Environmental factors influencing bird species diversity in Kenya

Sustainable resource management requires understanding the factors that increase or decrease species richness. Regional species richness patterns may be predicted by analysing patterns of variation in the environment. A number of studies have shown that bird species richness at a regional scale is influenced by climatic variables. We examined environmental correlates of bird species richness at a quarter degree square scale (55 × 55 km). Mean annual potential evapotranspiration accounts for 46% of the observed variation in species richness, while mean annual temperature and range annual potential evapotranspiration are significantly correlated with species richness and together account for a further 5% of the observed variation. The results are consistent with the hypothesis that environmentally available energy limits regional species richness.     

Water bird guilds and their feeding connections in the Bodrogzug, Hungary

Thalli of the intertidal Phaeophyte Fucus spiralis L. and the subtidal Chlorophyte Ulva olivascens Dangeard were exposed to artificial UV-A, UV-B and photosynthetically active radiation (PAR) by combination of PAR + UV-A + UV-B (PAB), PAR + UV-A (PA) and PAR (P) treatments. UV-A enhanced photosynthesis and stimulated carbonic anhydrase (CA) and nitrate reductase (NR) in F. spiralis whilst PAR only had an inhibitory effect in this species. U. olivascens suffered chronic photoinhibition in all the treatments as evidenced by reduced maxima photosynthesis (P_max) and photosynthetic efficiency (α). Non stimulatory effect was observed upon CA and NR in this species. Our results showed that artificial UV radiation triggered opposite responses in both species. We suggest that differences shown by both species might be related to their location in the rocky shore and their ability to sense UV. We propose that the ratio UV:PAR acts as an environmental signal involved in the control of photosynthesis as shown by pronounced inhibition in samples exposed to only PAR. We also suggest that UV-regulated photosynthesis would be related to carbon (C) and nitrogen (N) cycles, regulating feedback processes that control C and N assimilation.     

Bird foraging height predicts bird species response to woody vegetation change

Accurate a priori predictions of the sensitivity of species to vegetation management depend on an understanding of mechanisms underlying species response. To date information on where birds forage in the vegetation strata has been used to predict bird species response to vegetation change caused by livestock grazing. Profiting from this link between vegetation structural diversity and bird diversity, we test whether this variable, bird foraging height, can be used to predict the impact of a different type of habitat alteration; vegetation encroachment. Increases in vegetation density, called ‘encroachment’ or ‘thickening’, throughout savanna landscapes are considered a serious management issue for pastoral activities and a potential threat to biodiversity. We developed woody-vegetation-change models to predict the effect of vegetation encroachment on bird species through an understanding of where birds forage in intact vegetation communities. We compare model predictions with bird abundance data collected from 60 field sites representing a single woodland vegetation type, but with a gradient of woody vegetation density caused by clearing, thinning and natural climatic perturbation. Our model successfully predicted for the majority (80%) of birds considered, whether a species was likely to increase, decrease or remain unaffected by increases in woody vegetation density. We find that the majority of species respond positively to vegetation encroachment. Our approach avoids problems of post hoc data interpretation and tests a specific mechanism underlying bird species response to habitat alteration, bird foraging height. Simple predictive models such as these will assist land managers make informed decisions about management actions and consequences, particularly in cases where decisions need to be made urgently and preclude the collection and analysis of primary ecological data sets.     

Invasive species and land bird diversity on remote South Atlantic islands

Invasive species pose significant threats to biodiversity, especially on islands. They cause extinctions and population declines, yet little is known about their consequences on the emergent, metacommunity-level patterns of native species in island assemblages. We investigated differences in species–area relationships, nestedness, and occupancy of 9 species of native land birds between island assemblages with and without invasive Norway rats (Rattus norvegicus) in the Falkland Archipelago. We found that species–area curves, nestedness, and individual species’ occurrences differed between island assemblages with and without rats. Rat-free islands had, on average, 2.1 more land bird species than rat-infested islands of similar size. Passerine bird communities on islands with and without rats were significantly nested, but nestedness was significantly higher on rat-free islands than on rat-infested islands. The presence of rats was associated with differences in the incidence of many, but not all bird species. On rat free islands the occurrence of all species increased with island area. The occurrence of most, albeit not all, bird species was lower on islands with than on islands without rats. Two species of conservation concern, Troglodytes aedon cobbi and Cinclodes antarcticus, were abundant on rat-free islands, but absent or found at very low frequencies on islands with rats. The occurrence of three species was not associated with the presence of rats. The patterns presented here can be used to evaluate the consequences of ongoing rat eradications for passerine diversity, distribution, and abundance.     

