Does spatial distribution of tree size account for spatial variation in soil respiration in a tropical forest?

We explored the relationship between soil processes, estimated through soil respiration (R _soil ), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in R _soil in a tropical forest. The influence of tree size was examined using an index (I _c ) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between I _c and litterfall, root mass and R _soil , respectively. Strong significant relationships were found between I _c and both litterfall and root mass. R _soil showed a large range of variations over the 1-ha experimental plot, from 1.5 to 12.6 g_C m^?2 d^?1. The best relationship between I _c and R _soil only explained 17% of the spatial variation in R _soil . These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution–which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1.30 m above ground level or at 0.5 m above the buttresses)–in explaining spatial variations in R _soil .     

Don’t miss the forest for the trees! Evidence for vertical differences in the response of plant diversity to disturbance in a tropical rain forest

Ecological studies in tropical rain forests traditionally focus on trees above a threshold diameter at breast height (dbh), since ignoring plant species of the other structural compartments is believed to be an acceptable tradeoff between exhaustiveness and effectiveness. However, the consequences of missing species below a threshold dbh value have been largely neglected so far. We evaluated whether the response of species diversity of ≥10-cm dbh trees was similar to the response of other structural ensembles (namely treelets, saplings, and terricolous herbs) in a lowland tropical rain forest, to three disturbance regimes: natural gap dynamics (control), and selective logging with and without additional thinning. We studied forest vegetation composition and diversity in a 20-yr replicated field experiment comprising nine 1 ha permanent plots established in a semi-deciduous rain forest of the Congo Basin and equally distributed among the three treatments. Once corrected by stem density, species richness was similar between logged (20 years since logging) and untouched old-growth forest stands with respect of trees, but higher with respect of treelets. As disturbance intensity increased, species richness increased within sapling layers but decreased within herb layers, while species spatial turnover (beta diversity) increased in both cases. Regarding the parameters of the partitioned rarefaction curves and relative abundance distribution curves, no correlation was found between trees and any of the other structural compartments. Whilst tree and treelet species composition was similar among treatments, the understories still reflected past disturbance intensity, with a strong response of the sapling and herb layers. These results show that ecological studies based solely on tree layers (dbh ≥ 10 cm) are misleading because their response to disturbance cannot be used as a surrogate for the response of other structural ensembles. Long-lasting effects of anthropogenic disturbance on the sapling bank and the herb layer may durably influence the long-term forest dynamics. Since overstory but not understory plant communities have recovered from human disturbances 20 years after silvicultural operations, African tropical rain forest ecosystems may not be as resilient to selective logging as previously thought.     

Do spatial effects play a role in the spatial distribution of desert‐dwelling Acacia raddiana?

Abstract. We investigated the spatial pattern of A. raddiana in the Negev desert of Israel in order to gain insights into the factors and processes driving the dynamics of this species. Using a scale‐dependent measure, the ring statistic, we analysed both patterns observed in the field and time series of spatial tree distributions produced by a simulation model. In the field, random spacing was the predominant pattern observed. However seedlings were clumped on small scales. We ran the model under two contrasting scenarios representing hypotheses that explain the clumping of seedlings and the random distribution of trees. One hypothesis is that there is spatial heterogeneity in seed distribution, germination and seedling mortality, but that these heterogeneities are not correlated with each other in space. The second hypothesis assumes a correlation between these heterogeneities leading to areas suitable for establishment. However, the suitability of the sites is temporally variable. Furthermore, the second hypothesis assumes density‐dependent tree mortality due to competition. Both hypotheses lead to spatial distributions that are in qualitative agreement with the patterns observed in the field. Therefore, the classical view that a clumped seedling distribution and a random pattern of older trees is due to clumped regeneration and density‐dependent mortality may not hold for Acacia trees in the Negev.     

Is the potassium channel distribution in glial cells optimal for spatial buffering of potassium?

