Nematode communities inhabiting the soft deep-sea sediment in polymetallic nodule fields: do they differ from those in the nodule-free abyssal areas?

This study addresses whether or not nematode assemblages inhabiting the soft sediment in abyssal nodule fields are unique and differ from those occurring in the nodule-free abyssal areas. This question is important for the evaluation of possible diversity losses caused by nodule mining operations. The analysis involved seven datasets at genus-level of nematode assemblages from three nodule-bearing abyssal areas in the Pacific (the Clarion-Clipperton Fracture Zone or CCFZ, and the Peru Basin) and the Indian Ocean (CIOB), and five datasets from nodule-free abyssal regions (the Atlantic Ocean). Only individuals identified to valid genera were used in the analysis. Overall, more than 20,000 nematode individuals from 90 samples were analysed. The analyses showed that the nematode communities in the nodule fields did differ from those in the nodule-free abyss. The nodule fields are characterized by a higher microhabitat heterogeneity, which resulted in a higher diversity of nematode communities inhabiting the nodule fields. However, one set of dominant taxa (Monhysteridae, Microlaimus, Acantholaimus, Theristus and Desmoscolex) was identical for both the nodule-bearing and nodule-free abyss, although some genera were strongly and significantly associated with either the nodule-free abyss (Microlaimus) or the nodule-bearing abyssal regions (Capsula). On the other hand, nematode assemblages at nodule-bearing and nodule-free sites within the nodule-bearing abyss proved to be similar at the genus level. This makes it possible for the nodule-free sites to serve as donors of colonizers for the mining-impacted nodule-bearing abyss. However, this suggestion has to be treated with caution, because the species-level differences have not been tested yet.     

History of Ichnology: John Joly (1857–1933) on Oldhamia: Poetic and Scientific Observations

John Joly was an Irish engineer and geologist who in the 1880s attempted to explain the formation of Cambrian markings known as Oldhamia to the freezing of sediment and the development of surface frost. He also noted differences in the preservation of two forms of Oldhamia when found together in the same bed; these were either as a positive or negative. Oldhamia also inspired Joly to write a sonnet in which he considered geochronology, denudation and the history of life. A detailed interpretation of Joly's sonnet is provided for the first time.     

Filmed Dreams: Cinematographic and Story Line Characteristics of the Cinematic Dreamscapes of John Sayles

The authors characterize the filmed dreamscapes of John Sayles though a structured interview with the screenwriter/director and an analysis of cinematographic and story line techniques utilized in creating dreamscapes in two of his films. The filmmaker uses complex techniques to produce believable dreams in otherwise naturalistic films by isolating the dream sequence and altering sound, color, cinematography, story, time, visual perspective and physical properties of the perceived external reality of the dream. This perceptual and orienting framework required to produce a believable dream on film may reflect innate characteristics of the dream state.     

John Woolman's Light in the Night: An Analysis

This is an analysis of a religious experience in the night recorded in the journal of John Woolman, a colonial Quaker. As a basis for analysis, I try to clarify the data of Woolman's experience without presuppositions about causes, states of consciousness, three-dimensional space, or meaning. I then study the phenomena in the light of what we know about perception, dreaming, hallucinatory geometric forms, light, and other people's comparable experiences. Because different modalities of his experience appear to be in different states at the same time, I examine each part of his experience separately. There is discussion of the relationship of dreams to visions and hallucinations, the concept of discrete states of consciousness, and the distinction between simulation and authentic experience while dreaming. The article is both an analysis of a religious experience recorded in 1757 and a discussion of methods of analysis.     

JUSTICE, STIGMA, AND THE NEW EPIDEMIOLOGY OF HEALTH DISPARITIES

Recent research in epidemiology has identified a number of factors beyond access to medical care that contribute to health disparities. Among the so-called socioeconomic determinants of health are income, education, and the distribution of social capital. One factor that has been overlooked in this discussion is the effect that stigmatization can have on health. In this paper, I identify two ways that social stigma can create health disparities: directly by impacting health-care seeking behaviour and indirectly through the internalization of negative interpersonal judgments. I then argue that social arrangements that foster self-respect can reduce the impact of stigmatization on health disparities. I conclude by showing how John Rawls' conception of justice can be used to address the intersection of stigma, health, and self-respect, in contrast to critics of his position, who have seen him as excessively focused on the allocation of material goods.     

