Landscape-moderated biodiversity effects of agri-environmental management: a meta-analysis

Agri-environmental management (AEM) is heralded as being key to biodiversity conservation on farmland, yet results of these schemes have been mixed, making their general utility questionable. We test with meta-analysis whether the benefits of AEM for species richness and abundance of plants and animals are determined by the surrounding landscape context. Across all studies (109 observations for species richness and 114 observations for abundance), AEM significantly increased species richness and their abundance. More specifically, we test the hypothesis that AEM benefits species richness and abundance (i.e. increases the difference between fields with and without AEM) more in simple than in complex landscapes. In croplands, species richness but not abundance was significantly enhanced in simple but not in complex landscapes. In grasslands, AEM effectively enhanced species richness and abundance regardless of landscape context. Pollinators were significantly enhanced by AEM in simple but not in complex landscapes in both croplands and grasslands. Our results highlight that the one-size-fits-all approach of many agri-environmental programmes is not an efficient way of spending the limited funds available for biodiversity conservation on farmland. Therefore, we conclude that AEM should be adapted to landscape structure and the species groups at which they are targeted.     

State of knowledge of coastal and marine biodiversity of Indian Ocean countries

The Indian Ocean (IO) extends over 30% of the global ocean area and is rimmed by 36 littoral and 11 hinterland nations sustaining about 30% of the world's population. The landlocked character of the ocean along its northern boundary and the resultant seasonally reversing wind and sea surface circulation patterns are features unique to the IO. The IO also accounts for 30% of the global coral reef cover, 40,000 km2 of mangroves,some of the world's largest estuaries, and 9 large marine ecosystems. Numerous expeditions and institutional efforts in the last two centuries have contributed greatly to our knowledge of coastal and marine biodiversity within the IO. The current inventory, as seen from the Ocean Biogeographic Information System, stands at 34,989 species, but the status of knowledge is not uniform among countries. Lack of human, institutional, and technical capabilities in some IO countries is the main cause for the heterogeneous level of growth in our understanding of the biodiversity of the IO. The gaps in knowledge extend to several smaller taxa and to large parts of the shelf and deep-sea ecosystems, including seamounts. Habitat loss, uncontrolled developmental activities in the coastal zone, over extraction of resources, and coastal pollution are serious constraints on maintenance of highly diverse biota, especially in countries like those of the IO, where environmental regulations are weak.     

Open exchange of scientific knowledge and European copyright: The case of biodiversity information

Background. The 7^th Framework Programme for Research and Technological Development is helping the European Union to prepare for an integrative system for intelligent management of biodiversity knowledge. The infrastructure that is envisaged and that will be further developed within the Programme “Horizon 2020” aims to provide open and free access to taxonomic information to anyone with a requirement for biodiversity data, without the need for individual consent of other persons or institutions. Open and free access to information will foster the re-use and improve the quality of data, will accelerate research, and will promote new types of research. Progress towards the goal of free and open access to content is hampered by numerous technical, economic, sociological, legal, and other factors. The present article addresses barriers to the open exchange of biodiversity knowledge that arise from European laws, in particular European legislation on copyright and database protection rights.We present a legal point of view as to what will be needed to bring distributed information together and facilitate its re-use by data mining, integration into semantic knowledge systems, and similar techniques. We address exceptions and limitations of copyright or database protection within Europe, and we point to the importance of data use agreements. We illustrate how exceptions and limitations have been transformed into national legislations within some European states to create inconsistencies that impede access to biodiversity information.Conclusions. The legal situation within the EU is unsatisfactory because there are inconsistencies among states that hamper the deployment of an open biodiversity knowledge management system. Scientists within the EU who work with copyright protected works or with protected databases have to be aware of regulations that vary from country to country. This is a major stumbling block to international collaboration and is an impediment to the open exchange of biodiversity knowledge. Such differences should be removed by unifying exceptions and limitations for research purposes in a binding, Europe-wide regulation.     

