Dynamic studies of proton diffusion in mesoscopic heterogeneous matrix: II. The interbilayer space between phospholipid membranes

The thin water layer, as found in chloroplast or mitochondria, is confined between low dielectric amphypathic surfaces a few nm apart.

The physical properties of this mesoscopic space, and how its dimensions affect the rate of chemical reactions proceeding in it, is the subject for this study.

The method selected for this purpose is time resolved fluorometry which can monitor the reversible dissociation of a proton from excited molecule of pyranine (8 hydroxy pyrene 1,3,6 tri sulfonate) trapped in thin water layers of a multilamellar vesicle made of neutral or slightly charged phospholipids.

The results were analyzed by a computer program of N. Agmon (Pines, E., D. Huppert, and N. Agmon. 1988. J. Am. Chem. Soc. 88:5620-5630) that simulates the diffusion of a proton, subjected to electrostatic attraction, in a thin water layer enclosed between low affinity, proton binding surfaces. The analysis determines the diffusion coefficient of the proton, the effective dielectric constant of the water and the water accessibility of the phosphomoieties of the lipids.

These parameters were measured for various lipids [egg-phosphatidylcholine (egg PC), dipalmitoyl phosphatidylcholine (DPPC), cholesterol + DPPC (1:1) and egg PC plus phosphatidyl serine (9:1)] and under varying osmotic pressure which reduces the width of the water layer down to ~10 ~ across.

We found that: (a) The effective dielectric constant of the aqueous layer, depending on the lipid composition, is ~40. (b) The diffusion coefficient of the proton in the thin layer (30-10 ~ across) is that measured in bulk water D = 9.3 10^-5 cm²/s, indicating that the water retains its normal liquid state even on contact with the membrane. (c) The reactivity of the phosphomoiety, quantitated by rate of its reaction with proton, diminishes under lateral pressure which reduces the surface area per lipid.

We find no evidence for abnormal dynamics of proton transfer at the lipid water interface which, by any mechanism, accelerates its diffusion.

     

Prototropic tautomerism of imidazolone in aqueous solution: a density functional approach using the combined discrete/self-consistent reaction field (SCRF) models

A systematic investigation of the proton transfer in the keto-amino/enol tautomerization of imidazolone was undertaken. Calculations in aqueous solution were performed using both combined discrete/self-consistent reaction field (SCRF) and SCRF methods. Complexes containing one to three water molecules around the hydrophilic site of imidazolone were used for the combined discrete/SCRF calculations. The DFT results predict that the barrier height for non-water-assisted intramolecular proton transfer is very high (214.8 kJmol^–1). Hydrogen bonding between imidazolone and the water molecule(s) will dramatically lower the barrier by a concerted multiple proton transfer mechanism. The proton transfer process through a eight-member ring formed by imidazolone and two water molecules is found to be more efficient and the calculated barrier height is ca. 61 kJmol^–1.Figure DFT calculations in aqueous solution predict the H-bonding between imidazolone(IZ) and the water molecule(s) will dramatically lower the tautomeric barrier by a concerted multiple proton transfer mechanism, in which an eight-member ring structure formed by IZ and 2H₂O is found to be more efficient and the barrier is 60.8 kJ mol^–1, much less than 214.8 kJ mol^–1 in the non-water-assisted mechanism.     

Kinetics of Inhibition of Green Crab (Scylla serrata) Alkaline Phosphatase by L-Cysteine

The inhibition of alkaline phosphatase from green crab (Scylla serrata) by L-cysteine has been studied. The results show that L-cysteine gives a mixed-type inhibition. The progress-of-substrate-reaction method previously described by Tsou [(1988), Adv. Enzymol. Related Areas Mol. Biol. 61, 391–436] was used to study the inactivation kinetics of the enzyme by L-cysteine. The microscopic rate constants were determined for reaction of the inhibitor with the free enzyme and the enzyme–substrate complex (ES) The results show that inactivation of the enzyme by L-cysteine is a slow, reversible reaction. Comparison of the inactivation rate constants of free enzyme and ES suggests that the presence of the substrate offers marked protection of this enzyme against inactivation by L-cysteine.     

