Diversity and habitat relationships of hypogeous fungi. II. Factors influencing the occurrence and number of taxa

Fruit-bodies of hypogeous fungi were sampled over two seasons across 136 forested study sites representing a stratified sample of the climatic, geological and topographic features of far south-eastern mainland Australia. Two hundred and nine species, over three-quarters being undescribed, were recorded. Statistical models based on various environmental attributes measured for each site were developed for the occurrence of several common taxa. At a landscape scale, climatic factors such as mean minimum temperature of the coldest month and annual mean moisture index were important explanatory variables for most taxa examined, but the type of response varied. More locally, topographic position, soil fertility, time since last fire and micro-habitat structures such as the leaf litter layer and number of large fallen trees also influenced the distribution of taxa in different ways. A model was then developed for the number of fungal species occurring at each site. Important explanatory variables were type of substrate, topography and diversity of potential host eucalypt species. The utility of each model constructed needs evaluation by further sampling of hypogeous fungi. Possible implications of our findings for forest management are discussed. Further analyses of our existing data are also identified.     

Ecological relationships among hypogeous fungi and trees: inferences from association analysis integrated with habitat modeling

Association analyses by contingency tables and generalized linear modeling were compared to infer relationships among hypogeous (belowground-fruiting) ectomycorrhizal fungi and potential host tree species from 136 study plots in forested habitats in southeastern mainland Australia. Results from both types of statistical approaches were highly congruent. As with previous experimental studies, no exclusive fungus-host tree associations were identified. However, the likelihood of occurrence of some species of fungi increased significantly in the presence of particular host tree species, suggesting fungal host preference or shared habitat preferences. Similarly, while most associations among fungal species were nonsignificant, a few taxa were more likely to be found in the presence of certain others. These were termed positively associated and are thought to share common climatic and microhabitat requirements or host preferences. In contrast, other combinations of fungal species were negatively associated with one another, perhaps indicating different habitat preferences. Furthermore, the finding that some fungi occurred more frequently in the presence of certain tree species provides a starting point for selection of compatible host-fungus combinations that could be used for forest nursery and restoration applications.     

A phytoecological study of the mire Northern Kisselbergmosen, SE Norway. III. Diversity and habitat niche relationships

Alpha and beta diversity and habitat niche relationships of a poor, boreal mire was studied, based upon an ordination by detrended correspondence analysis and a subjective classification. The three first DCA axes were interpreted as variation along the following ecoclines: (1) mire expanse carpet–mire expanse hummock–mire margin hummock, (2) nutrient status: ombrotrophic–poor minerotrophic, and as a coenocline (3) associated with peat-producing ability of the vegetation with an unclear ecological basis. The autecology of the 39 most frequent species was decribed with respect to these gradients. Alpha diversity patterns varied considerably between coenoclines. Beta diversity was always higher in the bottom layer than in the field layer. Habitat niche breadth was strongly correlated with species abundance, and separable into a frequency-independent and a frequency-dependent component. The former decreased from vascular plants to hepatics, and further to Sphagnum spp. It was argued that the importance of interactions was high in the bottom layer, particularly among Sphagnum spp., but also among hepatics. Interactions among vascular plants was considered unimportant, except in hummocks. Plant strategies were discussed. The niche breadth approach was evaluated, and found fruitful, while niche overlap was considered to provide redundant information. The importance of each of (1) interspecific interactions, (2) destabilizing factors, (3) stress, and (4) chance, as structuring factors in boreal mires, is discussed. Boreal mires are considered to conform to the patch-dynamics theory of non-equilibrium coexistence.     

Factors influencing the occurrence of males in natural populations of Synchaeta spp.

Changes in the temporal abundance of females and males of Synchaeta spp. were followed for one year (1983) at two stations in the brackish northern Baltic proper. Males were found only when the abundance of females was increasing and the phytoplankton biomass was dominated by large diatoms.     

沙漠生境白沙蒿(Artemisia sphaerocephala)根围丛枝菌根真菌多样性

在腾格里沙漠东南缘的沙坡头地区设立样地,于2007年4、7和10月从白沙蒿(Artemisia sphaerocephala)根围0～10、10～20、20～30、30～40和40～50cm土层采集土样,分离其丛枝菌根(arbuscular mycorrhiza,AM)真菌并测定相关土壤因子,研究了白沙蒿根围AM真菌的时空分布。结果表明:AM真菌在白沙蒿根系菌丝定殖率达90.5%,其根围AM真菌孢子密度平均5.4ind.g-1土,随季节变化有明显的时空差异,并与土壤微环境显著相关;共分离鉴定出5属21种AM真菌,白沙蒿根围优势菌种为光壁无梗囊霉(Acaulospora laevis),7月AM真菌物种丰富度最大;AM真菌孢子密度与土壤有机质呈极显著正相关;AM真菌种的丰富度与土壤速效磷呈极显著负相关,与土壤温度和孢子密度呈极显著正相关,与菌丝定殖率呈显著正相关。分析表明,白沙蒿与AM真菌有良好的共生关系,AM真菌增强了白沙蒿对恶劣沙生环境的抵抗力,有助于维护荒漠土壤生态系统的完整性和稳定性。     

