Application of clustering techniques for the characterization of macroinvertebrate communities to support river restoration management

The European Water Framework Directive prescribes that the development of a river assessment system should be based on an ecological typology taking the biological reference conditions of each river type as a starting point. Aside from this assessment, water managers responsible for river restoration actions also need to know the steering environmental factors to meet these reference conditions for biological communities in each ecological river type. As such, an ecological typology based on biological communities is a necessity for efficient river management. In this study, different clustering techniques including the Sørensen similarity ratio, ordination analysis and self-organizing maps were applied to come to an ecological classification of a river. For this purpose, a series of sites within the Zwalm river basin (Flanders, Belgium) were monitored. These river sites were then characterized in terms of biotic (macroinvertebrates), physical–chemical and habitat variables. The cluster analysis resulted in a series of characteristic biotic communities that are found under certain environmental conditions, natural as well as human-influenced. The use of multiple clustering techniques can be of advantage to draw more straightforward and robust conclusions with regard to the ecological classification of river sites. The application of the clustering techniques on the Zwalm river basin, allowed for distinguishing five mutually isolated clusters, characterized by their natural typology and their pollution status. On the basis of this study, one may conclude that river management could benefit from the use of clustering methods for the interpretation of large quantities of data. Furthermore, the clustering results might enable the development of a cenotypology useful for efficiently steering river restoration and enabling river managers to meet a good ecological status in most of the rivers as set by the European Water Framework Directive.     

Submarine Groundwater Discharge to the Coastal Environment of a Mediterranean Island (Majorca, Spain): Ecosystem and Biogeochemical Significance

This article reports the results of a study of submarine groundwater discharge (SGD) to coastal waters of Majorca (NW Mediterranean). The overall aim is to evaluate the relevance of SGD of the island and chemically characterize the components that are supplied to the coastal waters through this pathway. Although other discharge areas are identified, we particularly focus on SGD in bays and areas of increased sea water residence time where effects of the discharges are expected to be most notable. Analysis at four selected embayments with different land-use characteristics indicated a link between human activities (mainly agriculture and urban) and compounds arriving to the coast. A pathway for these elements is the diffuse discharge along the shoreline, as suggested by the inverse relationship between salinity and nutrients in nearshore porewaters. A general survey was conducted at 46 sites around the island, and used dissolved radium as a qualitative indicator of SGD. Measurements of nutrients (P and N), pCO₂ and TOC were performed to characterize the elements delivered to the coastal environment. Most nearshore samples showed ²²⁴Ra enrichment (mean ± SE, 7.0 ± 0.6 dpm 100 l^?1) with respect to offshore waters (1.1 ± 0.2 dpm 100 l^?1); however, ²²⁴Ra measurements along the coast were highly variable (1.0–38.1 dpm 100 l^?1). Coastal samples with enhanced radium levels showed elevated pCO₂ with respect to atmospheric concentrations, which together with high pCO₂ in groundwater (>5,000 ppm) indicates that SGD is an important vector of CO₂ to coastal waters. Moreover, a relationship between ²²⁴Ra and phytoplankton biomass was established, suggesting an important impact of SGD on coastal productivity. The results presented here provide a first approximation of the SGD effect in the coastal waters of Majorca, and indicate that SGD could be an important source of nutrients and CO₂ to the coast, strongly influencing the productivity and biogeochemical cycling of the coastal waters of Majorca.     

SGD: Saccharomyces Genome Database.

The Saccharomyces Genome Database (SGD) provides Internet access to the complete Saccharomyces cerevisiae genomic sequence, its genes and their products, the phenotypes of its mutants, and the literature supporting these data. The amount of information and the number of features provided by SGD have increased greatly following the release of the S.cerevisiae genomic sequence, which is currently the only complete sequence of a eukaryotic genome. SGD aids researchers by providing not only basic information, but also tools such as sequence similarity searching that lead to detailed information about features of the genome and relationships between genes. SGD presents information using a variety of user-friendly, dynamically created graphical displays illustrating physical, genetic and sequence feature maps. SGD can be accessed via the World Wide Web at http://genome-www.stanford.edu/Saccharomyces/     