Kinetics of Thermal Inactivation of Lactate Dehydrogenase from Rabbit Muscle

The kinetics of thermal inactivation of rabbit muscle lactate dehydrogenase at different temperatures has been studied using the kinetic method for the substrate reaction during irreversible inhibition of enzyme activity previously described by Tsou [Adv. Enzymol. Relat. Areas Mol. Biol. (1988), 61, 381–436]. The results show that thermal inactivation of the enzyme is an irreversible reaction. Microscopic rate constants were determined for thermal inactivation of the free enzyme and the enzyme–substrate complex. The inactivation rate constant of the free enzyme is much larger than the rate constant of the enzyme–substrate complex. The results suggest that the presence of the substrate has a certain protective effect against thermal inactivation of the enzyme.     

Obtaining functional membrane vesicles from Leuconostoc oenos to study l-malate transport mechanisms

Membrane vesicles from the malolactic bacterium Leuconostoc oenos were obtained by a modified version of the procedure of Kaback [Methods Enzymol 22:99–120 (1971)]. Protoplasts were produced at frequencies greater than 95% by a method entailing mutanolysis digestion and osmotic shock. Glycerol or polyethyleneglycol 600 was required as an osmotic stabilizer while the use of sucrose prevented closed vesicle formation during osmotic shock. The membrane vesicles retained their functional properties and accumulated l-malic acid in response to an ATPase-induced proton gradient across the membrane of ATP-loaded vesicles. l-Malate uptake was strongly inhibited by dicyclohexylcarbodiimide, a specific inhibitor of membrane-bound ATPase. These data support the possibility of a pH-dependent transport of l-malate. Vesicles not loaded with ATP were slightly permeable to malic acid with an initial uptake rate (0.5 nmol·l^–1·s^–1) similar to the diffusion rate obtained previously in a L. oenos malate-transport-deficient strain. These results confirm two simultaneous uptake mechanisms in L. oenos, a permease-mediated transport and a passive diffusion for the anionic and the undissociated forms of l-malic acid respectively.     

Paleolimnological reflections of fiber-plant retting in the sediment of a small clear-water lake

Likolampi is a small groundwater kettle-hole lake in Ilomantsi, Eastern Finland. At 11 m water depth the uppermost 51 cm of sediment contains about 390 varves. A thin layer of chrysophyte statospores is the main structural unit in these; in some varves it is followed by a layer of cf. Drepanocladus fluitans moss spores. Below the laminated sequence, two layers of moss detritus (110–87 cm, 81–51 cm) alternate with greyish brown fine detritus. Pollen analysis reveals that the start of the deposition of varved sediment coincides with the beginning of intensive fiber plant retting with large quantities of Cannabis/Humulus -type pollen and even regular occurrence of the insect-pollinated Linum usitatissimum. The cf. Drepanocladus spores are almost absent during the retting period (c. 1590–1900 by the varves), but very common before and after it. Drepanocladus fluitans is capable of assimilating dissolved CO₂ in water, so it thrives at low pH and is typical for oligotrophic clear-water lakes. We conclude that the stratigraphy of Drepanocladus fragments and spores is a true negative indicator of cultural influence in Likolampi.     

Effect of soil compaction on root growth and uptake of phosphorus

Summary Zea mays L. andLolium rigidum Gaud. were grown for 18 and 33 days respectively in pots containing three layers of soil each weighing 1 kg. The top and bottom layers were 100 mm deep and they had a bulk density of 1200 kg m^–3, while the central layer of soil was compacted to one of 12 bulk densities between 1200 and 1750 kg m^–3. The soil was labelled with³²P and³³P so that the contribution of the different layers of soil to the phosphorus content of the plant tops could be determined. Soil water potential was maintained between –20 and –100 kPa.Total dry weight of the plant tops and total root length were slightly affected by compaction of the soil, but root distribution was greatly altered. Compaction decreased root length in the compacted soil but increased root length in the overlying soil. Where bulk density was 1550 kg m^–3, root length in the compacted soil was about 0.5 of the maximum. At that density, the penetrometer resistance of the soil was 1.25 and 5.0 MPa and air porosity was 0.05 and 0.14 at water potentials of –20 and –100 kPa respectively, and daytime oxygen concentrations in the soil atmosphere at time of harvest were about 0.1 m³m^–3. Roots failed to grow completely through the compacted layer of soil at bulk densities 1550 kg m^–3. No differences were detected in the abilities of the two species to penetrate compacted soil.Ryegrass absorbed about twice as much phosphorus from uncompacted soil per unit length of root as did maize. Uptake of phosphorus from each layer of soil was related to the length of root in that layer, but differences in uptake between layers existed. Phosphorus uptake per unit length of root was higher from compacted than from uncompacted soil, particularly in the case of ryegrass at bulk densities of 1300–1500 kg m^–3.     