Glial cells in the nervous system are believed to reduce changes of extracellular potassium concentration ([K+]o), caused by neural activity, by carrying out spatial buffering of potassium. In the case of retinal glial cells (Müller cells), light-evoked increases of [K+]o within the retina are reduced by K ions flowing through the Müller cell to the vitreous fluid of the eye. We have calculated the optimal way to distribute the potassium conductance of the Müller cell to maximize spatial buffering to the vitreous fluid. The best distribution is with half the potassium conductance in the outer part of the cell, where K+ enters, and half the conductance in the vitreal endfoot, where K+ leaves the cell. This calculated distribution is very different from the actual distribution measured by Newman (1984, Nature [Lond.], 309: 155-157), where only 6% of the Müller cell conductance is in the outer cell and 94% is in the endfoot. The experimentally observed distribution gives less than a quarter of the spatial buffering that would be produced by the optimal distribution. The possible advantages of this arrangement are discussed.     

Asymmetric response of forest and grassy biomes to climate variability across the African Humid Period: influenced by anthropogenic disturbance?

A comprehensive understanding of the relationship between land cover, climate change and disturbance dynamics is needed to inform scenarios of vegetation change on the African continent. Although significant advances have been made, large uncertainties exist in projections of future biodiversity and ecosystem change for the world's largest tropical landmass. To better illustrate the effects of climate–disturbance–ecosystem interactions on continental-scale vegetation change, we apply a novel statistical multivariate envelope approach to subfossil pollen data and climate model outputs (TraCE-21ka). We target paleoenvironmental records across continental Africa, from the African Humid Period (AHP: ca 14 700–5500 yr BP) – an interval of spatially and temporally variable hydroclimatic conditions – until recent times, to improve our understanding of overarching vegetation trends and to compare changes between forest and grassy biomes (savanna and grassland). Our results suggest that although climate variability was the dominant driver of change, forest and grassy biomes responded asymmetrically: 1) the climatic envelope of grassy biomes expanded, or persisted in increasingly diverse climatic conditions, during the second half of the AHP whilst that of forest did not; 2) forest retreat occurred much more slowly during the mid to late Holocene compared to the early AHP forest expansion; and 3) as forest and grassy biomes diverged during the second half of the AHP, their ecological relationship (envelope overlap) fundamentally changed. Based on these asymmetries and associated changes in human land use, we propose and discuss three hypotheses about the influence of anthropogenic disturbance on continental-scale vegetation change.     

Plant response to disturbance in a Mediterranean grassland: How many functional groups?

Abstract. Data referring to changes in vegetation composition resulting from cattle exclosure and ploughing in a Portuguese pasture dominated by annuals were used to test hypotheses regarding the biology of species favoured or eliminated by disturbance in semi-natural herbaceous communities. These hypotheses were tested in two ways. First we compared the distribution of six a priori groups – grasses, small rosettes, large rosettes, small species with leafy stems, large species with leafy stems, legumes – across grazed, ploughed and undisturbed plots. In a second set of analyses we examined changes in the frequencies of individual biological attributes in response to grazing and ploughing. These analyses were carried out separately for grasses and dicot forbs. Overall, the species composition showed little response to either grazing or ploughing, though species dominance changed. This lack of responsiveness of species composition was attributed to the long history of intensive land use which has resulted in the loss of disturbance-intolerant species over entire landscapes. When considering a priori groups, small rosettes were indifferent to disturbance. grazing and ploughing showed that dominated. Large rosettes, large species with leafy stems and legumes were generally intolerant to both grazing and ploughing, though individual species may increase in response to disturbance. Small species with leafy stems were the only group favoured by grazing whereas ploughing favoured grasses. As to individual traits, grazing excluded large grass species with heavy seeds and promoted a flat rosette canopy structure and a small size, along with a moderate dormancy and protected inflorescences. In forbs, grazing favoured small species, as expected, while it excluded tall species, and, in contrast to earlier results, a rosette canopy. These attributes were consistent with responses of the a priori groups, though it would not have been possible to reconstruct groups directly from the attribute list. Ploughing had no effect on any of the forb traits. As to grass traits, flat- and short-statured species increased and heavy-seeded species decreased. Our analysis revealed two advantages of establishing plant functional classifications within life forms. Subgroups within forbs had contrasting types of behaviour. For the same trait patterns could differ within the grass group from within the forb group. Finally, this analysis emphasizes the need for plant functional classifications aiming at the identification of syndromes of co-occurring attributes rather than of lists of isolated traits of which actual combinations are not specified.     

Implications of anthropogenic disturbance factors on the Trichoptera assemblage in a Mediterranean fluvial system: Are Trichoptera useful for identifying land-use alterations?