Assessment of coastal protection as an ecosystem service in Europe

Mapping and assessment of ecosystem services is essential to provide scientific support to global and EU biodiversity policy. Coastal protection has been mostly analysed in the frame of coastal vulnerability studies or in local, habitat-specific assessments. This paper provides a conceptual and methodological approach to assess coastal protection as an ecosystem service at different spatial–temporal scales, and applies it to the entire EU coastal zone. The assessment of coastal protection incorporates 14 biophysical and socio-economic variables from both terrestrial and marine datasets. Those variables define three indicators: coastal protection capacity, coastal exposure and human demand for protection. A questionnaire filled by coastal researchers helped assign ranks to categorical parameters and weights to the individual variables. The three indicators are then framed into the ecosystem services cascade model to estimate how coastal ecosystems provide protection, in particular describing the service function, flow and benefit. The results are comparative and aim to support integrated land and marine spatial planning. The main drivers of change for the provision of coastal protection come from the widespread anthropogenic pressures in the European coastal zone, for which a short quantitative analysis is provided.     

From grey to green: Efficacy of eco‐engineering solutions for nature‐based coastal defence

Climate change is increasing the threat of erosion and flooding along coastlines globally. Engineering solutions (e.g. seawalls and breakwaters) in response to protecting coastal communities and associated infrastructure are increasingly becoming economically and ecologically unsustainable. This has led to recommendations to create or restore natural habitats, such as sand dunes, saltmarsh, mangroves, seagrass and kelp beds, and coral and shellfish reefs, to provide coastal protection in place of (or to complement) artificial structures. Coastal managers are frequently faced with the problem of an eroding coastline, which requires a decision on what mitigation options are most appropriate to implement. A barrier to uptake of nature‐based coastal defence is stringent evaluation of the effectiveness in comparison to artificial protection structures. Here, we assess the current evidence for the efficacy of nature‐based vs. artificial coastal protection and discuss future research needs. Future projects should evaluate habitats created or restored for coastal defence for cost‐effectiveness in comparison to an artificial structure under the same environmental conditions. Cost‐benefit analyses should take into consideration all ecosystem services provided by nature‐based or artificial structures in addition to coastal protection. Interdisciplinary research among scientists, coastal managers and engineers is required to facilitate the experimental trials needed to test the value of these shoreline protection schemes, in order to support their use as alternatives to artificial structures. This research needs to happen now as our rapidly changing climate requires new and innovative solutions to reduce the vulnerability of coastal communities to an increasingly uncertain future.     

Ocean energy and the law of the sea: The need for a protocol

Although fossil fuels are the overwhelming source of energy for the world, and will continue to be so for the foreseeable future, demographic, environmental, political, and economic factors indicate that interest in alternative, renewable sources of energy will grow. There is a need for both global and national policies on ocean energy management. In particular, coastal states and the energy industry would benefit from guidelines that helped to create a predictable, stable environment in which long‐term, high‐cost research, development, and investment decisions could be made with confidence. Coastal states have jurisdiction over the maritime zones most relevant to energy production, but many lack the expertise and funds to develop this potential source. Industry must operate within the control of coastal states and will not be served well by a plethora of differing legal interpretations and unilaterally imposed restrictions and obligations from state to state. An Ocean Energy Protocol to the 1982 UN Convention on the Law of the Sea would afford governments and industry the opportunity to clarify their respective obligations and address particular interests for mutual benefit.     

Coastal dynamics and wetlands stability. The Ebro delta case

Coastal wetland stability and structure can be significantly affected by littoral processes when they are close to the shoreline. Thus, under certain conditions, the combination of shoreline dynamics and direct wave action during storms can influence the stability of marshes and vegetation community composition. This interaction between littoral dynamics and coastal wetlands is illustrated by analysing processes taking place in the Buda Island (Ebro delta, NW Spain), where a coastal lagoon very close to a retreating shoreline exists. Two main time scales have been found to be relevant for interaction of coastal processes with ecosystem dynamics, the decadal and episodic scales. The decadal scale determines the average trend in beach width and directly controls the potential loss of wetland surface. The episodic scale is linked to the occurrence of wave and storm surge events and it determines a pulsing stress in the ecosystem through flooding, being key parameters to determine their direct influence the intensity and repetition of these events.     