Tree species diversity of tropical forest vegetation in Xishuangbanna, SW China

Tree species diversity of four tropical forest vegetation types was investigated in Xishuangbanna, southwestern China. These are: tropical seasonal rain forest, tropical montane rain forest, evergreen broad-leaved forest and monsoon forest over limestone. A total of 17 samples were taken and four species diversity indices were calculated: Shannon-Wiener's H, the complement of Simpson's index, d, Fisher's and evenness index E. The results reveal the long-tailed rank/abundance diagrams of these forests. However, this feature is greatly reduced in the samples of monsoon forest over limestone. Tropical seasonal rain forest shows the highest tree species diversity of all four vegetation types. Owing to the variation of microenvironment, diversity values within the same vegetation type vary between the samples from different patches. The tree species diversity of single-dominant rain forest is not significantly lower than that of mixed rain forest, because the dominant species of some single-dominant rain forests are principally in the emergent layer. This is composed of sparse and huge trees of one species and, consequently, creates a unique canopy architecture and more heterogeneous microenvironments for the more diversified species composition under the emergent layer. The occurrence of tree species with small population sizes, particularly of species represented by only one individual, is highly correlated with the tree species diversity of the local forest vegetation. They are crucial elements in the richness of local biodiversity.     

Understorey bird species diversity and abundance in three forest types of Semuliki National Park,Uganda

Sande, E. 2000. Understorey bird species diversity and abundance in three forest types of Semuliki National Park, Uganda. Ostrich 71 (1 & 2): 64–68.

Semuliki National Park is a rich lowland forest in terms of biodiversity. The bird species list currently stands at 428, of which 31 species occur nowhere else in East Africa. Although the park was severely encroached for agricultural activities, all the encroachers were evicted and many species of birds still survive. A total of 61 species with 1270 individuals were trapped from all the forest types. There was no significant difference in the species diversity between the swamp, mixed and Cynometra forest types. The Little Greenbul, Yellow-whiskered Greenbul, Slender-billed Greenbul, and Olive Sunbird were significantly more abundant in the mixed forest than in the swamp forest while the arboreal insectivore frugivores, terrestrial insectivores and sallying insectivores were significantly more abundant in the Cynometra than in the swamp forest type.     

广西阳朔岩溶植被演替过程种群变化及物种多样性

采用时空替代法研究广西阳朔岩溶植被在演替过程中的种群变化和物种多样性。研究表明,随着演替的进展,耐荫种群增加,乔木种群增加,优势种的更替呈现出一定的连续性,后一演替阶段的优势种往往已经隐含在前一演替阶段中;物种丰富度随演替进展表现出草丛<落叶阔叶林<灌丛<常绿落叶阔叶混交林的趋势;灌木层的物种丰富度在各演替阶段中均是最高的;在各演替阶段中,落叶阔叶林阶段的群落均匀度均表现为最大。     

Seasonal changes in bird species diversity at the interface between forest and reed-bed

Habitat edges are landscape structures that have a major influence on animal communities. Bird communities' response to habitat edges is influenced by the season and habitat characteristics but it is still poorly understood how communities respond to structural complex (i.e. natural) edges. Inter-seasonal changes in bird species diversity were quantified at a homogeneous, sharp interface between two habitats that host distinct and well-represented bird communities: a mature broad-leaved forest and a compact reed-bed area. Resident species diversity was found higher during winter, both in terms of species richness and evenness. The presence of the reed-bed nesting migrants during the summer season did not notably modify the seasonally reversed diversity pattern; the overall evenness was higher during the winter season while the overall species richness did not differ between the two seasons. Thus, contrary to the expected regional seasonal diversity pattern, the forest – reed-bed interface is, in winter, a local bird diversity hotspot. The possible causes and implications for conservation of this phenomenon are discussed.     