ATP formation onset lag and post-illumination phosphorylation initiated with single-turnover flashes. II. Two modes of post-illumination phosphorylation driven by either delocalized or localized proton gradient coupling

Two modes of chloroplast membrane post-illumination phosphorylation were detected, using the luciferin-luciferase ATP assay, one of which was not influenced by added permeable buffer (pyridine). That finding provides a powerful new tool for studying proton-membrane interactions during energy coupling. When ADP and P_i were added to the thylakoid suspension after a train of flashes [similar to the traditional post-illumination phosphorylation protocol (termed PIP^– here)], the post-illumination ATP yield was influenced by pyridine as expected, in a manner consistent with the ATP formation, in part, being driven by protons present in the bulk inner aqueous phase, i.e., through a delocalized protonmotive force. However, when ADP and P_i were present during the flash train (referred to as PIP⁺), and ATP formation occurred during the flash train, the post-illumination ATP yield was unaffected by the presence of pyridine, consistent with the hypothesis that localized proton gradients were driving ATP formation. To test this hypothesis further, the pH and flash number dependence of the PIP^– and PIP⁺ ATP yields were measured, the results being consistent with the above hypothesis of dual compartment origins of protons driving post-illumination ATP formation.Measuring proton accumulation during the attainment of the threshold energization level when no component was allowed to form (+ valinomycin, K⁺), and testing for pyridine effects on the proton uptake, reveals that the onset of ATP formation requires the accumulation of about 60 nmol H⁺ (mg Chl)^–1. Between that level and about 110–150 nmol H⁺ (mg Chl)^–1, the accumulation appears to be absorbed by localized-domain membrane buffering groups, the protons of which do not equilibrate readily with the inner aqueous (lumen) phase. Post-illumination phosphorylation driven by the dissipation of the domain protons was not affected by pyridine (present in the lumen), even though the effective pH in the domains must have been well into the buffering range of the pyridine. That finding provides additional insight into the localized domains, namely that protons can be absorbed by endogenous low pK buffering groups, and released at a low enough pH (5.7 when the external pH was 8, 4.7 at pH 7 external) to drive significant ATP formation when no further proton production occurs due to the redox turnovers. We propose that proton accumulation beyond the 110–150 nmol (mg Chl)^–1 level spills over into the lumen, interacting with additional, lumenal endogenous buffering groups and with pyridine, and subsequent efflux of those lumenal protons can also drive ATP formation. Such a dual-compartment thylakoid model for the accumulation of protons competent to drive ATP formation would require a gating mechanism to switch the proton flux from the localized pathway into the lumen, as discussed by R. A. Dilley, S. M. Theg, and W. A. Beard (1987)Annu. Rev. Plant Physiol. 38, 348–389, and recently suggested by R. D. Horner and E. N. Moudrianakis (1986)J. Biol. Chem. 261, 13408–13414. The model can explain conflicting data from past work showing either localized or delocalized gradient coupling patterns.     

The cell wall of Chlamydomonas reinhardtii gametes: Composition,structure and autolysin-mediated shedding and dissolution