Regulating Shipping in the Arctic Ocean: An Analysis of State Practice

The United Nations Convention on the Law of the Sea (LOSC) permits state parties to establish an Exclusive Economic Zone (EEZ) 200 nautical miles from their coast. Coastal states have exclusive jurisdiction over resources within the EEZ, but navigational and other high seas freedoms continue to exist. A significant number of states have, however, enacted legislation that departs from the LOSC, interfering with the navigational rights and freedoms of other states. This article analzses this development with a specific focus on the Arctic. It investigates the powers of Arctic coastal states to regulate shipping in the EEZ and thereby navigation in the Arctic Ocean. It adds to the existing literature by providing an analysis of state practice, suggesting that despite uncertainty concerning the interpretation of the LOSC Article 234 and the right to exercise legislative jurisdiction over ice-covered waters, a not insignificant number of states have claimed jurisdiction in their own EEZ beyond the rights granted in the LOSC, and are therefore not in a position to object to extensive jurisdictional claims in the Arctic.     

The Chilean coastal range: a vanishing center of biodiversity and endemism in South American temperate rainforests

Temperate forests of southern South America are globally important because of their high level of endemism. I argue here that within southern South America, rainforests of the Chilean Coastal Range should be the primary target for new conservation efforts. Historically, most protected areas in southern South America have been designated to preserve forests above 600 m, mainly in the Andes. However, Coastal Range forests have higher species richness and are under greater threat than Andean forests at similar latitudes. Coastal forests are characterized by the presence of numerous narrow-range endemics, among them two monotypic plant families. The higher frequency of endemic species in Coastal Range forests is attributed to its more stable biogeographic history compared to the Andes, particularly during the glacial events of the Quaternary. Due to the extent of human impact, the remaining fragments of coastal forests are quite distant from one another, and are disconnected from the larger protected areas of Andean forests. Only 439000 ha of Valdivian coastal forest still remain, including some remnants of primary forest. New private or public reserves should be created to protect the last remnants of continuous forest remaining on the Coastal Range of the Valdivian region (40–42° S). A different conservation strategy should be applied north of 40° S, where protected areas are too small and fragments are too scattered to maintain viable populations of most vertebrates. In this latter area, I recommend expanding existing reserves, restoring native forests, and interconnecting remnant forests through a corridor network.     

Persistence of Coastal Vegetation in Supratidal Zones of Northern China

Coastal vegetation comprises a number of coastal specialists and terrestrial generalists. It remains unclear how they persist on disturbed and undisturbed coastal conditions. We tested the hypothesis that coastal specialists may be superior to terrestrial generalists on supratidal zones of coasts, but their superiority can be influenced by human disturbances. Eight separate sandy coasts of the Shandong Peninsula were sampled, representing for disturbed and undisturbed sandy coasts. Plants growing on their supratidal zones were surveyed. On this basis, we compared the relative dominances, niche widths, and commonness of all species, and also analyzed species diversities of the coasts. Coastal specialists were found to be more common and widespread on supratidal zones of the sandy coasts than terrestrial generalists haphazardly invading from hinterlands. Coastal specialists exhibited lower Sørensen dissimilarities than terrestrial generalists among the coasts. Tourist trampling seemed more detrimental than pond fishery to coastal vegetation. Relative to terrestrial generalists, coastal specialists responded to human disturbances more deterministically, with steady decreases in species diversities. These evidences verify that coastal specialists are intrinsically superior to terrestrial generalists on supratidal zones of coasts, especially of undisturbed coasts, because their dispersal among coasts adapts well to local storm surge regime. They also validate that human disturbances can depress the superiority of coastal specialists, partly by inducing invasion of terrestrial generalists.     

Can the EU agri-environmental aid program be extended into the coastal zone to combat eutrophication?

