High-resolution gas chromatographic profiles of volatile organic compounds produced by microorganisms at refrigerated temperatures.

Three different strains of bacteria isolated from spoiled, uncooked chicken were grown in pure culture on Trypticase soy agar supplemented with yeast extract. The volatile organic compounds produced by each culture were concentrated on a porous polymer precolumn and analyzed by high-resolution gas chromatographic mass spectrometry. Twenty different compounds were identified. Both qualitative and quantitative differences in the chromatographic profiles from each culture were found.     

Characterizations of six ethanolamine sphingophospholipids from Paramecium cells and cilia

Six ethanolamine sphingophospholipids from axenically cultured Paramecium tetraurelia were isolated from cells and purified ciliary fractions, and were characterized. The sphingolipids comprised 10.7% of whole cell and 32.5% of ciliary ethanolamine phospholipid fractions purified by ion exchange column chromatography. The individual sphingolipids were characterized by thin-layer chromatographic analyses of parent compounds and the polar head group and long chain base moieties, gas-liquid chromatography, and mass spectrometry of amide-linked fatty acids and long chain bases, and nuclear magnetic resonance of the compounds. Colorimetric assays of differential hydrolysis products and 31P nuclear magnetic resonance were used to determine the nature of phosphorus linkages. The sphingolipids were identified as N-acyl-trans-4-hydroxy-sphinganine-1- phosphonoethanolamine , N-acyl-trans-4-hydroxy-sphinganine-1-phosphoethanolamine, N-acyl-sphingenine-1- phosphonoethanolamine , N-acyl-sphingenine-1-phosphoethanolamine, N-acyl-sphinganine-1- phosphonoethanolamine and N-acyl-sphinganine-1-phosphoethanolamine. All six had greater than 90% saturated fatty acids. These sphingolipids were quantified by radioisotope methods and plate densitometry of thin-layer chromatograms. Changes in the relative amounts of each species were detected in cells grown in different culture media as well as in cells at different culture ages.     

Thymol derivatives from a root culture of Inula helenium

A root culture of Inula helenium L. was established from leaf explants of aseptic seedlings. An ethanol extract from the lyophilised roots was fractionated using different chromatographic techniques (CC, TLC). The main secondary metabolites found in the root culture were two thymol derivatives: 10-isobutyryloxy-8,9-epoxy-thymol isobutyrate (1) and 10-isobutyryloxy-6-methoxy-8,9-epoxy-thymol isobutyrate (2). The compounds were identified by spectral methods. Quantification of compound 1 in plant material was done by analytical RP-HPLC.     

The antimicrobial activity of Aspergillus fumigatus is enhanced by a pool of bacteria

In a screening program for new antibiotic producers, a strain of Aspergillus fumigatus was isolated from Brazilian soil samples. A pool of autoclaved bacteria was added to part of the fungus culture on the second day of fermentation to increase antibiotic production. The chloroform extract from the culture broth to which the pool of autoclaved bacteria was added showed an increase of 55%, 63% and more than 100% in activity against Staphylococcus aureus, Candida albicans and Micrococcus luteus, respectively. Also, the HPLC chromatographic profiles of the chloroform extracts from both culture conditions were different. Two active compounds were isolated from the broth of the culture grown in the presence of pooled bacteria and were identified as 3,4-dimethoxyphenol and 1,3,5-trimethoxybenzene.     

Proteomic profiling of secreted proteins from CHO cells using Surface-Enhanced Laser desorption ionization time-of-flight mass spectrometry

Chinese hamster ovary (CHO) cells are the most commonly used host cell line for the production of recombinant biopharmaceuticals. These biopharmaceuticals are typically secreted from CHO cells and purified from harvested cell culture media. The purpose of this study was to investigate changes in the secreted proteome of CHO cells over the various stages of the growth cycle using Surface Enhanced Laser desorption ionization time-of-flight mass spectrometry (SELDI-TOF MS). Conditioned media samples were collected each day over a 6 day growth period from CHO-K1 cells grown in low serum (0.5% FBS) conditions in monolayer culture. Samples were profiled on a number of ProteinChip arrays with different chromatographic surfaces. From this study, 24 proteins were found to be differentially regulated at different phases of the growth cycle in CHO-K1 cells, when profiled on two chromatographic surfaces, Q10 (anionic) and IMAC30 (metal affinity) ProteinChip arrays.     