Food biodiversity and total and cause-specific mortality in 9 European countries: An analysis of a prospective cohort study

BackgroundFood biodiversity, encompassing the variety of plants, animals, and other organisms consumed as food and drink, has intrinsic potential to underpin diverse, nutritious diets and improve Earth system resilience. Dietary species richness (DSR), which is recommended as a crosscutting measure of food biodiversity, has been positively associated with the micronutrient adequacy of diets in women and young children in low- and middle-income countries (LMICs). However, the relationships between DSR and major health outcomes have yet to be assessed in any population.Methods and findingsWe examined the associations between DSR and subsequent total and cause-specific mortality among 451,390 adults enrolled in the European Prospective Investigation into Cancer and Nutrition (EPIC) study (1992 to 2014, median follow-up: 17 years), free of cancer, diabetes, heart attack, or stroke at baseline. Usual dietary intakes were assessed at recruitment with country-specific dietary questionnaires (DQs). DSR of an individual’s yearly diet was calculated based on the absolute number of unique biological species in each (composite) food and drink. Associations were assessed by fitting multivariable-adjusted Cox proportional hazards regression models. In the EPIC cohort, 2 crops (common wheat and potato) and 2 animal species (cow and pig) accounted for approximately 45% of self-reported total dietary energy intake [median (P₁₀–P₉₀): 68 (40 to 83) species consumed per year]. Overall, higher DSR was inversely associated with all-cause mortality rate. Hazard ratios (HRs) and 95% confidence intervals (CIs) comparing total mortality in the second, third, fourth, and fifth (highest) quintiles (Qs) of DSR to the first (lowest) Q indicate significant inverse associations, after stratification by sex, age, and study center and adjustment for smoking status, educational level, marital status, physical activity, alcohol intake, and total energy intake, Mediterranean diet score, red and processed meat intake, and fiber intake [HR (95% CI): 0.91 (0.88 to 0.94), 0.80 (0.76 to 0.83), 0.69 (0.66 to 0.72), and 0.63 (0.59 to 0.66), respectively; P_Wald < 0.001 for trend]. Absolute death rates among participants in the highest and lowest fifth of DSR were 65.4 and 69.3 cases/10,000 person-years, respectively. Significant inverse associations were also observed between DSR and deaths due to cancer, heart disease, digestive disease, and respiratory disease. An important study limitation is that our findings were based on an observational cohort using self-reported dietary data obtained through single baseline food frequency questionnaires (FFQs); thus, exposure misclassification and residual confounding cannot be ruled out.ConclusionsIn this large Pan-European cohort, higher DSR was inversely associated with total and cause-specific mortality, independent of sociodemographic, lifestyle, and other known dietary risk factors. Our findings support the potential of food (species) biodiversity as a guiding principle of sustainable dietary recommendations and food-based dietary guidelines.

Dr. Giles T. Hanley-Cook and colleagues, analyzed data from a prospective cohort study to investigate the association between food biodiversity, and total and cause-specific mortality in nine European countries.     

AFLP: a useful tool for biodiversity conservation and management

The access to new molecular markers is not always possible for all researchers, due to limited laboratory and economical resources. A new technique, called AFLP, seems to be a simple and robust method to obtain a large number of variable molecular markers. In this article I show the results of AFLP analysis in three different conservation projects requiring different level of genetic variability. I also compare the multi-locus AFLP results with single-locus markers (microsatellites) and haploid organellar marker (mtDNA) sequences. The results suggest that the AFLP technique could be very useful in a wide range of conservation studies.     

Biodiversity knowledge synthesis at the European scale: actors and steps

To respond to the need for a strengthened biodiversity science-policy-society interface at the European level, this paper presents the relevant actors and steps of a knowledge synthesis process relying on a Network of Knowledge. This process aims to maximize active involvement and contribution (including holders of traditional and local knowledge), transparency, credibility, relevance and legitimacy (among other values defined during several workshops held). The presented process allows for the implementation of several synthesis methodologies, depending on the availability of resources, quantity and quality of knowledge and decided according to the expectations of the requesters and users. We put this approach in parallel with other knowledge-based recommendations and negotiation processes such as CBD and IPBES and highlight the need to encompass the diversity of approaches, values, and challenges at the European scale, while the process simultaneously has to be highly flexible, yet simple and robust. Although the presented process still holds several challenges, it offers a step forward in the development and reflections on science-policy–society interfaces, based on consultations with a significant number of the actors from the European policy–science community.     

