谷氨酸棒杆菌1dh基因的敲除

谷氨酸棒杆菌中ldh基因编码乳酸脱氢酶,可催化丙酮酸转化生成乳酸.利用重叠延伸PCR的方法,获得中间缺失部分序列的dldh基因片段,将其与载体pk 18mobsacB连接,转化大肠杆菌感受态,筛选出阳性转化子后,转化谷氨酸棒杆菌ATCC 13032感受态细胞.分别在卡那霉素抗性平板及10％蔗糖平板上进行两次筛选,利用PCR方法鉴定,成功获得ldh基因缺失的谷氨酸棒杆菌突变株ATCC 13032-(4)ldh.应用荧光定量PCR检测,ATCC 13032-(z)ldh中的ldh基因在转录水平与野生型菌株ATCC 13032相比,相对表达量为O.ldh基因的敲除对菌株的生长造成了一定的影响.     

Cre-LoxP系统在炭疽芽胞杆菌基因敲除中的应用及eag基因的敲除

将Cre-LoxP系统应用于Bacillus anthracis中并成功敲除eag基因.以B.anthracis基因组为模板扩增得到上下游同源臂,联合两端带有LoxP位点的壮观霉素抗性基因片段构建好同源重组载体,转化B.anthracis AP422,通过一系列筛选得到带有抗性标记的重组菌.然后,通过转入Cre重组酶表达质粒,去除抗性标记,得到eag基因缺失的重组菌,并在DNA水平、RNA水甲和蛋白质水半进行了系统的鉴定.最终建立了Cre-LoxP系统在B.anthracis中的应用方法,并成功敲除eag基因.     

鲍曼不动杆菌无痕基因敲除及hcp基因相关功能

[背景]鲍曼不动杆菌耐药严重,基因敲除是研究细菌毒力与耐药的重要方式.但现有的大部分细菌基因敲除方法基于抗生素抗性筛选,导致不适用于多重耐药菌株的基因敲除.[目的]旨在建立一种非依赖于抗生素抗性筛选的方法,用于敲除多重耐药鲍曼不动杆菌基因.[方法]运用同源 重组和自杀载体pMo 130-TelR对亚碲酸钾的抗性,使用两...     

多粘类芽胞杆菌SC2基因敲除体系的建立

摘要:【目的】建立多粘类芽胞杆菌SC2 的基因敲除体系。【方法】利用电转化把温敏型自杀质粒pRN5101导入到多粘类芽胞杆菌SC2中。采用基因重组技术敲除SC2 中的多粘菌素基因E(pmxE),得到突变株SC2-E。利用抗细菌性能检测和高效液相色谱分析合成多粘菌素的能力,来证实pmxE基因是否被敲除。【结果】成功构建了多粘类芽胞杆菌SC2 的基因敲除体系。pRN5101转入SC2后能够在28℃复制,39℃自杀。突变株失去了合成多粘菌素的能力,成功敲除pmxE基因,验证了此体系的可用性。【结论】首次构建了多粘类芽胞杆菌的基因敲除体系,拓展了pRN5101的使用范围,为研究多粘类芽胞杆菌的基因功能提供了高效的遗传操作工具。     

绵羊Myostatin基因敲除载体的构建

根据Myostatin基因突变可导致肌肉量激增而产生"双肌"表型的特点,构建绵羊Myostatin基因置换型敲除栽体.利用LA-PCR技术成功地扩增得到绵羊Myostatin基因同源臂序列,其中同源长臂4.9kb,包括全部的exonl,intronl,exon2及部分启动子和大部分intron2;同源短臂1.1kb,包括部分exon3和31非翻译区序列,将二者连入PloxpⅡ正负筛选敲除骨架载体,利用骨架载体上Neo基因替代Myostatin基因的exon3,从而成功构建专门针对Myostatin第3外显子区域缺失的置换型敲除载体PloxpⅡ-OVIS-MSTN.酶切和测序鉴定证明载体构建正确,为后续获得绵羊Myostatin基因缺失型体细胞株奠定试验基础.     

