Methods of pH calibration of sedimentary diatom remains for reconstructing history of pH in lakes

The pH history of lakes can be inferred from diatom remains in dated sediment cores. To derive transfer functions for pH inference in acidic lakes, we counted diatoms in surface-sediment from 31 soft-water lakes in n. New England (NE) and 36 in Norway (N), covering pH 4.4–7.1. Cluster analysis of each data set indicates that pH 6 is an upper limit for a group of similar diatom assemblages. For each set, we developed multiple linear regressions to relate three versions of the diatom data to pH of surface-waters: (1) relative frequencies of selected diatom taxa, (2) the first principal component (1 PC) of these frequencies, and (3) the frequencies of Hustedt pH groups. Also, simple linear regressions were developed for two versions: (1) Index B and (2) Index Alpha, both based on pH groups. Regressions were run separately for lakes with pH 6; these are most relevant for pH inference in acidic lakes. The best regressions (N: taxa & 1 PC taxa) have r² 0.69–0.91 and S_e 0.24–0.31 pH units, the worst (NE: log alpha) have r² 0.27–0.57 and S_e 0.51. In all cases, errors for NE are greater than N, partly due to greater diversity of NE lakes. Regressions based on pH groups (directly & by indices) have smaller r² and larger S_e than those based on taxa and 1 taxa. The Index Alpha is least useful because its requirement for alkaline diatom units is unsatisfied at many acidic lakes. Regressions based on taxa may give erratic pH inferences due to sensitivity to unusual frequencies of individual taxa; this effect is reduced by using 1 PC taxa. Four regressions based on pH 6 lakes were used for inferring pH in a ²¹⁰Pb dated core from Nedre Målmesvatn, N (now pH 4.6). There is good agreement among three of the four (not for the regression based directly on taxa) that there has been a decrease of ca. 0.6 pH units starting in the late 1800's.     

Relationships between lakewater pH and sedimentary diatoms in the Matamek Watershed,Northeastern Quebec,Canada

Twenty lakes in the Matamek and nearby watersheds were sampled in the summer of 1983 for water chemistry and surficial sediments. Thirty-two physical and chemical variables, including pH, alkalinity, cations and metal concentrations were measured on samples from the epilimnion and hypolimnion of each lake. In three lakes, two to four replicate cores were collected to estimate spatial variability of the sediment flora.All lakes were acidic (pH 4.59 to 5.80), highly colored and poorly buffered. Aluminum and magnesium concentrations reached 494 and 70 µg l^-1, respectively. The pH of the lakes appears to be declining, as indicated by a comparison of our results with those from a survey done in 1970. An empirical chemical model based on the alkalinity/sulfate ratio and the regression of pH on calcium also indicated that these lakes may be undergoing acidification.Analyses of the diatom flora of the surficial sediments showed strong dominance of 6 species that cooccurred with a large number of rare species (in all, 229 taxa were found). Variability among samples within a lake was as high as among lakes. Calculation of Nygaard's alpha index for each sample and the regression of its log-transformed value on surface pH yielded a relationship that was significantly from other published models. The regression model was applied to a down-core analysis of the diatom flora of the sediments of two lakes. Although the large confidence intervals on pH values predicted by the model obscured any evidence of pH change with sediment depth, there was a significant increase of acidophilous and a decrease of circumneutral species over time, suggesting that a change in the flora, possibly correlated with pH, is taking place.In making comparisons among lakes, the surficial-sediment flora did not provide clear evidence of a relationship with the pH of surface water. Indices computed from the surficial-sediment flora are apparently insensitive to differences in pH over a narrow range, particularly when the lakes being compared are similar chemically. Nygaard's alpha index is shown to be unduly sensitive to outliers. The currently accepted assumption of a progressive linear change in communities may be inadequate for the quantification of acidification processes. Other models, derived from catastrophe theory, may prove more fruitful.     