Defining critical habitat for plant species with poor occurrence knowledge and identification of critical habitat networks

We applied spatial distribution and reserve selection modeling to identify critical habitat network for 50 critically endangered plant species of Uzbekistan. We created maps of relative habitat suitability, converted them into maps of species critical habitat, and the latter served as input to the spatial conservation prioritization program Zonation. Although all studied species were extremely rare, the extent of their predicted critical habitat ranged from 2.6 to 15,508 km² and did not correlate with the number of occurrence records. It appears that the extent of the threatened species predicted suitable area is an indicator of whether the species rarity is inherent due to vary narrow ecological niche or caused solely by anthropogenic activity. This has important conservation implications. Imperiled species from the first category are less amenable (if at all) to such conservation actions as trans- or relocation (i.e. there is no alternative to protecting the last remaining populations). Species from the second group can potentially grow in many more locations than they currently occupy, and therefore, for these species, translocation can be the most appropriate strategy when their last remaining locations are degraded or can not be protected for whatever reason. Based on results of nature reserve design that utilized SDM-predicted maps for 50 imperiled species, we recommend adding new areas to the existing network of protected areas to cover critical habitats of highly threatened plant species. The highest priority for adding have the territories harboring critical habitat of disproportionally high number of imperiled species, and we found that they all are concentrated in the eastern part of Uzbekistan.

     

Ecological role of hypogeous ectomycorrhizal fungi in Australian forests and woodlands

The Australian continent is characterised by a harsh climate and highly weathered, nutrient-poor soils. Trees and shrubs in these stressful environmental conditions typically form ectomycorrhizae with a variety of fungi, many of which form hypogeous (underground) fruit-bodies. The total number of hypogeous fungi Australia-wide is unknown, although recent systematic studies in the far south-eastern corner of the country suggest that they may number well over a thousand. Similar surveys elswhere are urgently required to clarify the situation. The precise ecological role of many hypogeous fungi remains to be determined, although most presumably facilitate nutrient and water uptake on behalf of their mycorrhizal partners. Others may also protect their plant host from root pathogens. One key function of hypogeous fungi is the role their fruit-bodies play as a food resource for a large range of terrestrial mammals. For a few animals, hypogeous fungi form the single most important dietary item year-round, whereas for others they may only be of seasonal or supplementary value. The extent to which fungi form part of the diet of any mammal species is reflected in the various levels of adaptation toward acquiring, then processing and digesting these cryptic and nutritionally challenging foodstuffs.     

Factors affecting the occurrence and distribution of entomopathogenic fungi in natural and cultivated soils

Factors affecting the occurrence and distribution of entomopathogenic fungi in 244 soil samples collected from natural and cultivated areas in Spain were studied using an integrated approach based on univariate and multivariate analyses. Entomopathogenic fungi were isolated from 175 of the 244 (71.7 %) soil samples, with only two species found, Beauveria bassiana and Metarhizium anisopliae. Of the 244 soil samples, 104 yielded B. bassiana (42.6 %), 18 yielded M. anisopliae (7.3 %), and 53 soil samples (21.7 %) harboured both fungi. Log-linear models indicated no significant effect of habitat on the occurrence of B. bassiana, but a strong association between M. anisopliae and soils from cultivated habitats, particularly field crops. Also, irrespective of habitat type, B. bassiana predominated over M. anisopliae in soils with a higher clay content, higher pH, and lower organic matter content. Logistic regression analyses showed that pH and clay content were predictive variables for the occurrence of B. bassiana, whereas organic matter content was the predictive variable for M. anisopliae. Also, latitude and longitude predicted the occurrence of these same species, but in opposite directions. Altitude was found to be predictive for the occurrence of B. bassiana. Using principal component analysis, four factors (1 to 4) accounted for 86 % of the total variance; 32.8, 22.9, 19.6 and 10.4 % of the cumulative variance explained, respectively. Factor 1 was associated with high positive weights for soil clay and silt content and high negative weights for soil sand content. Factor 2 was associated with high positive weights for soil organic matter content and high negative weights for soil pH. Factor 3 was associated with high positive weights for latitude and longitude of the sampled localities and factor 4, had high positive weights only for the altitude. Bi-plot displays representing soil samples were developed for different factor combinations and indicated that, irrespective of geographical location, absence of both fungal species was determined by alkaline sandy soils with low organic matter content, whereas heaviness of soil texture, acidity and increasing organic matter content led to progressively higher percentages of samples harbouring entomopathogenic fungi. These results could aid decision-making as to whether or not a particular cultivated or natural soil is suitable for using entomopathogenic fungi as a pest control measure and for selecting the fungal species best suited to a particular soil.     