The occurrence of cavities in fruit trees: effects of tree age and management on biodiversity in traditional European orchards

The formation of tree-cavities is an important ecological factor since many animals in woody habitats are cavity users. Recent research focuses on tree-cavity formation and the associated cavity networks in forest ecosystems. However, although traditional European orchards are important habitats for secondary cavity users, ecological research on the factors associated with the occurrence of cavities in fruit trees is widely missing. In particular, fruit tree pruning management may affect decay-cavity formation due to the pruning wounds allowing heart rot and decay to enter the tree. Here, we present a cross-sectional study investigating 608 fruit trees in 30 study plots of three European fruit-growing regions to identify factors associated with decay-cavity occurrence in fruit trees. Presence of decay-cavities was positively related to trunk diameter. Moreover, fruit trees of low vitality and with woodpecker-cavities featured more often decay-cavities than trees of high vitality or without woodpecker-cavities. Apple trees featured higher numbers of cavities at younger age than other fruit trees. Occurrence of decay-cavities was also related to the past removal of large main branches. Accordingly, traditional orchards are cavity-rich habitats if they comprise high proportion of old fruit trees, in particular apple trees, and if pruning management produces large pruning wounds. Thus, differential tree pruning and fruit-growing traditions across Europe result in different cavity densities in traditional orchards. Preservation of existing and potential cavity trees and selective removal of large branches from apple trees are recommended as conservation measures establishing high cavity densities and increasing the associated biodiversity in the agricultural landscape.     

Data exchange gaps in knowledge of biodiversity: implications for the management and conservation of Biosphere Reserves

The knowledge of species occurrence within an area is crucial to develop proper conservation strategies to protect species diversity. Biosphere Reserves (BRs), established to preserve biodiversity and sustainably use their resources, should therefore have precise information of its biodiversity. We compared and evaluated information on threatened and non-threatened vertebrate species available for Spanish BRs from three sources: management documents (MDs), the Global Biodiversity Information Facility index (GBIF), and atlases and red books. Our results suggest that information from any one source was rather partial, to a degree that depended on which vertebrate group was considered. Management documents did list a high percentage of threatened species found in BRs, reaching up to the total number of species of birds and mammals. Species lists overlap between all three sources ranged from 59 % for fish to 84 % for mammals. In addition, there is an inconsistency between national and international threatened species categories and it should thus call for revisions. Even though the information of non-threatened and threatened species occurrence in MDs of Spanish BRs is good, it is necessary to pay attention to amphibian and fish species which are less recorded.     

Towards a taxonomically unbiased European Union biodiversity strategy for 2030

Through the Habitats Directive (92/43/EEC) and the financial investments of the LIFE projects, Europe has become an experimental arena for biological conservation. With an estimated annual budget of €20 billion, the EU Biodiversity Strategy for 2030 has set an ambitious goal of classifying 30% of its land and sea territory as Protected Areas and ensuring no deterioration in conservation trends and the status of protected species. We analysed LIFE projects focused on animals from 1992 to 2018 and found that investment in vertebrates was six times higher than that for invertebrates (€970 versus €150 million), with birds and mammals alone accounting for 72% of species and 75% of the total budget. In relative terms, investment per species towards vertebrates has been 468 times higher than that for invertebrates. Using a trait-based approach, we show that conservation effort is primarily explained by species'' popularity rather than extinction risk or body size. Therefore, we propose a roadmap to achieve unbiased conservation targets for 2030 and beyond.     

