Evaluating the potential causes of range limits of birds of the Colombian Andes

Aim To evaluate how factors acting at different spatial scales influence range limits in bird species of the Colombian Andes. Location Andes Mountains of Colombia. Methods We used Maxent , a climate envelope model (CEM), and environmental and geographic information to study range‐filling (i.e. the extent to which a species occurs in all the areas in which it is predicted to occur) in 70 range‐restricted bird species of the Colombian Andes. Environmental data were taken from the WorldClim database, and species occurrence data were taken from museum data collated by the BioMap project, an observational database, and the literature. We evaluated how climate and geographic barriers may shape range limits at two scales. Results At a broad extent (i.e. across the three main cordilleras within the Colombian Andes), we find that CEMs predict there to be suitable environmental conditions for particular species in regions where the species is absent, possibly as a result of dispersal limitation or biotic interactions. In contrast, at a finer scale (within a given cordillera), species generally occur across the entire area predicted to be suitable by a given CEM. Geographic discontinuities within cordilleras do not generally correspond to range limits; instead, range limits correspond to changes in environmental conditions. Main conclusions Our results suggest that different mechanisms influence the presence of species at different scales. Dispersal limitation, potentially combined with species interactions, may influence range limits at a broad extent (the entire Colombian Andes), while strong environmental gradients correspond to range limits at a finer scale (within a cordillera).     

Modelling changes in species’ abundance in response to projected climate change

Aim Existing climate envelope models give an indication of broad scale shifts in distribution, but do not specifically provide information on likely future population changes useful for conservation prioritization and planning. We demonstrate how these techniques can be developed to model likely future changes in absolute density and population size as a result of climate change. Location Great Britain. Methods Generalized linear models were used to model breeding densities of two northerly‐ and two southerly‐distributed bird species as a function of climate and land use. Models were built using count data from extensive national bird monitoring data and incorporated detectability to estimate absolute abundance. Projections of likely future changes in the distribution and abundance of these species were made by applying these models to projections of future climate change under two emissions scenarios. Results Models described current spatial variation in abundance for three of the four species and produced modelled current estimates of national populations that were similar to previously published estimates for all species. Climate change was projected to result in national population declines in the two northerly‐distributed species, with declines for Eurasian curlew Numenius arquata projected to be particularly severe. Conversely, the abundances of the two southerly distributed species were projected to increase nationally. Projected maps of future abundance may be used to identify priority areas for the future conservation of each species. Main conclusions The analytical methods provide a framework to make projections of impacts of climate change on species abundance, rather than simply projected range changes. Outputs may be summarized at any spatial scale, providing information to inform future conservation planning at national, regional and local scales. Results suggest that as a consequence of climate change, northerly distributed bird species in Great Britain are likely to become an increasingly high conservation priority within the UK.     

40年间红耳鹎在中国的分布变化探讨

红耳鹎(Pycnonotus jocosus)为华南区常见鸟类。我们在整理中国鹎科鸟类分布区变化情况时发现,2006年以来红耳鹎的地理分布范围发生较大的变化。本文收集整理了中国1976至2016年期间红耳鹎的分布信息,并利用GIS技术详细地描述分析了该物种的地理分布变化情况。结果显示,红耳鹎jocosus亚种的分布范围呈现一个辐射状的扩散趋势,且向北方地区迁移。除少数扩散属人为因素造成外,基本上都是自然扩散。本研究还初步讨论了生境选择、繁殖习性以及食性等生态特征对红耳鹎扩散的影响,并对该物种地理分布扩散可能造成的影响进行讨论。     

Geographic patterns in the distribution of Palearctic songbirds

A database was created of digitized equal area distribution maps of 3,036 phylogenetic species of Palearctic songbirds. Biogeographic patterns are reported for two data sets: (1) including all passeriform bird species reported as breeding within the boundaries of our study map, (2) passeriform species restricted in their distribution to our study region, thus excluding the partly extra-limital taxa. With respect to the data set excluding partly extra-limital taxa, the average range size is 238 grid cells (grid cell area: 4,062 km²). Analysis of the geographic distribution of species richness for the full data set showed several hotspot regions, mostly located in mountainous areas. The index of range-size rarity identified similar hotspot regions as that for species richness, albeit that the range-size rarity de-emphasized the central Siberian hotspot. Range-size rarity hotspots that are not evident on the measure of species richness concern a great number of islands. Much more prominent on the index of range-size rarity are the Atlas Mountains of northern Africa, the Jabal al Akhdar region in NE Libya, and the eastern border of the Mediterranean. Restricting the analysis of geographic variation to the 25% of the species with smallest ranges resulted in a greatly simplified pattern of hotspots. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Morphological and genetic study of Prorocentrum donghaiense Lu from the East China Sea, and comparison with some related Prorocentrum species