The effects of desiccation and rehydration on the lone star tick

This study describes the effects of desiccation and rehydration on the water content, haemolymph volume (per cent), osmolarity, and concentrations of Na, K, Mg, and Ca in the haemolymph of the lone star tick, Amblyomma americanum.The water content percentages of ‘severely desiccated’, ‘moderately’ and ‘fully hydrated’ ticks were 46·0, 52·8, and 60·3 per cent respectively. The lowest and highest of these were near the minimum and maximum possible.The haemolymph volume (per cent) of ‘severely desiccated’ ticks was regulated near the level of ‘moderately hydrated’ ticks despite significant decreases in total body water content and increases in osmolarity and concentration of sodium. Conversely, the change from ‘severely desiccated’ to ‘moderately hydrated’ ticks can be viewed as causing an increase in total body water, decrease in blood osmolarity and sodium, but little change in haemolymph volume (per cent).Most of the water taken up by ‘moderately hydrated’ ticks (while becoming ‘fully hydrated’) was added to the haemolymph. At the same time, there was little change in the blood osmolarity or haemolymph concentration of sodium. Conversely, the change of ‘fully’ to ‘moderately hydrated’ ticks was marked by a substantial loss of haemolymph volume (per cent) but little change in osmolarity and concentration of sodium.The concentration of potassium was regulated over the full range of desiccating and hydrating conditions. The lone star tick appeared less able to regulate its haemolymph concentrations of Ca and Mg; both fluctuated at the same rate, but inversely as the haemolymph volume (per cent).It appears that a carefully controlled movement of solutes (Na the predominant cation) between haemolymph and non-haemolymph tissue is intimately linked with haemolymph volume regulation and movement of water into the haemolymph during hydration.     

From structure to solutions: the role of basic research in developing anthrax countermeasures: Microbiology Graduate Program Seminar: Anthrax toxin

Dr. John Collier traced the discoveries that elucidated the structure and function of the anthrax toxin in his talk "Anthrax Toxin," which was part of the Microbiology Graduate Program Seminar Series at Yale School of Medicine on February 23, 2012. Dr. Collier, Professor of Microbiology and Immunobiology at Harvard University, began by noting the advantages to studying anthrax pathogenesis in a biosafety level-1 lab. This designation does not merely facilitate his research, but also reflects a larger trend of basic research being leveraged to develop translational applications. Basic research on toxin structure has led to the development of a vaccine by Dr. Collier's group. Next-generation prophylactics also may stem from recent discoveries uncovering a role for cellular cofactors that mediate toxin function. Finally, basic research into the toxin substructure has facilitated efforts to change the receptor tropism to target dysregulated cells for therapeutic purposes. The urgency around biodefense agents makes the choice of research priorities a salient issue. As such, this author submits that basic research occupies a unique and lucrative niche driving clinical applications.     

An aryl hydrocarbon hydroxylating hepatic cytochrome P-450 from the marine fish Stenotomus chrysops

Hepatic microsomal cytochrome P-450 from the untreated coastal marine fish scup, Stenotomus chrysops, was solubilized and resolved into five fractions by ion-exchange chromatography. The major fraction, cytochrome P-450E (M_r = 54,300), was further purified to a specific content of 11.7 nmol heme/mg protein and contained a chromophore absorbing at 447 nm in the CO-ligated, reduced difference spectrum. NH₂-terminal sequence analysis of cytochrome P-450E by Edman degradation revealed no homology with any known cytochrome P-450 isozyme in the first nine residues. S. chrysops liver NADPH-cytochrome P-450 reductase, purified 225-fold (M_r = 82,600), had a specific activity of 45–60 U/mg with cytochrome c, contained both FAD and FMN, and was isolated as the one-electron reduced semiquinone.Purified cytochrome P-450E metabolized several substrates including 7-ethoxycoumarin, acetanilide, and benzo[a]pyrene when reconstituted with lipid and hepatic NADPH-cytochrome P-450 reductase from either S. chrysops or rat. The purified, reconstituted monooxygenase system was sensitive to inhibition by 100 μM 7,8-benzoflavone, and analysis of products in reconstitutions with purified rat epoxide hydrolase indicated a preference for oxidation on the benzo-ring of benzo[a]pyrene consistent with the primary features of benzo[a]pyrene metabolism in microsomes. Cytochrome P-450E is identical to the major microsomal aromatic hydrocarbon-inducible cytochrome P-450 by the criteria of molecular weight, optical properties, and catalytic profile. It is suggested that substantial quantities of this aromatic hydrocarbon-inducible isozyme exist in the hepatic microsomes of some untreated S. chrysops. The characterization of this aryl hydrocarbon hydroxylase extends our understanding of the metabolism patterns observed in hepatic microsomes isolated from untreated fish.