A CHEMOTAXONOMIC STUDY OF LEMNACEAE

One hundred eighty-six clones of Lemnaceae, representing world-wide collections of 22 taxa, were grown in axenic cultures reproduced by clonal subcultures. Following morphological examinations under a range of culture conditions, a “key” clone was selected to represent each taxon. These key clones were completely representative of the qualitative flavonoid chemistry of the taxa as determined from a number of clones. With the exceptions of Spirodela polyrhiza and S. biperforala which produce identical flavonoids, the flavonoid associations of each species of Lemnaceae were unique in the family. Through paper chromatographic comparisons of purified compounds, plus visible and ultraviolet absorption spectroscopy of isolated individual flavonoids, a total of 47 different compounds was described. These substances included: glycosides of anthocyanidins (cyanidin and petunidin); glycosides of flavonols (kaempferol and quercetin); glycosides of flavones (apigenin and luteolin); and several glycoflavones (C-glycosyl-flavones). When grown under equivalent controlled conditions of culture, infraspecific variation in the qualitative production of these 47 flavonoids was detected in only one flavone glycoside of the species Lemna perpusilla. The reliability of the flavonoid patterns under various conditions of culture was investigated. Under 62 different regimes S. oligorhiza and S. polyrhiza showed only minor variations in their flavonoid glycosides. Studies of other taxa supported this generalization. Under controlled conditions, morphological intergradation obscured identification of many collections. Each could be conclusively identified by its flavonoid chemistry.     

Identification of volatile organic compounds produced by fluorescent pseudomonads on chicken breast muscle.

Four different fluorescent pseudomonads were isolated from spoiled, uncooked chicken breasts and were grown in pure culture on initially sterile chicken breast muscle at 2 to 6 degrees C for 14 days. The volatile compounds produced by each culture were concentrated on a porous polymer precolumn and separated and identified by high-resolution gas chromatography-mass spectrometry.     

Untersuchung von Bestandteilen der Zuckerrübenmelasse,die auf Aspergillus niger bei der Citronensäureproduktion toxisch wirken

Several fractions of ether extracts of beet molasses separated by chemical and chromatographic methods were found to be toxic for Aspergillus niger. Addition of these fractions to growth medium caused sinking of the mycelium in the culture broth and irregular growing of the test strains. Fermentation tests carried out on molasses media in the presence of the toxic fractions showed a different susceptibility depending on the used strain. From one fraction n-alkanes with 16 to 36 carbon atoms were isolated by thin-layer chromatography and identified using IR and GC methods. These compounds originated in molasses probably from chemical additives used in the sugar manufacture plant.     

The antimicrobial activity of Aspergillus fumigatus is enhanced by a pool of bacteria

In a screening program for new antibiotic producers, a strain of Aspergillus fumigatus was isolated from Brazilian soil samples. A pool of autoclaved bacteria was added to part of the fungus culture on the second day of fermentation to increase antibiotic production. The chloroform extract from the culture broth to which the pool of autoclaved bacteria was added showed an increase of 55%, 63% and more than 100% in activity against Staphylococcus aureus, Candida albicans and Micrococcus luteus, respectively. Also, the HPLC chromatographic profiles of the chloroform extracts from both culture conditions were different. Two active compounds were isolated from the broth of the culture grown in the presence of pooled bacteria and were identified as 3,4-dimethoxyphenol and 1,3,5-trimethoxybenzene.     

Some chromatographic characteristics of germination stimulants in plant-derived smoke extracts

Plant-derived smoke extracts stimulate the germination of many different seeds. the present report explains steps to determine some of the chemical characteristics of the compounds concerned. Grand Rapids lettuce seeds were used as a bioassay because smoke-derived extracts overcome their light-sensitivity. The active compounds were partitioned into ethyl acetate, separated by various TLC systems and fractionated by reverse phase HPLC. They are stable surviving a series of chromatographic steps and are very active biologically. In order to ascertain their chemical properties it was necessary to use a range of dilutions after each isolation step. It would appear that similar types of compounds are present in smoke extracts derived from different plant material.     

A gas chromatographic investigation of the influence of different carbon sources on the production of volatile compounds by Dipodascus aggregatus

Summary The yeast fungus Dipodascus aggregatus was cultivated aerobically on different carbon sources. The growth was measured turbidimetrically and related to the simultaneus production of volatile compounds, which was determined by a gas chromatographic head-space technique. The same culture could be analyzed many times and up to 15 components were detected in a chromatogram recorded in 18 min. The main peaks were identified and the chromatograms quantitatively evaluated by peak height measurements.All the carbon sources tested were utilized for growth even if the lag phase was prolonged on xylose and ethanol. The production of volatile compounds from the different carbon sources decreased as follows; ethanol>glucose>fructose>glycerol >xylose and succinic acid. A good carbon source for growth could be unsuitable for the formation of volatile products and vice versa.The time course production of volatile components was recorded. On each separate carbon source the formation of volatiles was correlated to growth until the end of the exponential phase of growth.An extraction procedure including the addition of an internal standard was used to determine the exact concentrations of 9 components at near optimum production. The amounts varied between 0.1–32 mg/l medium when the fungus was grown on 5% glucose.     