Eutrophication of coastal waters is a serious environmental problem with high costs for society globally. This is a development which demands immediate environmental action along many coastal sites. Since the 1980s, mussel farming has been recognized by Swedish environmental authorities as a possible measure to improve coastal water quality. Concepts and management strategies on how to increase mussel farming and thus combat coastal marine eutrophication has recently been developed in Sweden. The main principle of this development has been the implementation of nutrient trading as a management tool. This imposes demands on those who emit the pollution through the establishment of emission quotas, which are traded and bought by the emitter. The seller is a nutrient harvesting enterprise, e.g., a mussel farmer. This principle is particularly straightforward when the nutrients are discharged from a point source. When examining the nutrient supply from all diffuse sources, the situation is more complex. However, since the major part of the nutrient supply to coastal waters in many areas of Europe has its origin in agricultural operations, we suggest that the EU agro-environmental aid program could be extended into the coastal zone in order to combat eutrophication. In practice, this should involve support paid to mussel farming enterprises through their harvest of mussels (and thus their harvest of nutrients) in the same way as support is paid to agricultural farmers for operations that reduce nutrient leakage from their farmland. This is a simple, cost-effective and straightforward way of improving coastal water quality at many coastal sites that will, at the same time, provide coastal jobs. However, this eutrophication combat method depends on the EU agro-environmental aid program being extended beyond the shoreline. Guest editors: J. H. Andersen & D. J. Conley Eutrophication in Coastal Ecosystems: Selected papers from the Second International Symposium on Research and Management of Eutrophication in Coastal Ecosystems, 20–23 June 2006, Nyborg, Denmark     

Are Chilean coastal forests pre‐Pleistocene relicts? Evidence from foliar physiognomy,palaeoclimate, and phytogeography

Aim We ask whether contemporary forests of the Chilean Coastal Range can be considered to be direct and conservative descendants of pre‐Pleistocene palaeofloras that occurred in southern South America from the Palaeogene to early Neogene periods (65–10 Ma), maintaining foliar physiognomies that do not match their present‐day climate. We also identify the most likely ancestors of present‐day coastal forests. Location Coastal Range of south‐central Chile (33–40° S). Methods We compared leaf morphology between five representative modern floras from mid‐latitude forests of the Chilean Coastal Range, and 14 Palaeogene–early Neogene palaeofloras from southern South America. We also compared the composition of biogeographical elements (defined by the modern distribution of plant genera) between fossil and present‐day assemblages. Palaeoclimatic reconstructions were based on a canonical correspondence analysis between leaf morphology of modern assemblages and eight climatic variables, and tested by a Monte Carlo permutation test. We compared the relative positions of fossil and modern floras on the environmental vector space defined by Canoco, and on axes defined by instrumental and estimated temperature and precipitation data. Results According to foliar characters, Palaeogene palaeofloras were strikingly divergent from present‐day coastal forests of central Chile. In contrast, two extant forest floras of the Chilean Coastal Range have a foliar morphology that resembles some late Eocene to early Miocene mixed palaeofloras, at least 23 Myr older. These two modern sites are representative of an area of the Coastal Range (36–37° S) that has been highlighted for its relictual character. None of the 14 fossil floras corresponded exactly to the modern composition of phytogeographic elements, although correspondence analyses showed that mixed and Neogene subtropical fossil floras were compositionally close to the extant woody floras of coastal forests in central Chile. Main Conclusions Contemporary forests of the Chilean Coastal Range exhibit strong physiognomic resemblance to the mixed palaeofloras from 33°57′ to 41°15′ S, which may be the closest ancestor of the deciduous and endemic‐rich Maulino forest, presently restricted to coastal areas between 36° and 38° S. In turn, the Neogene subtropical palaeoflora that occurred in the Proto‐Andean foothills of central Chile is the likely predecessor of Mediterranean‐type sclerophyllous forests of central Chile (32–33° S). Despite foliar resemblance between the late pre‐Pleistocene and extant forest floras, our palaeoclimatic reconstructions suggest that modern assemblages exist under climatic conditions that do not match their foliar physiognomy. We attribute this convergence in foliar morphology to the ‘evolutionary inertia’ of surviving lineages, favoured by the buffering effect of the coastal environment on climatic variability.     