Reinstitutionalisation in mental health care: comparison of data on service provision from six European countries

Objective To establish whether reinstitutionalisation is occurring in mental health care and, if so, with what variations between western European countries.Design Comparison of data on changes in service provision.Setting Six European countries with different traditions of mental health care that have all experienced deinstitutionalisation since the 1970s—England, Germany, Italy, the Netherlands, Spain, and Sweden.Outcome measures Changes in the number of forensic hospital beds, involuntary hospital admissions, places in supported housing, general psychiatric hospital beds, and general prison population between 1990-1 and 2002-3.Results Forensic beds and places in supported housing have increased in all countries, whereas changes in involuntary hospital admissions have been inconsistent. The number of psychiatric hospital beds has been reduced in five countries, but only in two countries does this reduction outweigh the number of additional places in forensic institutions and supported housing. The general prison population has substantially increased in all countries.Conclusions Reinstitutionalisation is taking place in European countries with different traditions of health care, although with significant variation between the six countries studied. The precise reasons for the phenomenon remain unclear. General attitudes to risk containment in a society, as indicated by the size of the prison population, may be more important than changing morbidity and new methods of mental healthcare delivery.     

Communication gaps in knowledge of freshwater fish biodiversity: implications for the management and conservation of Mexican biosphere reserves

To detect differences in the information available on freshwater fish species found in Mexican biosphere reserves, the number of species considered in three sources of information: management programmes, Global Biodiversity Information Facility (GBIF) and the scientific literature were compared. Additionally, management actions for the reserves were evaluated. More than 55% of freshwater fish species registered for the reserves were found only in one of the three sources of information, while just 12% was shared among all the three. Fifteen threatened species were registered in GBIF and the scientific literature that were not found in management programmes. Although all the management programmes described conservation actions, none of them gave details about how they would be implemented. Lack of communication among the sources studied, unawareness of the existence of threatened species and the absence of detailed management actions hinder the development of adequate conservation strategies.     

Integrating biodiversity distribution knowledge: toward a global map of life

Global knowledge about the spatial distribution of species is orders of magnitude coarser in resolution than other geographically-structured environmental datasets such as topography or land cover. Yet such knowledge is crucial in deciphering ecological and evolutionary processes and in managing global change. In this review, we propose a conceptual and cyber-infrastructure framework for refining species distributional knowledge that is novel in its ability to mobilize and integrate diverse types of data such that their collective strengths overcome individual weaknesses. The ultimate aim is a public, online, quality-vetted 'Map of Life' that for every species integrates and visualizes available distributional knowledge, while also facilitating user feedback and dynamic biodiversity analyses. First milestones toward such an infrastructure have now been implemented.     

Genephony: a knowledge management tool for genome-wide research

Background  

One of the consequences of the rapid and widespread adoption of high-throughput experimental technologies is an exponential increase of the amount of data produced by genome-wide experiments. Researchers increasingly need to handle very large volumes of heterogeneous data, including both the data generated by their own experiments and the data retrieved from publicly available repositories of genomic knowledge. Integration, exploration, manipulation and interpretation of data and information therefore need to become as automated as possible, since their scale and breadth are, in general, beyond the limits of what individual researchers and the basic data management tools in normal use can handle. This paper describes Genephony, a tool we are developing to address these challenges.     

Models for forest ecosystem management: a European perspective

BACKGROUND: Forest management in Europe is committed to sustainability. In the face of climate change and accompanying risks, however, planning in order to achieve this aim becomes increasingly challenging, underlining the need for new and innovative methods. Models potentially integrate a wide range of system knowledge and present scenarios of variables important for any management decision. In the past, however, model development has mainly focused on specific purposes whereas today we are increasingly aware of the need for the whole range of information that can be provided by models. It is therefore assumed helpful to review the various approaches that are available for specific tasks and to discuss how they can be used for future management strategies. SCOPE: Here we develop a concept for the role of models in forest ecosystem management based on historical analyses. Five paradigms of forest management are identified: (1) multiple uses, (2) dominant use, (3) environmentally sensitive multiple uses, (4) full ecosystem approach and (5) eco-regional perspective. An overview of model approaches is given that is dedicated to this purpose and to developments of different kinds of approaches. It is discussed how these models can contribute to goal setting, decision support and development of guidelines for forestry operations. Furthermore, it is shown how scenario analysis, including stand and landscape visualization, can be used to depict alternatives, make long-term consequences of different options transparent, and ease participation of different stakeholder groups and education. CONCLUSIONS: In our opinion, the current challenge of forest ecosystem management in Europe is to integrate system knowledge from different temporal and spatial scales and from various disciplines. For this purpose, using a set of models with different focus that can be selected from a kind of toolbox according to particular needs is more promising than developing one overarching model, covering ecological, production and landscape issues equally well.     