The evolutionary species pool hypothesis and patterns of freshwater diatom diversity along a pH gradient

Aim To interpret the unimodal relationship between diatom species richness and lake pH within the context of the evolutionary species pool hypothesis (SPH). We test the following primary prediction arising from the SPH: the size of the potential species pool (PSP) will increase along a gradient representing the historical commonness of different pH environments (pH commonness). To do this we assume that the present‐day spatial dominance of near‐neutral pH conditions compared with acidic and alkaline conditions reliably mimics the relative spatial availabilities of historical pH conditions among freshwater lakes. We also determine whether local richness represents a constant proportion of PSP size along the pH commonness gradient. Location Two hundred and thirty‐four lakes distributed over a 405,000 km² region of the north‐eastern United States of America. Methods Sediment diatom morphospecies lists and pH data were acquired from the US Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) website. Using 248 morphospecies that occurred in at least 10 of the 234 lakes, four different measures of PSPs were calculated along the pH gradient. Local species richness was equated with the number of species occurring within the lake. Alpha diversity was equated with the average species richness of lakes with similar pH values. A combination of statistical methods were employed, including correlations, quadratic regression and piecewise regression. Results PSP size increased significantly with pH commonness for all four measures of PSP size, thus supporting the primary prediction of the evolutionary SPH. Local richness comprised a larger proportion of the PSP within acidic lakes than within circumneutral lakes. Alpha diversity and lake species richness both increased significantly with pH commonness, but the former did so in a two‐step fashion. We test and reject several alternative contemporary time‐scale explanations for our findings. Main Conclusions Our findings are consistent with the hypothesis that diatom taxonomic richness is presently lower within acidic and highly alkaline lakes than in circumneutral lakes owing to the limited opportunity in space and/or time for the evolution of suitably adapted species. Whereas ecological processes can explain why certain species are excluded from particular habitats, e.g. acidic lakes, they cannot account for why so few species are adapted to those habitats in the first place.     

Diatom distribution and diatom inferred pH in the sediment of four alpine lakes

The diatom distribution in the sediment of four alpine lakes in the central alpine area (Ötztaler Alpen, Tyrolia, and Mölltal, Carinthia) has been analysed in order to assess possible influences of atmospheric pollutants on remote lakes. The lakes are located more than 2000 m above sea level on poorly buffered bedrock (granite, gneiss and mica schist) and are therefore susceptible to acidification by acid deposition. The pH history of the lakes has been calculated by using Index B from Renberg & Hellberg (1982), which has been adjusted to central European conditions and applied in this region for the first time. The results indicate that there have been no pH decreases in three of the lakes, while in one lake diatom composition and distribution change significantly towards the sediment surface. But taxonomical problems and difficulties in the pH classification of the rarely found diatoms complicate the interpretation of the results. Important taxa will be discussed in view of their ecological significance.     

Correlation of surface sediment diatoms with the present lake water pH in 28 Algoma lakes,Ontario, Canada

The surface sediment diatom analysis of 28 Algoma lakes (pH 4.40–8.13) indicates that even though each lake has a widely different aquatic environment and characteristic diatom assemblage, a definite relationship exists between the lake water pH and their diatom assemblages. In the acidic lakes acidobiontic and acidophilous diatom species predominate whereas in circumneutral and alkaline lakes circumneutral and alkaliphilous diatoms were most common. Cluster analysis of the pH indicator diatom assemblages grouped the study lakes into three distinct cluster groups. These groups also closely corresponded to lake water pH. On the basis of published ecological information as well as their presence in our study lakes, the pH indicator status of a number of diatom taxa have been discussed. A detailed listing of the diatom taxa identified and their pH indicator status is provided in order to facilitate their use in future diatom-inferred pH studies.     

Changes in diatom-inferred pH and add neutralizing capacity in a dilute, high elevation, Sierra Nevada lake since A.D. 1825

SUMMARY. 1. We developed equations which describe relationships between the relative abundance of diatom assemblages in the surface sediments of twenty-seven Sierra Nevada lakes and the present pH and acid neutralizing capacity in these lakes.
2. These equations were employed to reconstruct pH and acid neutralizing capacity at twenty-four depth intervals in a 20 cm long sediment core from Emerald Lake, a dilute, high elevation lake, located in Sequoia National Park, California, U.S.A.
3. The diatom-inferred pH and acid neutralizing capacity values indicated that neither pH nor acid neutralizing capacity exhibited significant trends since about A.D. 1825. We conclude from our diatom analysis that Emerald Lake has not been affected by acidic deposition.     

