林下植被和凋落物对寒温带森林生长季土壤CH4通量的影响

为进一步探究林下植被和凋落物管理对我国寒温带森林生长季土壤CH₄通量的影响,采用静态箱-气相色谱法对大兴安岭北部4种林型（白桦林、山杨林、樟子松林和兴安落叶松林）4种处理（自然状态、去除凋落物、去除林下植被以及去除林下植被和凋落物）的土壤CH₄通量排放特征进行观测研究。结果表明：该地区森林生长季土壤均表现为CH₄的汇,4种林型不同处理后土壤CH₄通量表现为单峰变化趋势,吸收峰值出现在7月或8月。自然状态4种林型土壤CH₄平均吸收通量表现为白桦林（-79.23±14.92）μg m^-2 h^-1>山杨林（-64.27±9.60）μg m^-2 h^-1>樟子松林（-62.54±15.48）μg m^-2 h^-1>兴安落叶松林（-48.73±12.26）μg m^-2 h^-1,兴安落叶松土壤CH₄平均吸收通量显著小于其他三种林型（P<0.05）。相比于自然状态,4种林型在去除凋落物后土壤CH₄吸收通量提高了2.12%-12.15%,但变化幅度均没有达到显著水平（P>0.05）。去除林下植被后4种林型CH₄吸收通量提高了0.84%-20.55%,且只有山杨林吸收增加达到显著水平（P<0.05）。同时去除林下植被和凋落物后,对白桦林和樟子松土壤CH₄通量影响不显著（P>0.05）,但对山杨林和兴安落叶松林影响显著（P<0.05）。总之,去除凋落物或林下植被均会提高土壤对CH₄吸收,去除林下植被对土壤CH₄通量的影响要大于去除凋落物的影响,但不同林型不同处理之间还存在差异。     

竹茶混交模式对表层土壤有机碳储量及组分的影响

为探究毛竹林下种植茶树对土壤有机碳储量与碳组分的影响,该研究以毛竹纯林、竹茶混交林和常绿阔叶林为研究对象,采集这3种林分类型的表层(0～10 cm)土壤,测定土壤有机碳(SOC)、碳组分、生物与非生物因素指标。结果表明:(1)竹茶混交林林下植物多样性相较于毛竹纯林显著降低,但其土壤有机碳密度(22.54±2.09)t·hm^-2、碳组分与毛竹纯林无显著差异(P>0.05)。竹茶混交林的矿物结合态有机碳(MOC)为(20.13±1.83)g·kg^-1,占总有机碳的92.66%。常绿阔叶林土壤有机碳密度比竹茶混交林和毛竹纯林高土壤有机碳密度分别高41.15%和41.00%(P<0.05)。(2)3种林分类型土壤微生物量碳(MBC)含量范围为0.58～3.08 g·kg^-1,土壤16S rRNA丰度范围为2.18×10¹⁰ ～5.65×10¹⁰copies·g^-1,固碳基因cbbL丰度范围为0.37×10⁸～ 1.10 ×10⁸ copies·g^-1,土壤微生物碳利用效率范围为0.03～0.28; 3种林分类型之间微生物相关指标不存在显著差异(P>0.05)。(3)3种林分类型SOC与土壤pH、砂粒含量和地上凋落物生物量呈显著负相关,与土壤黏粒含量、粉粒含量、总氮、C:N、总磷和铵态氮含量呈显著正相关(P<0.05)。(4)就不同碳组分而言,颗粒有机碳(POC)和MOC均与土壤pH、砂粒含量和根系生物量呈显著负相关,与土壤含水量、黏粒含量、粉粒含量、总氮、C:N、总磷和铵态氮含量呈显著正相关(P<0.05)。综上表明,竹茶混交改造会造成原生毛竹纯林林下植被多样性下降,但并未造成土壤碳储量下降; 而相较于常绿阔叶林,毛竹经营措施需要改进,以提升其碳汇效益。     

Phytoplankton primary production in a mesotrophic pond in sub-tropical Bangladesh

Annual gross primary productivity in mesotrophic Shahidullah Hall pond (Dhaka, Bangladesh) was 1383.35 g C m⁻² y⁻¹ (arithmetic mean). Daily primary productivity (between 1.6 and 6.8 g C m⁻² d⁻¹ was correlated with chlorophylla, day length and dissolved silica. Chlorophylla related significantly withk, incident light, SRP, alkalinity and conductivity. A negative correlation existed between biomass and rainfall. Productivity, biomass, conductivity, alkalinity, and SRP increased after mid-winter.k, I _k andZ _eu varied according seasonally.P _max related directly with temperature. Seasonal variation of ∝ ^B was 0.0049–0.0258 mg C (mg chla mmol PAR)⁻¹ m⁻². Q₁₀ was 2.12, community respiration 1334.99 g C m⁻² y⁻¹, and the underwater light climate 186.43μE m⁻² s⁻¹.     