The Nature Index: a general framework for synthesizing knowledge on the state of biodiversity

The magnitude and urgency of the biodiversity crisis is widely recognized within scientific and political organizations. However, a lack of integrated measures for biodiversity has greatly constrained the national and international response to the biodiversity crisis. Thus, integrated biodiversity indexes will greatly facilitate information transfer from science toward other areas of human society. The Nature Index framework samples scientific information on biodiversity from a variety of sources, synthesizes this information, and then transmits it in a simplified form to environmental managers, policymakers, and the public. The Nature Index optimizes information use by incorporating expert judgment, monitoring-based estimates, and model-based estimates. The index relies on a network of scientific experts, each of whom is responsible for one or more biodiversity indicators. The resulting set of indicators is supposed to represent the best available knowledge on the state of biodiversity and ecosystems in any given area. The value of each indicator is scaled relative to a reference state, i.e., a predicted value assessed by each expert for a hypothetical undisturbed or sustainably managed ecosystem. Scaled indicator values can be aggregated or disaggregated over different axes representing spatiotemporal dimensions or thematic groups. A range of scaling models can be applied to allow for different ways of interpreting the reference states, e.g., optimal situations or minimum sustainable levels. Statistical testing for differences in space or time can be implemented using Monte-Carlo simulations. This study presents the Nature Index framework and details its implementation in Norway. The results suggest that the framework is a functional, efficient, and pragmatic approach for gathering and synthesizing scientific knowledge on the state of biodiversity in any marine or terrestrial ecosystem and has general applicability worldwide.     

Groundwater nutrient concentrations near an incised midwestern stream: effects of floodplain lithology and land management

It has been recognized that subsurface lithology plays an important role in controlling nutrient cycling and transport in riparian zones. In Iowa and adjacent states, the majority of alluvium preserved in small and moderate sized valleys consists of Holocene-age organic-rich, and fine-grained loam. In this paper, we describe and evaluate spatial and temporal patterns of lithology and groundwater nutrient concentrations at a riparian well transect across Walnut Creek at the Neal Smith National Wildlife Refuge in Jasper County, Iowa. Land treatment on one side of the stream reduced the grass cover to bare ground and allowed assessment of the effects of land management on nutrient concentrations. Results indicated that groundwater in Holocene alluvium is very nutrient rich with background concentrations of nitrogen, phosphorus and dissolved organic carbon that exceed many environmentally sensitive criteria. Average concentrations of ammonium exceeded 1 mg/l in several wells under grass cover whereas nitrate concentrations exceeded 20 mg/l in wells under bare ground. Phosphate concentrations ranged from 0.1 to 1.3 mg/l and DOC concentrations exceeded 5 mg/l in many wells. Denitrification, channel incision, land management and geologic age of alluvium were found to contribute to variable nutrient loading patterns at the site. Study results indicated that riparian zones of incised streams downcutting through nutrient-rich Holocene alluvium can potentially be a significant source of nutrient loadings to streams.     

The role of knowledge and spatial contexts in biodiversity policies: a sociological perspective

In policy processes, biodiversity has been broadened into a holistic notion uniting a variety of cultural, social and economic issues with the biological conservation issue. Therefore, the formation of biodiversity conservation into concrete policy goals appears rather difficult. In this paper, we aim to explore the political implications and consequences of the strong dependency on science of the biodiversity issue. Concentrating especially on environmental policy options, we also examine the globalization and localization processes in the case of biodiversity. In spite of several controversial features and of an evident lack of knowledge on biological diversity, the issue undoubtedly has significant political strengths. However, from the viewpoint of research on environmental policies, the role of scientific knowledge in decision making should be recognized as an open empirical question depending on the concrete contexts of the decision-making process. Further, it is concluded that the concepts relating to global environment are objects of a continuous localization. Thus, any moral-technocratic solutions emphasizing simply universal interests as the basis for global biodiversity management must be met with caution. In future research there is a need for concrete case studies in order to clarify the local conditions and opportunities of biodiversity policies.