Groundwater and pore water inputs to the coastal zone

Both terrestrial and marine forces drive underground fluid flows in the coastal zone. Hydraulic gradients on land result in groundwater seepage near shore and may contribute to flows further out on the shelf from confined aquifers. Marine processes such as tidal pumping and current-induced pressure gradients may induce interfacial fluid flow anywhere on the shelf where permeable sediments are present. The terrestrial and oceanic forces overlap spatially so measured fluid advection through coastal sediments may be a result of composite forcing. We thus define “submarine groundwater discharge” (SGD) as any and all flow of water on continental margins from the seabed to the coastal ocean, regardless of fluid composition or driving force. SGD is typically characterized by low specific flow rates that make detection and quantification difficult. However, because such flows occur over very large areas, the total flux is significant. Discharging fluids, whether derived from land or composed of re-circulated seawater, will react with sediment components. These reactions may increase substantially the concentrations of nutrients, carbon, and metals in the fluids. These fluids are thus a source of biogeochemically important constituents to the coastal ocean. Terrestrially-derived fluids represent a pathway for new material fluxes to the coastal zone. This may result in diffuse pollution in areas where contaminated groundwaters occur. This paper presents an historical context of SGD studies, defines the process in a form that is consistent with our current understanding of the driving forces as well as our assessment techniques, and reviews the estimated global fluxes and biogeochemical implications. We conclude that to fully characterize marine geochemical budgets, one must give due consideration to SGD. New methodologies, technologies, and modeling approaches are required to discriminate among the various forces that drive SGD and to evaluate these fluxes more precisely.     

Impact of Submarine Groundwater Discharge on Marine Water Quality and Reef Biota of Maui

Generally unseen and infrequently measured, submarine groundwater discharge (SGD) can transport potentially large loads of nutrients and other land-based contaminants to coastal ecosystems. To examine this linkage we employed algal bioassays, benthic community analysis, and geochemical methods to examine water quality and community parameters of nearshore reefs adjacent to a variety of potential, land-based nutrient sources on Maui. Three common reef algae, Acanthophora spicifera, Hypnea musciformis, and Ulva spp. were collected and/or deployed at six locations with SGD. Algal tissue nitrogen (N) parameters (δ¹⁵N, N %, and C:N) were compared with nutrient and δ¹⁵N-nitrate values of coastal groundwater and nearshore surface water at all locations. Benthic community composition was estimated for ten 10-m transects per location. Reefs adjacent to sugarcane farms had the greatest abundance of macroalgae, low species diversity, and the highest concentrations of N in algal tissues, coastal groundwater, and marine surface waters compared to locations with low anthropogenic impact. Based on δ¹⁵N values of algal tissues, we estimate ca. 0.31 km² of Kahului Bay is impacted by effluent injected underground at the Kahului Wastewater Reclamation Facility (WRF); this region is barren of corals and almost entirely dominated by colonial zoanthids. Significant correlations among parameters of algal tissue N with adjacent surface and coastal groundwater N indicate that these bioassays provided a useful measure of nutrient source and loading. A conceptual model that uses Ulva spp. tissue δ¹⁵N and N % to identify potential N source(s) and relative N loading is proposed for Hawaiʻi. These results indicate that SGD can be a significant transport pathway for land-based nutrients with important biogeochemical and ecological implications in tropical, oceanic islands.     

On the possibility for generic modeling of submarine groundwater discharge

We simulate large-scale dynamics of submarine groundwater discharge (SGD) in three different coastal aquifers on the Mediterranean Sea. We subject these aquifers to a wide range of different groundwater management conditions, leading to widely different net groundwater drainage from land to sea. The resulting SGD at steady-state is quantifiable and predictable by simple linearity in the net land-determined groundwater drainage, defined as total fresh water drainage minus groundwater extraction in the coastal aquifer system. This linearity appears to be general and independent of site-specific, variable and complex details of hydrogeology, aquifer hydraulics, streamlines and salinity transition zones in different coastal systems. Also independently of site-specifics, low SGD implies high seawater content due to seawater intruding into the aquifer and mixing with fresh groundwater within a wide salinity transition zone in the aquifer. Increasing SGD implies decreasing seawater content, decreased mixing between seawater and fresh groundwater and narrowing of the salinity transition zone of brackish groundwater in the aquifer.     