An assay for inorganic pyrophosphate in chondrocyte culture using anion-exchange high-performance liquid chromatography and radioactive orthophosphate labeling

A method is described for determination of inorganic pyrophosphate (PPi) in cell culture medium and in rabbit articular chondrocytes grown in the presence of radioactive orthophosphate (32Pi). Intra- and extracellular 32PPi formed was measured using high-performance liquid chromatographic (HPLC) separation of the PPi from orthophosphate (Pi) and other phosphate-containing compounds. The chromatographic separation on a weak anion-exchange column is based on the extent to which various phosphate compounds form complexes with Mg2+ at low pH and the rate at which such formation occurs. These complexes are eluted more readily than the uncomplexed compounds. Best results were obtained using a simultaneous gradient of Mg2+ ions and ionic strength. In this case separation of small amounts of PPi from a large excess of Pi was possible without prior removal of Pi or extraction of the PPi fraction. The assay is also useful for measurement of inorganic pyrophosphatase activity. The sensitivity of the assay depends on the specific activity of the added 32Pi and on the culture conditions, but is comparable with the most sensitive of the enzymatic assays. Sample preparation, particularly deproteinization, proved to be of importance. The losses of PPi which occur during procedures of this sort due to hydrolysis and coprecipitation were quantitated.     

Thin-layer Chromatography of Triose Reductone and its Relative Compounds

Application of thin-layer chromatographic techniques to the analysis and preparation of triose reductone from naturally occuring reductone compounds has become an important tool in reductone chemistry. A satisfactory method for the separation of triose reductone and related compounds by thin-layer chromatography, using silica gel plate and various solvents as developer, is described. Seven reductones were separated from each other by two-dimensional chromatography.     

Determination of volatile organic compounds by solid-phase microextraction

The parameters of the process of isolation, concentration, and gas chromatographic analysis of volatile organic compounds by solid-phase microextraction were optimized. With different amounts of a mixture of essential oils, the conditions of reproducibility of their determination were established based on the absolute values of the squares of chromatographic peaks obtained by capillary gas chromatography. It was found that the efficiency of the extraction of volatile compounds from gas phase by sorption on mixed polymer (consisting of polydimethylsiloxane and divinylbenzene) was significantly influenced by the structure of their molecules, while the sorption time and their content in the liquid phase influenced the significance of determination.     

The influence of different nitrogen sources on the production of volatile compounds by Dipodascus aggregatus

Summary The yeast fungus Dipodascus aggregatus was grown aerobically on 9 different nitrogen sources and the production of volatile compounds determined by a gas chromatographic head-space technique. Excellent growth was supported by glutamine, aspartic acid, asparagine, (NH₄)₂-tartrate and NH₄H₂PO₄. Valine, leucine, and particularly isoleucine were utilized with a somewhat lower growth rate. Lysine was rapidly utilized after a prolonged lag phase.The highest production of volatile compounds was obtained from leucine and isoleucine. At least 20 volatile compounds were formed from each of them and many products were detected in high concentrations. Intermediate amounts of volatile compounds were produced from asparagine, the ammonium salts and valine, and low amounts from lysine, glutamine and aspartic acid.Ethyl acetate was a major product irrespective of the nitrogen source used. Regarding the pattern of volatile compounds produced, leucine, isoleucine and valine had much in common. Most of the volatile products formed from these amino acids contained a branched carbon chain and at least three high-boiling components eluted later than n-amyl acetate from the gas chromatographic column. The other six nitrogen sources could be grouped together. In general the same volatile compounds were formed from these sources, but the quantities of the individual compounds differed. Only one component eluted later than n-amyl acetate. No basic difference in production of volatile compounds was observed between the ammonium salts and -amino compounds like lysine and asparagine.     

Anaerobic oxidation of n-dodecane by an addition reaction in a sulfate-reducing bacterial enrichment culture

We identified trace metabolites produced during the anaerobic biodegradation of H(26)- and D(26)-n-dodecane by an enrichment culture that mineralizes these compounds in a sulfate-dependent fashion. The metabolites are dodecylsuccinic acids that, in the case of the perdeuterated substrate, retain all of the deuterium atoms. The deuterium retention and the gas chromatography-mass spectrometry fragmentation patterns of the derivatized metabolites suggest that they are formed by C---H or C---D addition across the double bond of fumarate. As trimethylsilyl esters, two nearly coeluting metabolites of equal abundance with nearly identical mass spectra were detected from each of H(26)- and D(26)-dodecane, but as methyl esters, only a single metabolite peak was detected for each parent substrate. An authentic standard of protonated n-dodecylsuccinic acid that was synthesized and derivatized by the two methods had the same fragmentation patterns as the metabolites of H(26)-dodecane. However, the standard gave only a single peak for each ester type and gas chromatographic retention times different from those of the derivatized metabolites. This suggests that the succinyl moiety in the dodecylsuccinic acid metabolites is attached not at the terminal methyl group of the alkane but at a subterminal position. The detection of two equally abundant trimethylsilyl-esterified metabolites in culture extracts suggests that the analysis is resolving diastereomers which have the succinyl moiety located at the same subterminal carbon in two different absolute configurations. Alternatively, there may be more than one methylene group in the alkane that undergoes the proposed fumarate addition reaction, giving at least two structural isomers in equal amounts.     