Arbuscular mycorrhizal fungi shift competitive relationships among crop and weed species

Aims

Because plants cannot change their environmental circumstances by changing their location, they must instead adapt to a wide variety of environmental conditions, especially soil conditions. One of the most effective ways for a plant to adapt to a given soil condition is by modifying its root system architecture. We aim to identify the genetic factors controlling root growth angle, a trait that affects root system architecture.

Methods

The present study consisted of a genetic analysis of the seminal root growth angle in wheat; the parental varieties of the doubled haploid lines (DHLs) used in this study exhibited significantly different root growth directions. Using the ‘basket’ method, the ratio of deep roots (DRR; the proportion of total roots with GA > 45 degrees) was observed for evaluating deep rooting.

Results

We were able to identify novel quantitative trait loci (QTLs) controlling the gravitropic and hydrotropic responses of wheat roots. Moreover, we detected one QTL for seminal root number per seedling (RN) on chromosome 5A and two QTLs for seminal root elongation rate (ER) on chromosomes 5D and 7D.

Conclusions

Gravitropic and hydrotropic responses of wheat roots, which play a significant role in establishing root system architecture, are controlled by independent genetic factors.     

Factors influencing biohydrogenation and conjugated linoleic acid production by mixed rumen fungi

The objective of this study was to evaluate the effect of soluble carbohydrates (glucose, cellobiose), pH (6.0, 6.5, 7.0), and rumen microbial growth factors (VFA, vitamins) on biohydrogenation of linoleic acid (LA) by mixed rumen fungi. Addition of glucose or cellobiose to culture media slowed the rate of biohydrogenation;only 35-40% of LA was converted to conjugated linoleic acid (CLA) or vaccenic acid (VA) within 24 h of incubation, whereas in the control treatment, 100% of LA was converted within 24 h. Addition of VFA or vitamins did not affect biohydrogenation activity or CLA production. Culturing rumen fungi at pH 6.0 slowed biohydrogenation compared with pH 6.5 or 7.0. CLA production was reduced by pH 6.0 compared with control (pH 6.5), but was higher with pH 7.0. Biohydrogenation of LA to VA was complete within 72 h at pH 6.0, 24 h at pH 6.5, and 48 h at pH 7.0. It is concluded that optimum conditions for biohydrogenation of LA and for CLA production by rumen fungi were provided without addition of soluble carbohydrates, VFA or vitamins to the culture medium; optimum pH was 6.5 for biohydrogenation and 7.0 for CLA production.     

Diversity and occurrence of Burkholderia spp. in the natural environment

Both in natural and in managed ecosystems, bacteria are common inhabitants of the phytosphere and the internal tissues of plants. Probably the most diverse and environmentally adaptable plant-associated bacteria belong to the genus Burkholderia. This genus is well-known for its human, animal and plant pathogenic members, including the Burkholderia cepacia complex. However, it also contains species and strains that are beneficial to plants and can be potentially exploited in biotechnological processes. Here we present an overview of plant-associated Burkholderia spp. with special emphasis on beneficial plant-Burkholderia interactions. A discussion of the potential for utilization of stable plant-Burkholderia spp. associations in the development of low-input cropping systems is also provided.     

Diversity of endophytic fungi in the roots of mangrove species on the west coast of India

Because mangrove plant species are a valuable source of useful metabolites, their endophytes have gained more importance. Randomly sampled surface-sterilized whole root segments of four mangrove plant species, Acanthus ilicifolius, Avicennia officinalis, Rhizophora mucronata, and Sonneratia caseolaris from the mangroves of Udyavara (Karnataka) on the west coast of India, were characterized for fungal communities by direct plating, damp chamber, and bubbling chamber incubation methods. The richness of endophytic fungal species from whole root segments after direct plating and damp chamber incubation was greatest for R. mucronata than for other plants (18 vs. 8-13). Incubation of whole root segments in bubbling chambers yielded conidia of two freshwater hyphomycetes: Mycocentrospora acerina (in Avicennia officinalis) and Triscelophorus acuminatus (in R. mucronata and in S. caseolaris). Surface-sterilized whole root and root bark segments of R. mucronata sampled from the mid-tide level on direct plating yielded more fungi than that of the root segments sampled from low-tide and high-tide levels. The greatest number of isolates, species richness, and diversity of fungi were shown by the whole root segments of R. mucronata from the mid-tide level. Rarefaction indices also revealed the highest expected number of species out of 150 random isolations from the mid-tide level samples of whole root and root bark segments of R. mucronata. The present study showed that fungi in mangrove roots are composed of a consortium of soil, marine, and freshwater fungi.