基因敲除方法及其应用

基因（gene）是核酸分子中储存信息的遗传单位,是指储存有功能的蛋白质多肽链或RNA序列信息及表达这些信息所必需的全部核苷酸序列。基因敲除（Gene knockout）是指借助分子生物学、细胞生物学和动物胚胎学的方法,通过胚胎干细胞这一特殊的中间环节将小鼠的正常功能基因的编码区破坏,使特定基因失活,以研究该基因的功能;或者通过外源基因来替换宿主基因组中相应部分,以便测定它们是否具有相同的功能,或将正常基因引入宿主基因组中置换突变基因以达到靶向基因治疗的目的。基因敲除是揭示基因功能最直接的手段之一。     

一种基于单交换原理的地衣芽孢杆菌基因敲除方法及应用

目的：基于同源单交换原理构建地衣芽孢杆菌基因快速敲除方法,提高基因敲除效率。方法：以地衣芽孢杆菌（Bacillus licheniformis）20085内切纤维素酶基因celb为拟敲除对象,利用重叠PCR技术将celb基因内约500bp片段与氯霉素抗性基因（Cm^r）相连接,经末端单酶切后电转化至B.licheniformis 20085感受态细胞中,仅通过一次同源单交换,将抗性基因Cm^r插入至celb基因内部,实现目的基因的敲除。结果：经过氯霉素抗性筛选和基因组PCR鉴定,成功获得celb基因缺失菌株B.licheniformis 20085Δcelb;发酵验证结果显示,B.licheniformis 20085Δcelb较原始菌株滤纸崩解能力显著降低,其中发酵60h后内切纤维素酶（CMC酶）活力由1.86U/ml降低至0.50U/ml,表明celb基因在地衣芽孢杆菌降解纤维素的过程中起着重要作用。结论：通过重叠PCR技术结合同源单交换原理能够实现地衣芽孢杆菌目的基因的快速敲除,为该菌株甚至其它微生物提供了一种基因功能快速鉴定的手段。     

产酸丙酸杆菌耐酸菌株的选育及其应用

为了解除微生物发酵生产丙酸过程中代谢产物(丙酸)对菌体生长的抑制作用,以实验室保藏的产酸丙酸杆菌(耐30g/L丙酸)为出发菌株P-0,通过丙酸压力筛选获得了一株耐10g/L丙酸的产酸性能良好的菌株P-10,降低了发酵过程中丙酸对菌体生长的抑制作用。菌株P-10做摇瓶发酵,发酵周期168h,丙酸浓度为49.66g/L,产酸速率为0.30g/(L·h),较出发菌株P-0提高了53.04%;7L发酵罐实验表明,菌株P-10发酵周期168h,丙酸浓度为55.63g/L,产酸速率0.33g/(L·h)。同时对菌株P-10做二次接种实验,结果表明,84h为二次接种最适时间段,且84h进行二次接种时,丙酸浓度提高了17.77%,二次接种实验不但有利于有机酸的积累,而且可以提高菌株的产酸能力和耐酸能力;经过选育的菌株P-10具有优良的产酸稳定性,有利于菌种的工业化生产和应用,同时对后续的发酵分离耦合具有重要意义。     

phbC基因敲除对土壤杆菌产可得然胶的影响

本文构建了phbC基因无痕敲除菌株ΔphbC,分析了ΔphbC菌株生长代谢情况和产生的可得然胶在产量、凝胶性质和红外结构的变化。结果显示,ΔphbC菌株在发酵过程中氨基氮消耗情况与野生型菌株一致,在蔗糖消耗方面,ΔphbC菌株与野生型菌株在18 h之后出现显著差异,蔗糖消耗比野生型菌株明显降低。ΔphbC菌株可得然胶产量约24 g/L,相对于野生型菌株降低了45%;胶凝胶强度为812.521 g/cm^2,相对于野生型菌株降低了21%;红外结构与野生型菌株一致,无明显差异。phbC基因不影响菌体生长,不影响可得然胶结构,但是影响可得然胶的合成。     

Growth engineering of Propionibacterium freudenreichii shermanii for organic acids and other value-added products formation

Propionic acid production from glucose was studied using Propionibacterium freudenreichii shermanii. Conditions were optimized for high yields of propionic acid and total organic acids by sequential optimization of parameters like pH, inoculum age, inoculum volume and substrate concentration. Near-theoretical yield (0.54?±?0.023?g/g) was achieved for propionic acid with fermentation of 1% glucose using 20% (v/v) of 48?hr old P. shermanii at 30°C, pH maintained at 5.5. Total organic acid yield under these conditions was 0.74?±?0.06?g/g. The study resulted in achieving 98% and 95% theoretical yields of propionic acid and total organic acids, respectively. Under optimized conditions, along with organic acids, P. shermanii also produced vitamin B12 and trehalose intracellularly, showing its potential to be used as a cell factory.     

