性系统中表达式和各向异性系统表达式.当EG取某一特定形式,而且其中参数取某些特定值时,本模型可分别定性描述电生理实验中发现的几种主要感受野类型(Kuffler,Hubel和Wiesel型等).在空间频率域中引入对数变换假设后,EG经付里叶变换后可很好地合成人眼调制传递函数(MTF)     

Fitting piecewise linear regression functions to biological responses

An iterative approach was achieved for fitting piecewise linear functions to nonrectilinear responses of biological variables. This algorithm is used to estimate the parameters of the two (or more) regression functions and the separation point(s) (thresholds, sensitivities) by statistical approximation. Although it is often unknown whether the response of a biological variable is adequately described by one rectilinear regression function or by piecewise linear regression function(s) with separation point(s), an F test is proposed to determine whether one regression line is the optimal fitted function. A FORTRAN-77 program has been developed for estimating the optimal parameters and the coordinates of the separation point(s). A few sets of data illustrating this kind of problem in the analysis of thermoregulation, osmoregulation, and the neuronal responses are discussed.     

Fibrillar and tubular fine structures in the cytoplasm of Entamoeba histolytica (author's transl)]

The electron-microscopical study of conventional fixed and contrasted Entamoeba histolytica-trophozoites from Diamonds monoxenic TTY-medium revealed "thick fibrils" in the vesicular cytoplasm of the parasites. They are 9-14 nm in diameter and are therefore considered to be myosin-like filaments, that are spread mainly in the tail or the uroid of the moving ameba. No association with microfilaments (MF) or other organelles could be observed. During the same investigation microtubules (MT) of variable length are described having a diameter of 35 nm, surrounded by a 19-25 nm wide capsule. They are distributed singly or in bundles with a maximal diameter of 350 nm. Some of the MT were coiled up to a helical shape.