Chromium-induced glucose uptake, superoxide anion production, and phagocytosis in cultured pulmonary alveolar macrophages of weanling pigs

The dose-dependent effects of chromium chloride (CrCl₃) and chromium picolinate (CrPic) were evaluated for their glucose uptake, superoxide anion (O ₂ ⁻ ) production, activity of glucose-6-phosphate dehydrogenase, and phagocytosis of incubated pulmonary alveolar macrophages in medium containing no or 5 × 10⁻⁸ M insulin. Glucose uptake was found to increase in cells treated with 20 μg/L CrCl₃. Incubation with 20 μg/L of CrPic enhanced glucose uptake and O ₂ ⁻ production in an insulin-dependent manner. However, the inclusion of CrPic to 100 μg/L in the medium absent of insulin also increased O ₂ ⁻ production. The activity of glucose-6-phosphate dehydrogenase was not affected by either the addition of Cr or insulin. The phagocytosis of Escherichia coli by macrophages was enhanced significantly (p<0.05) in medium containing 10–100 μg/L CrCl₃ or 20–100 μg/L CrPic in the presence of insulin. These results suggest that the addition of 10–20 μg/L CrCl₃ enhances directly the cellular activity of macrophages, whereas the effect of CrPic requires the cooperative action of insulin in enhancing their glucose uptake and phagocytosis.     

模块化工程改造大肠杆菌生产L-色氨酸

L-色氨酸作为一种必需氨基酸,广泛应用于食品、饲料和医药等领域。目前,微生物法生产L-色氨酸存在转化率低等问题。为此,本研究通过敲除L-色氨酸操纵子阻遏蛋白(L-tryptophan operon repressor protein, trpR)、替换l-色氨酸弱化子(trpL)、引入抗反馈调节的aroG^fbr等,获得可积累11.80 g/L L-色氨酸的底盘菌株大肠杆菌(Escherichia coli)TRP3。在此基础上,将L-色氨酸合成途径分为中心代谢途径模块、莽草酸(shikimic acid, SA)途径至分支酸(chorismic acid, CHA)模块、分支酸至L-色氨酸模块,并借助启动子工程,通过平衡中心代谢途径模块、莽草酸途径至分支酸模块、分支酸至L-色氨酸模块,获得工程菌E.coli TRP9。在5 L发酵罐中,工程菌E.coli TRP9的L-色氨酸产量提升至36.08 g/L,糖酸转化率提升至18.55%,达到理论转化率的81.7%。本研究利用模块工程策略,构建了高产L-色氨酸生产菌株,为l-色氨酸的规模化生产奠定了良好的基础。     

Monitoring of Changes in Selenium Concentration in Goat Milk During Short-Term Supplementation of Various Forms of Selenium

The goal of the experiment was to monitor the changes in the selenium concentration in goat milk during short-term oral supplementation of three different forms of selenium. The experiment involved 24 lactating goats of white shorthaired breed. Group C was the control; group S received selenium in the form of selenium-enriched yeast, group L in the form of lactate, and group B in the form of proteinate. Individual selenium preparations were administered individually orally in 250 μg Se dose per animal for 20 days. After the beginning of selenium supplementation, the selenium concentration in milk during the first 5 days grew gradually in group S. Between days 7 and 20 of Se supplementation, the mean Se concentrations in milk in groups were 12.53 ± 3.69 μg l⁻¹ (C), 25.90 ± 6.30 μg l⁻¹ (S), 13.14 ± 3.54 μg l⁻¹ (L), 11.70 ± 3.69 μg l⁻¹ (B). Differences between group S and other groups (C, B, L) were highly significant (p < 0.0001). Based on our results, selenium in the form of lactate and proteinate was excreted into the milk similarly, but selenium in the form of yeast, which contains high amount of selenomethionine, was excreted by milk in the highest amounts.     