一种费氏丙酸杆菌细胞离位转化生产维生素B_(12)的方法

为建立费氏丙酸杆菌的半连续耦合发酵工艺,克服DMB对维生素B_(12)连续发酵的不利影响,考察了费氏丙酸杆菌菌体细胞离位转化合成维生素B_(12)的可行性,优化了其离位转化工艺,确定了最佳的转化时机、转化体系及DMB添加方式,具体如下:当发酵进行至84 h时,将发酵液离心,收集菌体,然后用离心上清液重悬菌体,配成5倍浓度的菌液,加入终浓度为4.5 mg/L的DMB,于30℃条件下转化48 h,维生素B_(12)的产量达到108.06 mg/L,转化效率为2.26 mg/(Lh)。     

低成本绿色循环工艺发酵生产丙酸联产维生素B12

对提取维生素B12后的费氏丙酸杆菌废菌体进行水解处理,考察以菌体水解液作为N源用于丙酸发酵的可行性.利用正交设计得到了提取维生素B12后的废菌体水解优化条件.基于此,构建利用植物纤维床反应器固定化生产丙酸联产维生素B12的低成本绿色循环工艺.结果表明:在4.5L的发酵体系中,单批次总糖质量浓度为200 g/L,发酵进行了5批次共1192h,丙酸生成总量为2 328.75 g,单批次丙酸质量浓度103.50 g/L,丙酸生产效率达0.43 g/(L·h),干菌质量浓度达到19.52 g/L.将菌体注入微好氧发酵罐中发酵获得112.8 mg/L维生素B12.     

Construction of a reporter vector system for in vivo analysis of promoter activity in Propionibacterium freudenreichii

A beta-galactosidase reporter system for the analysis of promoter elements in Propionibacterium freudenreichii was designed. The pTD210 in vivo reporter vector was constructed using a promoterless lacZ gene from Bifidobacterium longum cloned into the pAMT1 plasmid. The utility of the pTD210 reporter vector was demonstrated by an investigation of six predicted promoters in P. freudenreichii. The system produced accurate and reproducible measurements that facilitated both promoter identification and the quantification of promoter activities.     

Efficient transformation system for Propionibacterium freudenreichii based on a novel vector

A 3.6-kb endogenous plasmid was isolated from a Propionibacterium freudenreichii strain and sequenced completely. Based on homologies with plasmids from other bacteria, notably a plasmid from Mycobacterium, a region harboring putative replicative functions was defined. Outside this region two restriction enzyme recognition sites were used for insertion of an Escherichia coli-specific replicon and an erythromycin resistance gene for selection in Propionibacterium. Hybrid vectors obtained in this way replicated in both E. coli and P. freudenreichii. Whereas electroporation of P. freudenreichii with vector DNA isolated from an E. coli transformant yielded 10 to 30 colonies per microg of DNA, use of vector DNA reisolated from a Propionibacterium transformant dramatically increased the efficiency of transformation (> or =10(8) colonies per microg of DNA). It could be shown that restriction-modification was responsible for this effect. The high efficiency of the system described here permitted successful transformation of Propionibacterium with DNA ligation mixtures.     

利用纤维床反应器固定化发酵生产丙酸

构建了一种纤维床反应器(FBB), 并将其应用于丙酸的生产。将棉纤维绕成桶状, 固定于反应器中, 即可用于丙酸固定化发酵。以40 g/L的葡萄糖为碳源, 与游离细胞相比, 利用FBB生产丙酸, 丙酸产量由14.58 g/L提高至20.41 g/L, 发酵时间由120 h缩短至60 h。研究了不同糖浓度条件下FBB生产丙酸情况, 并将补料策略应用于丙酸发酵中。结果表明: 补料发酵能够有效改善Propionibacterium freudenreichii CCTCC M207015在高糖条件下丙酸对葡萄糖转化率较低、副产物较多的问题。经补料发酵280 h, 丙酸产量达45.91 g/L, 丙酸质量约占有机酸总质量比例为72.31%。     

Optimization of propionic acid production in apple pomace extract with Propionibacterium freudenreichii