From autumn 2005 to spring 2008, a study focusing on the collection of Trichoptera larvae was conducted in the catchment of the Guadiamar River (SW Spain). The distribution of caddisfly species in relation with environmental factors was examined. Four groups of species were recognised according to the environmental gradient. A direct ordination analysis (CCA) used to describe assemblage changes among sites corroborated that conductivity, land-use, geomorphological gradient, and temporality were the variables that best explain the Trichoptera distribution, but to establish the relative influence of the land-use variables was difficult. On the other hand, mining pollution appeared to be the main factor explaining Trichoptera community structure. In April 1998 this river system underwent an accidental release of a large mass of toxic mine waste, which exterminated macroinvertebrates in the middle and lower parts and floodplain. Several years later, caddisfly communities in these areas were different from those of unaffected upper reaches. The species assemblage was especially poor in lower river reaches that underwent the permanent, diffuse urban and agricultural pollution. These conditions were tolerated only by Hydropsyche exocellata Duföur.     

Issues affecting the measurement of disturbance response patterns in herbaceous vegetation – A test of the intermediate disturbance hypothesis

The 'intermediate disturbance hypothesis' (IDH) predicts maximum species diversity at intermediate levels of disturbance. Disturbance levels are measured by intensity or frequency of disturbance or by the time since disturbance. The IDH has been tested over a wide range of studies and communities with results either accepting or rejecting the hypothesis. The objectives of this study were to determine how observed disturbance response patterns for the same herbaceous plant community are influenced by modelling techniques, particularly in relation to the expression of disturbance gradients, choice of species diversity indices, and time of assessment since disturbance. Response patterns were examined using a multi-factorial disturbance experiment involving grazing (absent and present); fire (absent and present); soil cultivation (none, 5 and 20 cm); and amendment (none, fertiliser, and fertiliser plus clover seeds). Generalized linear models with a b-spline function were used to define response patterns for five different disturbance gradients over a 24-month period using three indices of diversity. Seven basic disturbance response models were recognized ranging from the classical IDH bell-shaped pattern through increasing or decreasing trends, to a no-change model with increasing levels of disturbance. Only 6.7% of all models were consistent with the IDH. The no-change model was found in nearly half the cases investigated and increased in occurrence with time since disturbance. The choice of the disturbance intensity gradient, the species diversity index used and the time of assessment after disturbance significantly influenced the frequency of occurrence of the disturbance response models observed. Consequently, the responses of vegetation to disturbance gradients show many patterns depending on how they are defined and modelled rather than the simple bell-shaped curve as predicted by the IDH, but the ecological mechanisms supporting some of these patterns need to be further investigated.     

Ruderality in extreme-desert cacti? Population effects of chronic anthropogenic disturbance on Echinocereus lindsayi

Ruderal species, i.e., those that increase their numbers in the presence of disturbance, are not expected to occur in extreme environments. We test whether Echinocereus lindsayi, a cactus from an extreme desert, follows the ruderal trend observed in similar species from mild deserts, or, as theory suggests, it is a non ruderal. Contrary to expectations, its density and fraction of small individuals in the population increased with disturbance. This seemingly results from increased establishment, as it is nursed by rocks exposed by disturbance. A demographic model for two populations, one nearly pristine and another highly disturbed, showed that at the latter site recruitment was more frequent and likely. At the disturbed site the performance of E. lindsayi individuals was usually poor, except on favorable years. Then, competition release caused by disturbance apparently allowed for a better performance compared to the less disturbed site. Despite that this opportunistic behavior would suffice to maintain the population size stable, the large mortality produced by an insect outbreak in two of the four study years caused the population to diminish. In contrast, the population at the less disturbed site was near equilibrium. If the insect outbreak is associated to disturbance, E. lindsayi at the disturbed site would be already experiencing more disturbance than it tolerates. This agrees with the fact that no populations were found at greater disturbance intensities. While, contrary to our hypothesis, E. lindsayi is ruderal, this extreme desert species appears to tolerate far less disturbance than its counterparts from milder areas.     

Resistance to oomycetes: a general role for the hypersensitive response?