The cell walls of Chlamydomonas gametes are multilayered structures supported on frameworks of polypeptides extending from the plasma membrane. The wall-polypeptide catalogue reported by Monk et al. (1983, Planta 158, 517–533) and extended by U.W. Goodenough et al. (1986, J. Cell Biol. 103, 405–417) was re-evaluated by comparative analysis of mechanically isolated cell walls purified from several strains. The extracellular locus of wall polypeptides was verified by in vivo iodogen-catalysed iodination and by autolysin-mediated elimination of the bulk of these polypeptides from the cell surface. Three (w15, w16, w17) and possibly four (w14) polypeptides were located to the most exterior aspect of the wall because of their susceptibility to Enzymobeadcatalysed iodination and their retention by a cell-wall-less mutant. The composition of shed walls stabilised with ethylenediaminetetraacetic acid during natural mating and kinetic analysis of the dissolution of walls purified from a bald-2 mutant demonstrated the rapid and specific destruction of polypeptide w3. Differential solubilisation of wall polypeptides occurred after loss of w3. Wall dissolution, characterised by the generation of fishbone structures from the W2 layer, gave as many as four additional polypeptides. Charged detergents and sodium perchlorate extracted a comparable range of polypeptides at room temperature from mechanically isolated walls, i.e. components of the W4–W6 layers, hot sodium dodecyl sulphate solubilised framework polypeptides, while reducing agent was required to solubilise the W2 layer. A model of wall structure is presented.Abbreviations DTE dithioerythritol - EDTA ethylenediaminetetraacetic acid - M_r relative molecular mass - SDS-PAGE sodium dodecyl sulphate-polyacrylamide gel electrophoresis - Tris 2-amino-2-(hydroxymethyl)-1,3-propanediol     

Vertical distribution of benthic nematodes in an oligotrophic lake: seasonality, species and age segregation

The vertical distribution of nematodes up to 20 cm sediment depth was studied over a one-year period in the alpine, oligotrophic lake Königssee. Ten water depths were examined, four of which correspond to the littoral (1 m, 2 m, 5 m, 10 m), three to the littoriprofundal (15 m, 20 m, 30 m) and three to the profundal (60 m, 120 m, 190 m). The sediment was devided into four layers (0–2 cm, 2–5 cm, 5–10 cm and 10–20 cm). (1) The highest proportion of nematodes was found in the top layer. Out of 45 263 nematodes, 89% were found in the first 5 cm of the sediment and only 1 % deeper than 10 cm. (2) The proportion of nematodes in the top layer increased along with water depth. Water depth was a better predictor of percentage of nematodes in the top layer than particle size or content of organic carbon in the sediment. (3) There were considerable differences among species in their vertical distribution in the sediment. (4) There was a significant trend for juveniles to occupy more superficial layers than adults across various species. (5) There are time related vertical preferences among adults and juveniles of several nematode species across the year, suggesting vertical migration in the sediment (e.g. Aphanolaimus aquaticus Daday, Eumonhystera longicaudatula Gerlach & Riemann, Tobrilus gracilis Bastian, Monhystera paludicola de Man, Ethmolaimus pratensis de Man and Ironus tenuicaudatus de Man). The factors determining the vertical variation in nematode abundance in freshwater systems across space and time are still unknown.     

Six new species ofGagea (Liliaceae) from the Flora Iranica area

Six new species are described:Gagea anonyma, G. Staintonii, G. siphonantha, G. Grey-Wilsonii, G. chloroneura. All belong to subgen.Platyspermum (Boiss.)Miscz. Florae Iranicae praecursores63–68. — Praecursores praecurrentes: Pl. Syst. Evol.151, 281–293 (1986).     

Electrostatic interactions in gramicidin channels

A model based on the solution of the electrostatic potential for a geometry of three dielectric regions associated with a gramicidin A channel (GA) is presented. The model includes a cylindrical dielectric layer to represent the peptide backbone and dipole rings to account for dipolar side chains. Image potential and dipolar contributions for different orientations and positions along the channel are analyzed. The conductance of GA and two analogues obtained by substituting the amino acid at position 1 are studied. The numerical simulation reproduces experimental results (Barrett et al. 1986, Biophys J 49, 673–686) and supports the idea that electrostatic dipole-ion interactions are of primary importance in gramicidin channel function. Correspondence to: G. Martinez     

Feeding behaviour and migrations in a natural population of the copepod Acartia tonsa