The relationship between surface sediment diatom assemblages and pH in 33 Galloway lakes: Some regression models for reconstructing pH and their application to sediment cores

The species composition of surface sediment diatom assemblages in 33 Galloway lakes, pH range c. 4.5 to 7.4, is related in a statistically significant manner to water acidity (or to factors closely associated with pH). Predictive models of summer mean pH, using simple regression equations of Index B (Renberg & Hellberg, 1982) with both Scandinavian and Galloway data sets, and multiple regression equations using diatom pH preference groups and individual species, are described and applied to fossil diatoms in six sediment cores. Although multiple regression of individual species gives the highest correlation coefficient (r²=0.87) in the modern data set this method is least appropriate for reconstructing pH values from fossil material where predictor species are often absent. Of the four methods examined here it is suggested that multiple regression of diatom preference groups is probably the most suitable for pH reconstructions from sediment cores.     

Long-term lake acidification trends in high- and low-sulphate deposition regions from Nova Scotia,Canada

Diatom-based paleolimnological techniques were used to study 14 lakes from two regions of Nova Scotia which represent regions of high and low sulphate deposition. Using decadal scale intervals, changes in diatom assemblages and diatom-inferred pH were tracked in relation to deposition of anthropogenic-sourced strong acids. Eight study lakes were located in Kejimkujik National Park in the southwestern part of the province, which receives an annual sulphate deposition (2000–2002) of ~10.5 kg ha⁻¹ yr⁻¹. These lakes showed significant changes in diatom assemblages with overall diatom-inferred acidification of ~0.5 pH units starting between 1925 and 1940, with the timing of acidification related to pre-industrial (or pre−1850) lakewater pH. Six study lakes were located in Cape Breton Highlands National Park, in northern Nova Scotia, a region of lower sulphate deposition. These lakes did not show any consistent trends in diatom assemblages or inferred pH values consistent with recent acidic deposition, but rather variations that may be related to climatic influences. Nova Scotia lakes that have been most impacted by acidic deposition had the lowest pre-industrial lakewater pH values and were in an area of relatively high sulphate deposition. Handling editor: K. Martens     

Recent ecological and biogeochemical changes in alpine lakes of Rocky Mountain National Park (Colorado, USA): a response to anthropogenic nitrogen deposition

Dated sediment cores from five alpine lakes (>3200 m asl) in Rocky Mountain National Park (Colorado Front Range, USA) record near‐synchronous stratigraphic changes that are believed to reflect ecological and biogeochemical responses to enhanced nitrogen deposition from anthropogenic sources. Changes in sediment proxies include progressive increases in the frequencies of mesotrophic planktonic diatom taxa and diatom concentrations, coupled with depletions of sediment δ¹⁵N and C : N values. These trends are especially pronounced since approximately 1950. The most conspicuous diatoms to expand in recent decades are Asterionella formosa and Fragilaria crotonensis. Down‐core species changes are corroborated by a year‐long sediment trap experiment from one of the lakes, which reveals high frequencies of these two taxa during autumn and winter months, the interval of peak annual limnetic []. Although all lakes record recent changes, the amplitude of stratigraphic shifts is greater in lakes east of the Continental Divide relative to those on the western slope, implying that most nitrogen enrichment originates from urban, industrial and agricultural sources east of the Rocky Mountains. Deviations from natural trajectories of lake ontogeny are illustrated by canonical correspondence analysis, which constrains the diatom record as a response to changes in nitrogen biogeochemistry. These results indicate that modest rates of anthropogenic nitrogen deposition are fully capable of inducing directional biological and biogeochemical shifts in relatively pristine ecosystems.     