Determining the Most Important Physiological and Agronomic Traits Contributing to Maize Grain Yield through Machine Learning Algorithms: A New Avenue in Intelligent Agriculture

Prediction is an attempt to accurately forecast the outcome of a specific situation while using input information obtained from a set of variables that potentially describe the situation. They can be used to project physiological and agronomic processes; regarding this fact, agronomic traits such as yield can be affected by a large number of variables. In this study, we analyzed a large number of physiological and agronomic traits by screening, clustering, and decision tree models to select the most relevant factors for the prospect of accurately increasing maize grain yield. Decision tree models (with nearly the same performance evaluation) were the most useful tools in understanding the underlying relationships in physiological and agronomic features for selecting the most important and relevant traits (sowing date-location, kernel number per ear, maximum water content, kernel weight, and season duration) corresponding to the maize grain yield. In particular, decision tree generated by C&RT algorithm was the best model for yield prediction based on physiological and agronomical traits which can be extensively employed in future breeding programs. No significant differences in the decision tree models were found when feature selection filtering on data were used, but positive feature selection effect observed in clustering models. Finally, the results showed that the proposed model techniques are useful tools for crop physiologists to search through large datasets seeking patterns for the physiological and agronomic factors, and may assist the selection of the most important traits for the individual site and field. In particular, decision tree models are method of choice with the capability of illustrating different pathways of yield increase in breeding programs, governed by their hierarchy structure of feature ranking as well as pattern discovery via various combinations of features.     

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. The latest protein structure and comparison tools available at SGD are presented here. With the completion of the yeast sequence and the Caenorhabditis elegans sequence soon to follow, comparison of proteins from complete eukaryotic proteomes will be an extremely powerful way to learn more about a particular protein's structure, its function, and its relationships with other proteins. SGD can be accessed through the World Wide Web at http://genome-www.stanford.edu/Saccharomyces/     

Incorporating DEM Uncertainty in Coastal Inundation Mapping

Coastal managers require reliable spatial data on the extent and timing of potential coastal inundation, particularly in a changing climate. Most sea level rise (SLR) vulnerability assessments are undertaken using the easily implemented bathtub approach, where areas adjacent to the sea and below a given elevation are mapped using a deterministic line dividing potentially inundated from dry areas. This method only requires elevation data usually in the form of a digital elevation model (DEM). However, inherent errors in the DEM and spatial analysis of the bathtub model propagate into the inundation mapping. The aim of this study was to assess the impacts of spatially variable and spatially correlated elevation errors in high-spatial resolution DEMs for mapping coastal inundation. Elevation errors were best modelled using regression-kriging. This geostatistical model takes the spatial correlation in elevation errors into account, which has a significant impact on analyses that include spatial interactions, such as inundation modelling. The spatial variability of elevation errors was partially explained by land cover and terrain variables. Elevation errors were simulated using sequential Gaussian simulation, a Monte Carlo probabilistic approach. 1,000 error simulations were added to the original DEM and reclassified using a hydrologically correct bathtub method. The probability of inundation to a scenario combining a 1 in 100 year storm event over a 1 m SLR was calculated by counting the proportion of times from the 1,000 simulations that a location was inundated. This probabilistic approach can be used in a risk-aversive decision making process by planning for scenarios with different probabilities of occurrence. For example, results showed that when considering a 1% probability exceedance, the inundated area was approximately 11% larger than mapped using the deterministic bathtub approach. The probabilistic approach provides visually intuitive maps that convey uncertainties inherent to spatial data and analysis.     

Biodiversity and China's new Great Wall

Coastal armouring and the reclamation of intertidal areas through the use of seawalls and other artificial structures has been practiced for thousands of years, but its recent expansion in China and elsewhere in Asia has been unprecedented in its rate and intensity. One result has been the recent loss of nearly two‐thirds of tidal flats in the Yellow Sea, a globally unique ecosystem of high ecological value. The severe effects on biodiversity of the recent large‐scale coastal land claim activities in China are well documented, yet some recent studies have emphasized the ecological opportunities provided by such artificial coastal infrastructure in China, in some cases suggesting that the ecological impacts of coastal infrastructure should be reconsidered due to benefits to some rocky shore species in a changing climate. This is cause for concern because, while studying the “new ecology” arising from coastal modification is useful, broad conclusions around the ecological role or conservation gains from seawall construction without adequate contextualization underplays the ecological consequences of large‐scale coastal land claim, and could potentially undermine efforts to achieve biodiversity conservation. Here, we clarify the characteristics of seawall construction in China and summarize the environmental damage and some broadscale impacts caused by this type of infrastructure expansion on the endangered Yellow Sea tidal flats ecosystem. We also highlight the urgent need for all coastal development plans to consider how coastal wetlands and ecosystem functionality can be maximally retained within the development precinct.