This paper deals with the variations on feeding activities and diel migrations of Acartia tonsa Dana, the dominant copepod species in Berre lagoon (west Mediterranean French coasts).A 27 hour in situ study was carried out during June 1989, at a station located in the south west of the lagoon. Vertical profiles of salinity, temperature and dissolved oxygen taken each 12 hours showed a stratification of the water column in two distinct layers: (1) a superficial layer with higher temperature, moderate salinity, and high oxygen concentrations; (2) a colder, more saline and almost anoxic deep layer. In situ chlorophyll a measurements were made at –1, –3 and –5 m; concentrations were relatively homogeneous through the water column during the whole sampling period.Zooplankton samples were collected every 3 hours with a 200 µm mesh net, in three strata (0–2 m, 2–4 m, 4–6 m). A complete dominance of A. tonsa was observed in the zooplankton community. Our results point out clearly a nocturnal migration, with individuals concentrating in both superficial layers; thus an unimodal migratory pattern can be inferred. Gut flourescence measured following the Mackas & Bohrer technique (1976), showed higher values during night time, and values for females were the highest with wider day—night variations. Similar results were found in laboratory experiments with copepods fed with a culture of Dunaliella tertiolecta.Gut evacuation rate was measured in two laboratory experiments either mixing or separating males and females. Evacuation rate was 17.92 and 27.25 min for males and females respectively.Phytoplankton daily ration for A. tonsa calculated by gut flourescence and gut evacuation rate was particularly low, for it represents only 10% of the individual carbon weight.Moreover, grazing impact on phytoplankton is very restricted, it represents less than 1% of the daily phytoplankton stock.     

Homologous IRCM-Serine Protease 1 from pituitary,heart atrium and ventricle: A common pro-hormone maturation enzyme?

IRCM-Serine Protease 1 (IRCM-SP1) has recently been isolated and characterized from porcine pituitary anterior and neurointermediate lobes (Cromlishet al., 1986a,J. Biol. Chem. 261:10850–10858; Cromlishet al., 1986b,J. Biol. Chem. 261:10859–10870). This pituitary serine protease was shown to selectively cleave human proopiomelanocortin (POMC)-derived peptides at both pairs of basic residues and C-terminal to specific Arg residues, all known to be cleavedin vivo. Here, a similar enzyme was isolated from rat heart atria and ventricles. Rat IRCM-SP1 was shown to be highly specific for the same cleavage sites in POMC, as the porcine pituitary homologue. Furthermore, the rat and the porcine enzymes cleave rat pro-Atrial Natriuretic Factor (pro-ANF 1–126) to yield ANF 103–126, 102–126 and 99–126 in that order of preference. This suggests thatin vitro the cleavage sites preferred in pro-ANF resemble those found in brain and hypothalamus. The enzyme is nine times more abundant in atria versus ventricles/mg protein. It is concluded that IRCM-SP1, could well represent a common pro-hormone maturation enzyme for POMC and Pro-ANF and possibly many other pro-hormones.     

The ultrastructure of the blood capillaries in the mouse thyroid gland

Summary In the mouse thyroid gland the endothelium lining the blood capillaries is separated from the epithelial cells by a periendothelial space composed of three layers. Two of these are rather dense and localized close to the epithelium and endothelium, respectively. The third layer, interposed between the two dense layers, has a very low density. The dense layers, having each a thickness of 400–500 Å, show at high magnification in some places a lamellated structure. The middle layer varies in thickness and contains sometimes aggregates of a homogeneous material, circular bodies bordered by a membrane and, in single cases, fibrillar structures.The major part of the endothelial wall is very thin, only 200–600 Å. Within these thin parts discontinuities are observed, the endothelial cytoplasm being replaced by a more or less distinct membrane, about 50 Å thick. The dimension of the discontinuities is about 400 Å. The observations made are discussed.     

Automated multiple development method for determination of glycerol produced by wine yeasts

A rapid and efficient analytical method for the determination of glycerol in wines is described. This method utilizes high-performance thin layer chromatography (HPTLC) plates coupled with an automated multiple development system with an elution gradient based on acetonitrile–acetone–hexane on silica gel layers. The absence of clean-up procedures, sometimes only centrifugation, makes this method suitable also for the large-scale control of alcoholic beverages. In particular the capacity of different wine yeast species (Saccharomyces cerevisiae, Zygosaccharomyces bailii, Kloeckera apiculata and Saccharomycodes ludwigii) to produce glycerol was determined. Generally, the strains of S. cerevisiae produced elevated amounts of glycerol together with Z. bailii, whereas K. apiculata strains formed the lowest amounts of glycerol, exhibiting also a great strain variability.     