Relationship Between Surface Sediment Diatoms and Summer Water Quality in Shallow Lakes of the Middle and Lower Reaches of the Yangtze River

The relationship between surface sediment diatoms and summer water quality was investigated at 49 lakes in the middle and lower reaches of the Yangtze River. Lakes ranging from oligomesotrophic to hypereutrophic were examined, providing an obvious nutrient gradient. With the shift from mesotrophic to eutrophic levels, diatom multi-ecotypes dominated by epiphytic and facultative planktonic taxa were replaced by nutrient-tolerant planktonic taxa, such as Cyclotella meneghiniana Skvortzow, C. atomus Hustedt,Cyclostephanos Round, and Stephanodiscus Ehrenberg etc., reflecting the nutrient changes in the lake.The relationship between diatoms and summer water quality indices was explored further using numeric analysis. Canonical correspondence analysis (CCA) with forward selection and a Monte Carlo permutation test revealed that of all 25 summer water environmental variables, total phosphorus (TP), chlorophyll a (Chzl a), Secchi depth (SD), dissolved inorganic phosphorus, C1-, SO42-, Mg2 , CO32-, and water depth were significant variables (P＜0.05) in explaining diatom distributions. Of these, TP, Chl a, SD, and C1-, were the most important variables. The result of the correlation analysis also showed that a significant correlation exists among these variables, implying that these indices are either interconnected or independent in explaining the diatom data. For phosphorus-limited sites, TP was the most significant variable affecting the diatoms, also affecting changes in Chl a, SD, and iron concentrations. The independence of Chl a may be related to algal competition induced by lake eutrophication, resulting in the feedback to diatom community.In addition to TP, SD can be related to sediment disturbance by wave action and the growth of macrophytes in large shallow lakes. These relationships between diatom ecotypes and water quality provide the basis for a future quantitative reconstruction of historic lake nutrient evolution in the study area and will also provide a wealth of modern ecological knowledge that can be used to interpret fossil diatom records.     

Relationship Between Surface Sediment Diatoms and Summer Water Quality in Shallow Lakes of the Middle and Lower Reaches of the Yangtze River

The relationship between surface sediment diatoms and summer water quality was investigated at 49 lakes in the middle and lower reaches of the Yangtze River. Lakes ranging from oligomesotrophic to hypereutrophic were examined, providing an obvious nutrient gradient. With the shift from mesotrophic to eutrophic levels, diatom multi-ecotypes dominated by epiphytic and facultative planktonic taxa were replaced by nutrient-tolerant planktonic taxa, such as Cyclotella meneghiniana Skvortzow, C. atomus Hustedt, Cyclostephanos Round, and Stephanodiscus Ehrenberg etc., reflecting the nutrient changes in the lake. The relationship between diatoms and summer water quality indices was explored further using numeric analysis. Canonical correspondence analysis (CCA) with forward selection and a Monte Carlo permutation test revealed that of all 25 summer water environmental variables, total phosphorus (TP), chlorophyll a (Chl a), Secchi depth (SD), dissolved inorganic phosphorus, Cl–, SO42–, Mg2+, CO32–, and water depth were significant variables (P<0.05) in explaining diatom distributions. Of these, TP, Chl a, SD, and Cl–, were the most important variables. The result of the correlation analysis also showed that a significant correlation exists among these variables, implying that these indices are either interconnected or independent in explaining the diatom data. For phosphorus-limited sites, TP was the most significant variable affecting the diatoms, also affecting changes in Chl a, SD, and iron concentrations. The independence of Chl a may be related to algal competition induced by lake eutrophication, resulting in the feedback to diatom community. In addition to TP, SD can be related to sediment disturbance by wave action and the growth of macrophytes in large shallow lakes. These relationships between diatom ecotypes and water quality provide the basis for a future quantitative reconstruction of historic lake nutrient evolution in the study area and will also provide a wealth of modern ecological knowledge that can be used to interpret fossil diatom records.     