Oomycete plant pathogens, such as Phytophthora, downy mildews and Pythium, have devastating disease effects on numerous crop and ornamental plants. Various types of genetic resistance to oomycetes occur in plants, and can be determined at the subspecific or varietal level (race or cultivar-specific resistance), or at the species or genus level (nonhost resistance). In addition, resistance might be a quantitative phenotype (partial resistance). Resistance reactions are often associated with the hypersensitive response – a programed cell death pathway. Recent advances in the genetic, biochemical and cytological characterization of disease resistance suggests that the hypersensitive response is associated with all forms of resistance to Phytophthora and downy mildews. Identification of the resistance genes involved in nonhost and partial resistance to oomycetes remains an important challenge.     

Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?

Replication generates bacterial chromosomes with strands that differ in the number of genes and base composition. It has been suggested that in bacteria such as Bacillus subtilis, PolC is responsible for the synthesis of the leading strand and DnaE for the lagging strand, whereas in many other bacteria DnaE is responsible for the synthesis of both strands. Here, I show that the possession of PolC correlates with leading strands that contain an average of 78% of genes compared with 58% for genomes that do not contain PolC. This suggests that asymmetrical replication forks could have a major role in defining and constraining the structure of the bacterial chromosome. The presence of PolC is not correlated with compositional strand bias, suggesting that the two biases result from different types of structural asymmetry.     

Male orientation to trail sex pheromones in parasitoid wasps: does the spatial distribution of virgin females matter?

We studied male locomotory response to trails and patches of sex pheromone (left respectively by free-ranging females and females constrained to stay on a small area) in the two parasitoids Aphelinus asychis (Hymenoptera: Aphelinidae) and Trichogramma brassicae (Hymenoptera: Trichogrammatidae). Under the hypothesis that the spatial distribution of virgin females differs between these species (scattered among host plants in A. asychis, gregarious at emergence sites in T. brassicae), we predicted that male locomotory response to their sex pheromones should also differ: A. asychis males should follow pheromone trails on plants in order to encounter the females along these trails, whereas T. brassicae males should stay on pheromone patches, at emergence sites, and mate the females on these patches. Using an improved video-tracking system, we found that males of both species respond to conspecific sex pheromone trails and patches, but that the response does not differ much between species. Males released on marked substrates walked in a more convoluted pattern (i.e. higher path fractal dimension and higher number of crossings within tracks) than males released on unmarked substrates. On pheromone patches, males turned persistently in the same direction when leaving the patch, which explains a higher number of visits on marked patches than on unmarked patches, and possibly, higher track convolution on pheromone trails. Contrary to our hypothesis, male A. asychis did not follow female trails more accurately than male T. brassicae, and male T. brassicae did not stay longer on pheromone patches than male A. asychis. We argue that these discrepancies between our predictions and the observed responses originates from discrepancies between the assumed spatial distribution of virgin females and their actual distribution in the wild.     

Why do traditional dispersion indices used for analysis of spatial distribution of plants tend to become obsolete?

It is common to characterize the spatial distribution of plant patterns as random, aggregate, or uniform. In this context, a major challenge for the researcher is the choice of the method to identify the spatial pattern correctly as well as the factors related to it. The vast literature on the subject is not recent, especially regarding the dispersion indices. The aim of this review was to conduct a critical and temporal analysis of these dispersion indices and test their effectiveness in determining the spatial distribution of Paepalanthus chiquitensis Herzog (Eriocaulaceae). This species is a meaningful model due to its occurrence in specific sites. The Lexis, Charlier, dispersion, relative variance, aggregation, Green, inverse of k of the negative binomial, Morisita, and standardized Morisita indices were limited to indicating that the individuals of the species are aggregate and did not provide information on neither spatial dimension (scale) where the aggregation occurs, nor the factors related to this aggregation. Although they have distinct magnitudes, the algebraic expressions of dispersion, relative variance, aggregation, Green, inverse of k, Morisita, and standardized Morisita indices exhibited a close relationship with each other and little progress from their precursors Lexis and Charlier. By disregarding the possibility of spatial dependence, these indices make it impossible to generate important hypotheses for the investigation of factors related to spatial structure. Therefore, they became obsolete and are falling into disuse. It should be noted that these measurements accomplished their role and contributed to science in times of limited technologies for spatial data.     