Electrically silent anion transport through bilayer lipid membrane induced by tributylin and triethyllead

Summary The method of the measurement of the nonelectrogenic fluxes of hydrogen (or hydroxyl) ions (J _H) based on the local proton gradients formation in the unstirred layers near a bilayer lipid membrane (BLM) is applied for recording the nonelectrogenic anion/OH^– exchange on BLM induced by tributyltin (TBT) and a novel carrier (Hager, A., Moser, I., & Berthold, W. 1987.Z. Naturforsch.,42C1116–1120), triethyllead (TEL). This method has been used previously for measuring the cation fluxes through BLM. TBT and TEL are shown to be equally efficient in the induction of Cl^–/OH^– exchange.J _H induced by TBT is constant at 4J _H decreases at pH<4 and pH>7. Both ionophores have a transport sequence: I^–> Br^–>Cl^–>F^–. The quatitative measurements reveal that TEL better discriminates these four anions than TBT. It is concluded that this method may prove helpful in a search and study of anion/OH^–-exchangers isolated from natural membranes.     

Enhancement of evaporation rates from thin layers of liquids exposed to air ions

A beta-ray gauge system was used to study evaporation rates and drying times of liquids exposed to relatively high fluxes of air ions of either polarity produced by a corona discharge. Evaporation rates from thin layers of water, ethyl alcohol, and carbon tetrachloride increased considerably when exposed to air ions, compared to untreated liquids under constant environmental conditions. Drying times of liquid layers exposed to air ions were shortened by a factor of at least two over liquids that had not been exposed to ions. The drying time of a liquid layer was found to increase with the decrease of ion fluxes at the liquid surface. Threshold values of 1.9×10¹¹ positive ions and 2.7×10¹¹ negative ions cm^–2 s^–1 were established below which no increase in the evaporation rates were observed for ethyl alcohol and carbon tetrachloride. The evaporation rate of water at these same ion fluxes was significantly higher than that of the control. The present experiments indicate that a stream of air ions could play a major role in the observed enhancement of evaporation rates.     

Time and concentration dependence of the dicyclohexylcarbodiimide inhibition of proton movements in the cytochromebc 1 complex from yeast mitochondria reconstituted into proteoliposomes

The cytochromebc ₁ complex was isolated from yeast mitochondria solubilized with the detergent dodecyl maltoside and reconstituted into proteoliposomes to measure electrogenic proton pumping. Optimal respiratory control ratios of 4.0, obtained after addition of the uncoupler CCCP, and H⁺/e ^– ratios of 1.6 were obtained when the proteoliposomes were prepared with egg yolk phosphatidylcholine supplemented with cardiolipin. Moreover, it was critical to remove excess dodecyl maltoside in the final concentrated preparation prior to reconstitution to prevent loss of enzymatic activity. The rate of electrogenic proton pumping, the respiratory control ratios, and the H⁺/e ^– ratios were decreased by incubation of the cytochromebc ₁ complex with dicyclohexylcarbodiimide (DCCD) in a time and concentration dependent manner. Maximum inhibitions were observed when 50 nmol DCCD per nmol of cytochromeb were incubated for 30 min at 12°C with the intact cytochromebc ₁ complex. Under these same conditions maximum labeling of cytochromeb with [¹⁴C] DCCD was reported in a previous study [Beattieet al. (1984).J. Biol. Chem. 259, 10562–10532] consistent with a role for cytochromeb in electrogenic proton movements.     

Kinetics of inhibition of alkaline phosphatase from green crab (Scylla serrata) by N-bromosuccinimide

The inactivation of alkaline phosphatase from green crab (Scylla serrata) by N-bromosuccinimide has been studied using the kinetic method of the substrate reaction during modification of enzyme activity previously described by Tsou [(1988),Adv. Enzymol. Related Areas Mol. Biol. 61, 381–436]. The results show that inactivation of the enzyme is a slow, reversible reaction. The microscopic rate constants for the reaction of the inactivator with free enzyme and the enzyme-substrate complex were determined. Comparison of these rate constants indicates that the presence of substrate offers marked protection of this enzyme against inactivation by N-bromosuccinimide. The above results suggest that the tryptophan residue is essential for activity and is situated at the active site of the enzyme.Abbreviations ALP alkaline phosphatase - PNPP p-nitrophenyl phosphate - NBS N-bromosuccinimide