The ratio of diatom frustules to chrysophycean statospores: A useful paleolimnological index

Stratigraphic analyses of the postglacial sediments of Little Round Lake and the recent sediments of two additional southern Ontario lakes were used to compare the relative abundance of fossil diatom frustules to chrysophycean statospores. Relatively few statospores were recorded during eutrophic phases in the lakes' histories such as during periods of anthropogenic activity in the lakes' catch me nt, when diatom frustules were abundant. The increased relative abundance of statospores during the early postglacial in Little Round Lake was attributed to both oligotrophy and a short growing season, conditions that currently exist in many high arctic lakes. From these data it is seen that the ratio of fossil diatom frustules to chrysophycean statospores may provide a useful paleolimnological index of trophic status in temperate lakes. The advantages of this index include its simplicity, the fact that frustules and statospores can be enumerated from the same microscope slides, and that the ratio is independent of sedimentation rates.     

Freshwater diatoms from Ile de la Possession (Crozet Archipelago, sub-Antarctica): an ecological assessment

An ecological study of freshwater waterbodies on Ile de la Possession (Crozet Archipelago, Antarctica) was undertaken during the austral summer of 1997/1998. Both diatom and chemistry data were collected. A highly diverse diatom flora of 210 taxa, belonging to 32 genera, was identified from 127 samples. The most abundant genera were Fragilaria, Achnanthes and Navicula. Principal Component Analysis was used to classify the samples on the basis of their chemical characteristics. The analysis revealed that pH and chloride were the main factors dividing the samples into three categories: rivers, more acid lakes, and lakes with higher chloride content. Species assemblages correspond well with this division. Forward selection with Monte Carlo permutations selected pH, chloride, habitat and hardness. Based on the analysis, four groups of samples can be made: rivers, acid lakes, circumneutral lakes with low chloride concentrations and coastal pools with relatively high chloride levels. The results also indicate that a specific diatom flora exists on the island, which is comparable to that of other islands in the same area (Kerguelen and Macquarie). Accepted: 29 March 1999     

Fossil diatom inferred reconstruction of the pH history of two acidic,clear water lakes from insular Newfoundland,Canada

Palaeoecological research has been used to evaluate the impact of acidic deposition on lakes in insular Newfoundland. Terrestrial organic deposits in the region have considerable influence on freshwaters and have placed constrains on interpretation of the degree of anthropogenic acidification. In this paper, a region-specific calibration equation unique to clear water lakes (colour values 15) is developed from diatom assemblages in surface sediments from 22 lakes. The inferred pH history of two acidic, clear water lakes is then developed with a view to eliminating the influence of organic acidity from the interpretation of historical acid-base chemistry. The pH histories of the two lakes suggest modest declines (0.3 to 0.4 unit) in the most recent strata (i.e. since the 1930's). Both lakes demonstrate an increase in inferred pH in the surface horizon, which is consistent with declines in acidic deposition in the region since the mid 1970's. The magnitude and timing of the pH trends in these two lakes is common to those previously developed from more highly coloured lakes. The similar magnitude and onset of pH declines in lakes with varying amounts of organic influence provides no palaeolimnological evidence to suggest a contribution to, or modification of, lake acidification by organic acids.     

Shifts in taxonomical and guild composition of littoral diatom assemblages along environmental gradients

Diatoms are commonly and frequently used as water quality indicators, but only a few studies have been done to evaluate the importance of littoral, contemporary diatoms as bioindicators. This study aims to determine the main predictors of diatom community composition from 73 Swedish lakes. Canonical correspondence analysis (CCA) revealed pH, phosphate, nitrite/nitrate levels, longitude and percentage of forest in the catchment to be the most important factors of 51 environmental variables for structuring diatom assemblages. Cluster analysis separated the lakes into three groups based on the diatom community composition. Lakes belonging to these groups were characterised as: (1) acidic, nutrient-poor; (2) circumneutral, nutrient-poor and (3) alkaline, nutrient-rich, according to the results of a discriminant function analysis and dominant diatom taxa revealed by similarity percentage analysis. Ecological guilds according to growth morphology and the ability of nitrogen-fixation were assigned to all diatom taxa. All three lake groups exhibited a distinct guild composition. Nitrogen-fixing diatoms were found in nutrient-rich lakes, only. Our results indicate that taxonomical composition of littoral diatom assemblages can be applied in the assessment of nutrient and acidity status of Swedish lakes. Differences in distribution of the ecological guilds were connected to several environmental factors such as nutrients, light and grazing; their application in assessment of trophic status of lakes is therefore precarious.     