代谢工程强化脱氮副球菌DYTN-1去除氮素污染物

【目的】脱氮副球菌(Paracoccus denitrificans)是一种环境友好的α-变形菌纲菌株,在有氧条件下也可进行反硝化过程,具有较好的脱氮能力。本研究以脱氮副球菌DYTN-1为底盘细胞,筛选氮素诱导型启动子用于强化硝化和反硝化途径,进而达到代谢工程强化脱氮副球菌DYTN-1去除氮素污染物的目的。【方法】通过接合转移的方法分别将过表达amoA、amoB、hao和nirS基因的重组质粒导入脱氮副球菌DYTN-1细胞中。经过荧光定量检测和氮素定量检测对脱氮副球菌DYTN-1的基因元件和氮去除能力进行表征。【结果】从基因组中挖掘了6个受NO₂^‒、NO₃^‒和NH₄⁺诱导的启动子,诱导差异为2‒26倍;且过表达nirS的菌株用2 g/L KNO₃处理24 h后培养基中NO₃^‒的残余量为野生型菌株的67%。同时过表达hao和nirS基因的菌株在用1 g/L NH₄Cl和2 g/L KNO₃处理12 h后,其NO₃^‒的剩余量仅为野生型菌株的50%,且最终总氮的降解效率达79.5%,剩余总氮仅为野生型菌株的一半。【结论】上述研究表明,利用筛选获得的启动子工具在P. denitrificans DYTN-1中进行代谢工程改造强化氮素污染物的去除具有可行性。     

不同恢复方式下大兴安岭重度火烧迹地林地土壤温室气体通量

为研究大兴安岭重度火烧迹地在不同恢复方式下林地土壤CO₂、CH₄和N₂O排放特征及其影响因素,采用静态箱/气相色谱法,在2017年生长季（6月-9月）对3种恢复方式（人工更新、天然更新和人工促进天然更新）林地土壤温室气体CO₂、CH₄、N₂O通量进行了原位观测。研究结果表明：（1）3种恢复方式林地土壤在生长季均为大气CO₂、N₂O的源,CH₄的汇;生长季林地土壤CO₂排放通量大小关系为人工促进天然更新（（634.40±246.52）mg m^-2 h^-1） > 人工更新（（603.63±213.22）mg m^-2 h^-1） > 天然更新（（575.81±244.12）mg m^-2 h^-1）,3种恢复方式间无显著差异;人工更新林地土壤CH₄吸收通量显著高于人工促进天然更新;天然更新林地土壤N₂O排放通量显著高于其他两种恢复方式。（2）土壤温度是影响3种恢复方式林地土壤温室气体通量的关键因素;土壤水分仅对人工更新林地土壤N₂O通量有极显著影响（P < 0.01）;3种恢复方式林地土壤CO₂通量与大气湿度具有极显著的响应（P < 0.01）;土壤pH仅与天然更新林地土壤CO₂通量显著相关（P < 0.05）;土壤全氮含量仅与人工促进天然更新林地土壤CH₄通量显著相关（P < 0.05）。（3）基于100年尺度,由3种温室气体计算全球增温潜势得出,人工促进天然更新（1.83×10⁴ kg CO₂/hm²） > 人工更新（1.74×10⁴ kg CO₂/hm²） > 天然更新（1.67×10⁴ kg CO₂/hm²）。（4）阿木尔地区林地土壤年生长季CO₂和N₂O排放量为8.85×10⁶ t和1.88×10² t,CH₄吸收量为1.05×10³ t。     

The effect of benthic sediments on dissolved nutrient concentrations and fluxes

The Ria Formosa is a meso-tidal coastal lagoon experiencing enhanced nutrient concentrations. Assessment of sediment–seawater interaction is essential if nutrient dynamics and the risk of eutrophication are to be fully understood. Pore water concentrations of dissolved inorganic and organic phosphorus, ammonium, nitrate and nitrite were determined in cores from six sites. Changes in nutrients concentrations were measured in intertidal pools on sand and mud between tides. Dissolved inorganic phosphorus (DIP) concentrations (~200 μmol l⁻¹) and effluxes (123 ± 14 μmol m⁻² h⁻¹) were greater from sand than mud (37 ± 10 μmol m⁻² h⁻¹), possibly due to the binding of P with the <63 μm fraction. NH₄⁺ effluxes were high outside the Anc?o Basin (821 ± 106 μmol m⁻² h⁻¹) and were associated with Enteromorpha sp. mats. The greatest NO₃⁻ efflux was from sediments near a salt marsh (170 ± 67 μmol m⁻² h⁻¹). These sediment fluxes of P were not sufficient to account for elevated P concentrations seen by other workers on the ebb tide from the Anc?o Basin. Intertidal pools were sinks for Dissolved Inorganic Nitrogen (DIN) and DIP over the 6 h exposure period. Thus, tidepools may be an important route of nutrients into sediments that enhances the effects of sediments on seawater nutrient concentrations.     