Refuge or predation risk? Alternate ways to perceive hiker disturbance based on maternal state of female caribou

Human presence in natural environments is often a source of stress that is perceived by large ungulates as an increased risk of predation. Alternatively, disturbance induced by hikers creates a relatively predator‐free space that may serve as a refuge. We measured the behavioral responses of female caribou to disturbance associated with the presence of hikers during summer in the Gaspésie National Park. We used those data to determine whether caribou responded negatively to human activity (i.e., the predation risk hypothesis) or whether human activity resulted in a decrease in the magnitude of perceived risk (i.e., the refuge hypothesis). Female caribou with a calf spent nearly half of their time feeding, regardless of the presence of a trail or the number of hikers. They also decreased their vigilance near trails when the number of hikers increased. Conversely, lone females fed less frequently and almost doubled the time invested in vigilance under the same circumstances. However, both groups of females moved away from trails during the day, especially in the presence of hikers. We demonstrated that risk avoidance was specific to the maternal state of the individual. Lactating females accommodated the presence of hikers to increase time spent foraging and nutritional intake, providing support for the refuge hypothesis. Alternatively, lone females with lower energetic requirements and no maternal investment in a vulnerable calf appeared less tolerant to risk, consistent with the predation risk hypothesis. Synthesis and applications: Hikers influenced the vigilance–feeding trade‐off in caribou, underlining the importance of appropriate management of linear structures and human activities, especially across the critical habitat of endangered species. Even if some individuals seemed to benefit from human presence, this behavioral adaptation was not sufficient to reduce annual calf mortality associated with predation.     

Is the release of phytosiderophores in zinc-deficient wheat plants a response to impaired iron utilization?

The effect of zinc nutritional status on the time course of phytosiderophore release, and uptake of iron and translocation of iron to the shoot, was studied in nutrient solution cultures for two cultivars of wheat ( Triticum aestivum . cv. Aroona: T. durum , cv. Duratit) differing in their susceptibility to zinc deficiency. In the zinc-efficient cultivar Aroona, under zinc deficiency translocation of iron from roots to shoot was significantly decreased in 13- and 15-day-old plants, whereas release of phytosiderophores was enhanced when the plants were 16 days old. As zinc deficiency became more severe in older plains, translocation of iron to the shoot was further decreased and release of phytosiderophores was further enhanced. Resupplying zinc in nutrient solution to zinc-deficient plants significantly increased the translocation of iron to the shoot after 48 and 72 h. Concomitantly the release of phytosiderophores was repressed. The other cultivar Durati classified as zinc-inefficient in field observations differed from cv. Aroona by showing a lower rate of phytosiderophore release under Zinc deficiency, and a less impaired translocation of iron to the shoot. Foliar application of iron citrate to zinc-deficient Aroona plants repressed the release of phytosiderophores and increased iron concentrations in shoot and roots. Application of ⁵⁵Fe to the leaves demonstrated that retranslocation of iron from the shoot to the roots was not affected by the zinc nutritional status. It is concluded that enhanced release of phytosiderophores in zinc-deficient wheat plants was induced primarily by impaired trans-location of iron lo the shoot.     

Does understory vegetation reflect the history of fluvial disturbance in a riparian forest?

We have examined the relationship between the history of fluvial disturbance and understory vegetation in a riparian forest. The study site was divided into three sites, by use of aerial photographs and topographical maps, with different histories of fluvial disturbance: (1) Fagus-type on land that has not been flooded for the last 39 years, at least; (2) Populus-type on land that has not been flooded since debris flow occurred 34 years ago; and (3) Salix-type on land that has been flooded periodically from an abandoned channel since debris flow occurred 34 years ago. Species richness in the Salix-type was significantly higher than in the other types. Detrended correspondence analysis revealed obvious floristic differences among the three canopy types. Canonical correspondence analysis showed that herbaceous species were mainly found on lower plots with high moss cover, implying that moss layers may capture seeds transported by the stream. Tall herbs occurred in less shaded plots and on higher plots, suggesting that their rapid growth prevented the occurrence of other species. Fagus-type was dominated by species with ingested fruits which depended on animals for their dispersal. Populus and Salix-types were dominated by species with wind dispersal or no dispersal mechanism, which depended on physical phenomena for dispersal. Attributes of current understory vegetation were connected with historical events, suggesting that riparian vegetation reflects the history of fluvial disturbance.