Sedimentary diatom concentrations and accumulation rates as predictors of lake trophic state

Diatom concentrations in surface sediments are positively correlated with limnetic chlorophyll a concentrations in Florida (USA) lakes. Using this relationship, I examine models that provide quantitative inferences for trophic state in historical applications.The best model predicts chlorophyll a trophic state index (TSI) values from log-transformed diatom concentrations and explains approximately half the variance in the dependent variable. Diatom accumulation rates are not better than sedimentary diatom concentrations as predictors of TSI. The entire diatom assemblage is as sensitive an indicator of TSI as are the planktonic diatoms alone. A model that considers the ecological preferences of specific taxa was found to be a better predictor than the model based on total diatom concentration.The sedimentary diatom concentration model provides a useful method for assessing historical changes in primary productivity, except in lakes where factors (e.g., silica limitation, blue-green bacterial inhibition) limited diatom production, or post-depositional changes removed sedimentary diatoms. TSI inferences are presented for sediment cores from two Florida lakes, one of which demonstrates a problematic application, and the other of which does not.     

Testing of the applicability of European diatom indices in the tropical rift valley lake,Lake Hawassa,in Ethiopia

Quantitative ecological monitoring of African lakes is needed to understand growing human pressures on ecosystems. Diatom-based indices are routinely used for this purpose elsewhere in the world, but have not yet been produced for the flora of African freshwater lakes. Here we tested the applicability of the European diatom indices on the biomonitoring system of Lake Hawassa, Ethiopia. Physico-chemical and benthic diatom sampling was done at nine sites with different degrees of human disturbance along the lakeshore area from February to November 2015 and 2016. A percentage disturbance score (PDS) was calculated at each site and categorised from no evident disturbance (0–25%) to high disturbance (75–100%). Based on this criterion and selected physico-chemical parameters, the sampling sites categorized into minimal, moderate and high disturbance. Seventeen diatom indices were calculated using Omnidia software version 5.3. Out of a total of 17 indices that were calculated using the Omnidia software, six were selected as potential metrics. The diatom indices had a high discrimination efficiency and were significantly correlated with most the environmental parameters (r > 0.6; p < 0.05). Among these, the trophic diatom index (TDI) and generic diatom index (IDG) showed the best potential to discriminate the three clustered sites, based on their ecological classification. Accordingly, although robust locally based indices are needed, the TDI and IDG diatom indices could be used in monitoring of water quality in tropical African rift lakes.     

PERIPHYTIC DIATOM ASSEMBLAGES FROM BATHURST ISLAND, NUNAVUT, CANADIAN HIGH ARCTIC: AN EXAMINATION OF COMMUNITY RELATIONSHIPS AND HABITAT PREFERENCES

Diatoms are potentially the most important biomonitors of environmental change in high arctic lakes and ponds, but to date few autecological data are available. Because of the shallow nature of many of these water bodies, a large proportion of taxa are periphytic and planktonic diatoms are absent for the most part. By determining the microhabitat and substrate preferences of these benthic diatom taxa, the potential exists to infer past changes in available habitats from fossil diatom assemblages collected from sediment cores and ultimately to reconstruct past environmental and climatic changes responsible for these shifts in habitat availability. To refine our understanding of high arctic diatom habitat preference, the common diatom taxa found on submerged moss (bryophyte), sediment, and rock substrates from lakes and ponds on Bathurst Island, Nunavut, Canadian High Arctic were examined. The relationships among key limnological variables and the common taxa from each habitat were examined. Many diatom taxa exhibited varying degrees of microhabitat preference, with moss representing the more unique habitat. In addition, the following limnological variables significantly ( P ≤ 0.05) explained the species variance for each of the three substrates: Na ⁺ and total nitrogen for moss; total phosphorus (filtered) and pH for rock; and Fe^{3 +} , total phosphorus (unfiltered), total nitrogen, temperature, and pH for sediment. These data can be used to help interpret monitoring and paleolimnological studies in this environmentally sensitive region.