Avocado shoot culture, plantlet development and net CO2 assimilation in an ambient and CO2 enhanced environment

Summary The proliferation and survival of avocado nodal cultures of juvenile origin were affected by the form and concentration of nitrogen. Optimum growth was achieved on modified Murashige and Skoog medium containing 67% KNO₃ and 33% NH₄NO₃ with total N of 40 mM supplemented with 100 mg l⁻¹ myo-inositol, 1 mg l⁻¹ thiamine HCl, 30 g l⁻¹ sucrose, and 4.44 μM BA with a 16-h photoperiod (120–150 μmol m⁻² s⁻¹). Proliferating shoots and plantlets were photosynthetically active. Better shoot growth and accumulation of higher biomass occurred in a CO₂-enriched environment than under ambient CO₂ conditions. CO₂ assimilation efficiency, however, was higher under the latter conditions than in a CO₂-enhanced environment, e.g., 31±7 and 17±2 μmol CO₂ m⁻² s⁻¹, respectively. The net CO₂ assimilation rates of in vitro grown plantlets were comparable to those of seedlings ex vitro.     

提高微生物油脂生产能力的研究进展

微生物油脂是生物柴油生产领域具有广阔前景的新油脂资源。然而, 利用产油微生物进行油脂的工业化生产仍存在限氮条件下油脂生产强度不够高、对廉价高氮生物质原料的利用效率低等瓶颈问题。随着近年来发酵工程、生物信息学及分子生物学技术的发展, 国内外研究者利用不同策略优化微生物油脂的生产条件, 并对其油脂积累代谢途径进行改造, 旨在获得适用于工业化生产的产油性能优良的油脂菌。本综述总结了国内外利用生化工程、基因工程以及新兴的转录因子工程策略提高产油微生物油脂生产强度和扩大产油微生物廉价底物利用范围方面的研究进展, 并展望了基于组学研究、模块途径工程以及反向代谢工程的综合策略在理性改造产油微生物以提高其油脂发酵性能中的应用。     

酶的分子设计、改造与工程应用

酶工程的研究已经发展到分子水平 ,在体外通过基因工程、化学、物理等手段改造酶分子结构与功能 ,大幅提高了酶分子的进化效率和催化效率 ,生产有价值的非天然酶。对酶工程学若干“热点”和前沿课题的研究、应用进行了概述 ,分析了国际上酶工程研究及应用技术、手段、方法 ,包括体外分子进化、核酶和抗体酶的设计、酶分子的定向固定化技术、酶蛋白分子的化学修饰、融合酶、人工合成及模拟酶等技术 ,并展望了酶工程的技术进步和应用的新进展。     

阿维菌素的生物合成与途径工程

阿维菌素是一种高效安全的大环内酯杀虫杀螨剂。本文介绍了阿维菌素生物合成的步骤及参与合成步骤的有关酶系统和基因簇。对阿维菌素 8个组分合成的遗传控制基因 ,特别是对其中B1a组分合成的遗传控制位点进行讨论分析 ,并介绍了利用途径工程改造阿维链霉菌生产合成单一高效组分B1a和提高活性组分产量的研究进展。     

Rational design of thiolase substrate specificity for metabolic engineering applications

Metabolic engineering efforts require enzymes that are both highly active and specific toward the synthesis of a desired output product to be commercially feasible. The 3‐hydroxyacid (3HA) pathway, also known as the reverse β‐oxidation or coenzyme‐A‐dependent chain‐elongation pathway, can allow for the synthesis of dozens of useful compounds of various chain lengths and functionalities. However, this pathway suffers from byproduct formation, which lowers the yields of the desired longer chain products, as well as increases downstream separation costs. The thiolase enzyme catalyzes the first reaction in this pathway, and its substrate specificity at each of its two catalytic steps sets the chain length and composition of the chemical scaffold upon which the other downstream enzymes act. However, there have been few attempts reported in the literature to rationally engineer thiolase substrate specificity. In this study, we present a model‐guided, rational design study of ordered substrate binding applied to two biosynthetic thiolases, with the goal of increasing the ratio of C6/C4 products formed by the 3HA pathway, 3‐hydroxy‐hexanoic acid and 3‐hydroxybutyric acid. We identify thiolase mutants that result in nearly 10‐fold increases in C6/C4 selectivity. Our findings can extend to other pathways that employ the thiolase for chain elongation, as well as expand our knowledge of sequence–structure–function relationship for this important class of enzymes.     