Physiological Investigations on the Banana Plant: Factors which Affect the Nitrogen Compounds of the Leaves

Banana plants (Musa acuminate cv. Gros Michel) have been grownin sand culture, irrigated with a full nutrient solution andwith solutions deficient in each of several nutrient elements.The growth was continued long enough to establish the conditionscharacteristic of these nutrient treatments. Extracts of leaves,sampled according to their position on the axis, have been madefrom plants grown in full nutrient solution; these extractshave been examined by chromatographic methods to detect anddetermine the various nitrogen compounds they contain (A) Therelative proportions of the soluble nitrogen compounds of thebanana leaf are quite different from those of the fruit and,in response to the deficiency of specified mineral nutrients,both the total amount and the relative composition of the solublenitrogen fraction are greatly affected. The results are interpretedin terms of the more active accumulation of soluble compoundsin young leaves and the maintenance of a low amide (glutamine)level in leaves engaged in protein synthesis. The accumulationof soluble nitrogen compounds when growth and synthesis arearrested, and the relative accumulation of a specified numberof nitrogenous substances, due to the lack of a nutrient element,indicates that metabolic blocks in reaction pathways occur.Examples of these effects are given and are related to nutritionaldeficiency (B).     

Observations on 6-mercaptopurine activity in Saccharomyces cerevisiae

Abstract Hydrogen fluoride treatment of [¹⁴C-glycerol]lipoteichoic acid synthesized by growing Streptococcus faecium ATCC9790 in the presence of 1,3[¹⁴C]glycerol produced five radioactive, water-soluble products which were identified by chromatographic and analytical techniques to be tetraglucosyl glycerol, triglucosyl glycerol, diglucosyl glycerol, monoglucosyl glycerol and unsubstituted glycerol. The percent composition of each varied modestly from culture to culture and ranged between 7 and 8% for the tetra-, 20.5 and 31.2% for the tri-, 11.3 to 23.5% for the di-, 20.9 to 26.8% for the mono-, and 23.1 to 34.8% for the unsubstituted glycerol. The same glucosylated glycerol compounds could be obtained in an in vitro reaction in which a 30 000 × g particulate enzyme catalyzed the incorporation of [³H]glucose from UDP [³H]glucose into lipoteichoic acid.     

Medium composition and methyl jasmonate influence the amount and spectrum of secondary metabolites in callus cultures of Zanthoxylum stenophyllum Hemsl.

Callus cultures of Zanthoxylum stenophyllum were initiated in vitro and the effect of growth regulators and elicitors was tested both upon callus growth and secondary metabolite production. On a medium containing naphthaleneacetic acid, kinetin, and 2,4-dichlorophenoxyacetic acid, a yellowish and friable callus was obtained from 90% of cotyledon explants. Callus growth and secondary metabolite accumulation was followed after sub-culturing the established callus culture on different media containing various hormonal combinations. Results indicate that medium containing naphthaleneacetic acid and a higher concentration of 2,4-dichlorophenoxyacetic acid gave the highest stimulation of growth. Addition of an organic nitrogen source also had a positive effect on growth. Rapid HPLC screening of methanol extractable secondary metabolites from calluses showed that phytohormones and nutrients were able to modify the chromatographic pattern of compounds. Calluses grown on the medium giving the highest stimulation of growth show a reduced accumulation of some secondary products, but not all. In response to elicitation by methyl jasmonate, metabolite production was different for the different classes of compounds, and hormonal composition of the culture medium influenced the response. Thus, results confirm the importance of the reciprocal interactions between hormones, nutrients, and elicitors when attempts are made to enhance secondary metabolite accumulation in in vitro cultures.     

Biosynthesis of thiamin in Bacillus subtilis. Isolation of mutants accumulating 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate.

Thiamin-deficient mutants of Bacillus subtilis were characterized by their growth responses to the pyrimidine and thiazole moieties of the vitamin molecule and by cross-feeding tests. All mutants growing on the thiazole moiety and all mutants with an absolute requirement for thiamin fed all those growing on the pyrimidine moiety. No other cross-feeding effects were observed. From the culture fluid of a mutant growing on the thiazole moiety, two compounds were isolated which supported growth of mutants requiring the pyrimidine moiety. These compounds were identified by chromatographic, bioautographic and spectrophotometric procedures as 4-amino-5-hydroxymethyl-2-methylpyrimidine and its monophosphate derivative.