Defining species guilds in the Central Hardwood Forest,USA

Tree regeneration outcomes are challenging to generalize and difficult to predict. Many tree species can establish new propagules in a variety of post-disturbance environments and many different reproductive mechanisms may be used. In order to develop conceptual models that accurately reflect reproductive potential, we need a better understanding of the similarities in regeneration ecology among species. We used information from the forest ecology literature to evaluate the reproductive attributes of sixty-two tree species in the central hardwood region of the eastern United States. Each species was classified categorically for features such as flowering, seed production and dispersal, seed dormancy, germination requirements, seedling characteristics, and vegetative reproduction. Cluster analysis (Jaccard's similarity coefficient, complete linkage method) and ordination (homogeneity analysis) were used to separate nine groups (guilds) of species that had similar reproductive attributes. Individual attributes that had high variance in the first and second dimensions included: seed banking, seed dispersal, seedling shade tolerance, and seedbed requirements. Members of each guild had similar levels of reproductive specialization and guilds were either pioneer-like, opportunistic, or persistent. Pioneer guilds included: short-lived or fugitive species that colonize sites rapidly and are too shade intolerant to replace themselves; shade-tolerant species that colonize frequently disturbed sites; and stress-tolerant pioneers that survive on dry or nutrient-poor sites. Opportunistic guilds contained species that are remarkably versatile in their reproductive effort. The most flexible opportunists can colonize new sites, maintain seed in a seed bank, sprout from existing stems and persist as a seedling or sapling bank. Persistent guilds contain species that develop and maintain advance regeneration. These include: species with moderate understory tolerance that regenerate via cycles of dieback and resprouting; and more tolerant species that maintain seedling or sapling banks. Our regeneration guilds may provide a useful approach for more realistically representing large and diverse sets of tree species in forest ecosystem models.     

Climate, niche conservatism, and the global bird diversity gradient

We tested the proposition that there are more species in the tropics because basal clades adapted to warm paleoclimates have been lost in regions now experiencing cool climates. Molecular phylogenies were used to classify species as "basal" and "derived" based on their family, and their richness patterns were contrasted. Path models also evaluated environmental predictors of richness patterns. As predicted, basal clades are more diverse in the lowland tropics, whereas derived clades are more diverse in the extratropics and high-altitude tropics. Seventy-four percent of the variation in bird richness was explained by environmental variables, but models differed for basal and derived groups. The overall gradient is described by the spatial pattern of basal clades, although there are differences in the Old and New Worlds. We conclude that in ecological time, the global richness gradient reflects birds' responses to climatic gradients, partially operating via plants. Over evolutionary time, the gradient primarily reflects the extirpation of species in older clades from parts of the world that have become cooler in the present. A strong secondary effect arises from dispersal of clades from centers of origin and subsequent radiations. Overall, the diversity gradient is well explained by niche conservatism and the "time-for-speciation" hypothesis.     

Determinants of bird species richness: role of climate and vegetation structure at a regional scale

We examined the respective roles of climate and vegetation structure on geographical variation in bird species richness. The Province of Buenos Aires (central-eastern Argentina) was divided into 146 squares of 50 km on a side. For each square we evaluated the number of bird species, the value of thirteen climatic variables, and the value of a vegetation strata index. The climatic matrix was analyzed by Principal Component Analysis (PCA), and the first factors resulting from PCA were considered as multifactorial climatic gradients. Simple and Partial Correlation Analysis among bird species richness, vegetation strata, and the first two factors derived from PCA (65% of total variation) indicated that bird richness distribution was determined by the availability of vegetation strata, associated with different vegetation types that, at the same time, were influenced by the climatic conditions summarized in the first climatic factor (a gradient of precipitation, relative humidity, annual termical amplitude, and frost occurrence). This relationships reflect the complexity of factors that can act directly as well as indirectly on the geographical patterns in species richness. Also, we evaluated the importance of study scale comparing our results with previous studies at macrogeographic and local scales, found out that the vegetation structure was the principal determinant of bird species richness at this three geographical scales.     

Breeding bird species richness in Spain: assessing diversity hypothesis at various scales

The variation of passerine species richness in Spain was studied at various spatial scales. Presence-absence data was resampled to construct three species richness maps in lattices of 10×10, 30×30, and 50×50 km UTM cells. The importance of habitat, species-energy, climatic variability, disturbance, history and geometric constraints hypotheses was assessed using geographical data. Stochastic, range-based models were used to simulate neutral colonization events from Europe or from Africa. The importance of small scale processes remained after the inclusion of environmental covariates, indicating a possible role of ecological interactions that was represented in the models by a conditional spatial autoregressive term. Historical effects and energy related measures explained most of the variation in regional species richness. Local and regional habitat structure measures explained the pattern only after large scale trends were considered. The differences when species richness was analyzed at each scale reveal the importance of spatial issues in diversity studies. The possible role of post glacial migration in shaping the observed patterns, and implications for conservation are discussed.     