Engineering of carboligase activity reaction in Candida glabrata for acetoin production

Utilization of Candida glabrata overproducing pyruvate is a promising strategy for high-level acetoin production. Based on the known regulatory and metabolic information, acetaldehyde and thiamine were fed to identify the key nodes of carboligase activity reaction (CAR) pathway and provide a direction for engineering C. glabrata. Accordingly, alcohol dehydrogenase, acetaldehyde dehydrogenase, pyruvate decarboxylase, and butanediol dehydrogenase were selected to be manipulated for strengthening the CAR pathway. Following the rational metabolic engineering, the engineered strain exhibited increased acetoin biosynthesis (2.24 g/L). In addition, through in silico simulation and redox balance analysis, NADH was identified as the key factor restricting higher acetoin production. Correspondingly, after introduction of NADH oxidase, the final acetoin production was further increased to 7.33 g/L. By combining the rational metabolic engineering and cofactor engineering, the acetoin-producing C. glabrata was improved stepwise, opening a novel pathway for rational development of microorganisms for bioproduction.     

生物法制备平台化合物乙偶姻的最新研究进展

乙偶姻(3-羟基-2-丁酮)作为一种应用广泛的食用香料和重要的平台化合物,具有广阔的工业应用前景。与传统的化学合成方法不同,高效、环保的乙偶姻生物制备方法,可以减轻资源和环境压力,促进我国低碳经济的发展。近来,生物法制备平台化学品乙偶姻取得了丰硕的研究成果。总结了最近几年国内外在该领域最新的研究热点及方向,简述了发酵法生产乙偶姻的优势菌株概况,重点综述了以糖类物质为底物生产乙偶姻的最新策略及研究成果、将微生物改造为生产手性乙偶姻的高效细胞炼制工厂以及将2,3-丁二醇或双乙酰作为发酵底物的研究趋势,并介绍了乙偶姻的分离纯化工艺。使用非致病性的安全菌株,高效率地利用廉价底物,并采用经济、简单、环保的分离纯化方式,从而生产具有高附加值的食品级或高手性纯度乙偶姻,是生物法制备乙偶姻产业化发展的可靠保障。     

组织工程的一般考虑

组织工程的最终目标是通过体外增减活细胞与其胞外环境相互作用而发育成具胡生物活性的组织或器官替代物,替换、修复组织或器官,或强化其生物学功能。本文主要讨论细胞移植和组织重建的影响因素和可能的方法。     

Engineering Escherichia coli BL21 (DE3) for high-yield production of germacrene A,a precursor of β-elemene via combinatorial metabolic engineering strategies

β-elemene is one of the most commonly used antineoplastic drugs in cancer treatment. As a plant-derived natural chemical, biologically engineering microorganisms to produce germacrene A to be converted to β-elemene harbors great expectations since chemical synthesis and plant isolation methods come with their production deficiencies. In this study, we report the design of an Escherichia coli cell factory for the de novo production of germacrene A to be converted to β-elemene from a simple carbon source. A series of systematic approaches of engineering the isoprenoid and central carbon pathways, translational and protein engineering of the sesquiterpene synthase, and exporter engineering yielded high-efficient β-elemene production. Specifically, deleting competing pathways in the central carbon pathway ensured the availability of acetyl-coA, pyruvate, and glyceraldehyde-3-phosphate for the isoprenoid pathways. Adopting lycopene color as a high throughput screening method, an optimized NS^Y305N was obtained via error-prone polymerase chain reaction mutagenesis. Further overexpression of key pathway enzymes, exporter genes, and translational engineering produced 1161.09 mg/L of β-elemene in a shake flask. Finally, we detected the highest reported titer of 3.52 g/L of β-elemene and 2.13 g/L germacrene A produced by an E. coli cell factory in a 4-L fed-batch fermentation. The systematic engineering reported here generally applies to microbial production of a broader range of chemicals. This illustrates that rewiring E. coli central metabolism is viable for producing acetyl-coA-derived and pyruvate-derived molecules cost-effectively.