Abstract

Sequential optimization of propionate production using apple pomace was studied. All experiments were performed in a static flask in anaerobic conditions. Effect of apple pomace as nitrogen source against conventional N sources (yeast extract, peptone) was studied. The double increase was observed in propionic acid production while using yeast extract and peptone (0.29?±?0.01?g/g), as against the use of only apple pomace extract (APE) (0.14?±?0.01?g/g). Intensification of propionic acid fermentation was also achieved by increasing the pH control frequency of the culture medium from 24-(0.29?±?0.01?g/g) to 12-hour intervals (30?°C) (0.30?±?0.02?g/g) and by increasing the temperature of the culture from 30 to 37?°C (12-hour intervals of pH control) (0.32?±?0.01?g/g). An important factor in improving the parameters of fermentation was the addition of biotin to the medium. The 0.2?mg/L dose of biotin allowed to attain 7.66?g/L propionate with a yield of 0.38?±?0.03?g/g (12-hour intervals of pH control, 37?°C).     

利用纤维床反应器固定化发酵生产丙酸

构建了一种纤维床反应器(FBB), 并将其应用于丙酸的生产。将棉纤维绕成桶状, 固定于反应器中, 即可用于丙酸固定化发酵。以40 g/L的葡萄糖为碳源, 与游离细胞相比, 利用FBB生产丙酸, 丙酸产量由14.58 g/L提高至20.41 g/L, 发酵时间由120 h缩短至60 h。研究了不同糖浓度条件下FBB生产丙酸情况, 并将补料策略应用于丙酸发酵中。结果表明: 补料发酵能够有效改善Propionibacterium freudenreichii CCTCC M207015在高糖条件下丙酸对葡萄糖转化率较低、副产物较多的问题。经补料发酵280 h, 丙酸产量达45.91 g/L, 丙酸质量约占有机酸总质量比例为72.31%。     

Acetate oxidation through a modified citric acid cycle in Propionibacterium freudenreichii

Propionibacterium freudenreichii strain DSM 20271 was grown in a mineral medium containing 0.1% (w/v) yeast extract. Acetate was oxidized by growing cells with potassium hexacyanoferrate as electron acceptor, which was oxidized by a three-electrode poised-potential system at a redox potential of +510 mV. Growth with acetate under these conditions followed linear rather than expenential kinetics, whereas growth with other substrates such as lactate under the same conditions was exponential. Cell-free extracts of P. freudenreichii cells grown with acetate contained all enzymes of the classical citric acid cycle except 2-oxoglutarate-oxidizing activity. No activity of anaplerotic reactions such as isocitrate lyase or malate synthase was found. Instead, moderate activities of glutamate decarboxylase, 4-aminobutyrate:2-oxoglutarate aminotransferase, and succinate semialdehyde dehydrogenase were detected. In short-term radiolabeling experiments with U-¹⁴C-acetate, 4-aminobutyrate was identified as a major early intermediate in acetate oxidation by these cells. These findings allow the construction of a modified citric acid cycle that compensates the lack of 2-oxoglutarate dehydrogenase by a subcycle through glutamate, 4-aminobutyrate, and succinate semialdehyde. Lack of anaplerotic reactions explains subexponential growth kinetics during growth with acetate.     

费氏丙酸杆菌费氏亚种生长特性及对致病菌和益生菌作用探讨

目的对1株费氏丙酸杆菌费氏亚种生长特性及发酵代谢物的抑菌和促生长作用进行研究。方法将费氏丙酸杆菌费氏亚种无细胞发酵上清液分别与5株致病菌和3株益生菌添加至24孔板中进行培养,通过测定A_(600 nm)值的变化来研究发酵代谢物的抑菌和促生长作用。结果发酵代谢物中的抑菌成分含量随发酵时间的延长而增加,到第6天后增长趋于平缓。当发酵上清液添加量达到400μL时,溶血性链球菌被完全抑制,达到600μL时,金黄色葡萄球菌、沙门菌、单核细胞增生李斯特菌和大肠埃希菌实验组A_(600 nm)值较对照组分别下降76.1%、68.5%、60.2%和43.9%,而长双歧杆菌和婴儿双歧杆菌实验组A_(600 nm)值较对照组分别上升17.1%和41.5%。结论费氏丙酸杆菌费氏亚种发酵代谢物对5株致病菌均表现出不同程度的抑菌效果,对2株双歧杆菌的生长有较明显的促进作用。