Objective recognition of guilds: testing for statistically significant species clusters

Summary Presently, no standard protocol for objective guild recognition is consistently used by ecologists. Apart from intuitive designations of guild membership, four statistically-based protocols are currently available: those of Colwell (1977); Holmes (1979); Lawlor (1980); and Adams (1985). The first is based on nearest-neighbor variance in overlap, the second on multivariate statistics, the third on clustering techniques, and the fourth on psychometric analysis. We propose a fifth approach, first developed by Strauss (1982) for purposes other than guild recognition. We advocate the use of bootstrap procedures to resample any given empirical matrix of consumers by resources, within constraints set by either of four different randomization algorithms. Subsequently, pseudovalues of similarity in resource use between the consumers are computed and their frequency distribution is displayed in a histogram. The overlap pseudovalue that exceeds percentile 95 may be considered statistically significant and chosen as the cutoff point that identifies significant species clusters (guilds) in the original (empirical) similarity matrix. We exemplify use of this approach with the food-niche matrix obtained for a predatory assemblage in California, and discuss its implications for the general analysis of guild structure.     

On the Shannon-Weaver index of diversity, in relation to the distribution of species in bird censuses

The “diversity” of a statistical sample is studied in relation to some simple ideal distributions of species within the sample. A correlation found by Tramer (1969) between the diversity of bird censuses and the number S of species is shown to agree (a) fairly well with the distribution of species described by a Dirichlet series, and (b) remarkably well with MacArthur's “broken-stick” distribution.     

The long alpha-helix of SecA is important for the ATPase coupling of translocation

SecA contains two ATPase folds (NBF1 and NBF2) and other interaction/regulatory domains, all of which are connected by a long helical scaffold domain (HSD) running along the molecule. Here we identified a functionally important and spatially adjacent pair of SecA residues, Arg-642 on HSD and Glu-400 on NBF1. A charge-reversing substitution at either position as well as disulfide tethering of these positions inactivated the translocation activity. Interestingly, however, the translocation-inactive SecA variants fully retained the ability to up-regulate the ATPase in response to a preprotein and the SecYEG translocon. The translocation defect was suppressible by second site alterations at the hinge-forming boundary of NBF2 and HSD. Based on these results, we propose that the motor function of SecA is realized by ligand-activated ATPase engine and its HSD-mediated conversion into the mechanical work of preprotein translocation.     

Main vegetation types and plant species diversity along an altitudinal gradient of Al Baha region,Saudi Arabia

Plant species composition patterns and vegetation types were investigated along Elevational Gradients in Al Baha region, Saudi Arabia. Sandy plain, wadis, drainage lines, rocky outcrops, hills and fallow lands occur over a wide geographic range encompassing variation in plant species and communities among these different ecological sites. To provide a quantitatively based classification of the vegetation we used Multi Variant Statistical Package (MVSP) software, followed by the re-arrangement of a matrix of the similar plant species in rows and similar sample sites in columns. Plant density and environmental variables were measured and recorded in each quadrat. Two-way indicator species analysis and Canonical Correspondence Analysis (CCA) were used to analyze the relationships between vegetation and environmental variables, while Arc Map was used to analyze the pattern of plant species density. A total of 59 sample plots (25 × 25 m), stratified, randomly-placed relevés were collected in Al Baha region, along a cross section running from south-west to north-west. About 190 plant species belonging to 59 families were recognized. This study showed that these plant species formed 15 vegetation types that primarily correspond mainly to different combinations of elevation, and topography. The study concluded that this research has provided the first quantitative and systematic survey of the vegetation in Al Baha region.     

Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity

Almost half a century after Whittaker (Ecol Monogr 30:279–338, 1960) proposed his influential diversity concept, it is time for a critical reappraisal. Although the terms alpha, beta and gamma diversity introduced by Whittaker have become general textbook knowledge, the concept suffers from several drawbacks. First, alpha and gamma diversity share the same characteristics and are differentiated only by the scale at which they are applied. However, as scale is relative––depending on the organism(s) or ecosystems investigated––this is not a meaningful ecological criterion. Alpha and gamma diversity can instead be grouped together under the term “inventory diversity.” Out of the three levels proposed by Whittaker, beta diversity is the one which receives the most contradictory comments regarding its usefulness (“key concept” vs. “abstruse concept”). Obviously beta diversity means different things to different people. Apart from the large variety of methods used to investigate it, the main reason for this may be different underlying data characteristics. A literature review reveals that the multitude of measures used to assess beta diversity can be sorted into two conceptually different groups. The first group directly takes species distinction into account and compares the similarity of sites (similarity indices, slope of the distance decay relationship, length of the ordination axis, and sum of squares of a species matrix). The second group relates species richness (or other summary diversity measures) of two (or more) different scales to each other (additive and multiplicative partitioning). Due to that important distinction, we suggest that beta diversity should be split into two levels, “differentiation diversity” (first group) and “proportional diversity” (second group). Thus, we propose to use the terms “inventory diversity” for within-sample diversity, “differentiation diversity” for compositional similarity between samples, and “proportional diversity” for the comparison of inventory diversity across spatial and temporal scales. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.