In this paper, the detailed morphology of Prorocentrum donghaiense Lu from both field samples and cultures was examined, and a taxonomic comparison was made between P. donghaiense and some related Prorocentrum spp. using morphological and molecular data and other published information. There were distinct differences among these species in morphological characteristics that historically have been presented as conservative features. The discrepancies extended beyond that of individual variations within the same species due to environmental factors. Therefore, these morphological features may not be conservative but, rather, polymorphic depending on environmental conditions. Based on this analysis, we suggest that the high-biomass bloom-forming species in the East China Sea, previously reported as Prorocentrum dentatum Stein, is P. donghaiense Lu. The species reported from the East China Sea and Japanese and Korean waters appear to be the same species. Molecular data also suggest that P. dentatum (CCMP1517) and P. donghaiense are genetically identical. Therefore, the geographic distribution of P. donghaiense may be much wider than expected.     

Predicting species distributions across the Amazonian and Andean regions using remote sensing data

Aim We explore the utility of newly available optical and microwave remote sensing data from the Moderate Resolution Imaging Spectroradiometer (MODIS) and QuikSCAT (QSCAT) instruments for species distribution modelling at regional to continental scales. Using eight Neotropical species from three taxonomic groups, we assess the extent to which remote sensing data can improve predictions of their geographic distributions. For two bird species, we investigate the specific contributions of different types of remote sensing variables to the predictions and model accuracy at the regional scale, where the benefits of the MODIS and QSCAT satellite data are expected to be most significant. Location South America, with a focus on the tropical and subtropical Andes and the Amazon Basin. Methods Potential geographic distributions of eight species, namely two birds, two mammals and four trees, were modelled with the maxent algorithm at 1‐km resolution over the South American continent using climatic and remote sensing data separately and combined. For each species and model scenario, we assess model performance by testing the agreement between observed and simulated distributions across all thresholds and, in the case of the two focal bird species, at selected thresholds. Results Quantitative performance tests showed that models built with remote sensing and climatic layers in isolation performed well in predicting species distributions, suggesting that each of these data sets contains useful information. However, predictions created with a combination of remote sensing and climatic layers generally resulted in the best model performance across the three taxonomic groups. In Ecuador, the inclusion of remote sensing data was critical in resolving the known geographically isolated populations of the two focal bird species along the steep Amazonian–Andean elevational gradients. Within remote sensing subsets, microwave‐based data were more important than optical data in the predictions of the two bird species. Main conclusions Our results suggest that the newly available remote sensing data (MODIS and QSCAT) have considerable utility in modelling the contemporary geographical distributions of species at both regional and continental scales and in predicting range shifts as a result of large‐scale land‐use change.     

Die Datenbanken PaleoTax und Goniat - Vorstufen eines paläontologischen Informationssystems

The database systems PaleoTax and GONIAT provide detailed information on literature, taxonomy, morphology and occurrence of fossil invertebrate groups. PaleoTax is designed for Mesozoic corals, GONIAT for Paleozoic ammonoids, but both can be modified to cover other fossil groups. Both systems use dBASE format, but with different database structures. PaleoTax aims at the complete storage of all available objective data, GONIAT provides determinations based upon morphologic criteria, and includes information on geographic distribution and stratigraphic range of every taxon. A combination of both systems could lead to the establishment of a comprehensive paleontological information system useful for research and practical stratigraphic applications.     

varver: a database of microsatellite variation in vertebrates

Understanding how genetic variation is maintained within a species is important in ecology, evolution, conservation and population genetics. Tremendous efforts have been made to evaluate the patterns of genetic variation in natural populations of various species. For this purpose, microsatellites have played a major role since the 1990s. Here we describe a comprehensive database, varver (Variation in Vertebrates) that provides complete information regarding microsatellite variation in natural populations of vertebrates. For each species, varver includes basic information of the species, a list of publications reporting the microsatellite variation, and tables of genetic variation within and between populations (heterozygosity and F_ST). The geographic location and rough sampling range are also shown for each sampled population. The database should be useful for researchers interested in not only specific species but also comparing multiple species. We discuss the utility of microsatellite data, particularly for meta‐analyses that involve multiple microsatellite loci from various species. We show that in such analyses, it is extremely important to correct for biases caused by differences in mutation rate, mainly due to repeat unit and number.     

Quantification of climatic niches in birds: adding the temporal dimension

Quantification of the climatic niche from geographic occurrences is an increasingly important tool for studying species’ relationships to their environment, for example to predict responses to climate change. However, as the geographic distributions of birds are seasonally dynamic, they pose a challenge to carrying out comparable and appropriate quantification of climatic niches. In this review, we first assess how relevant seasonal dynamics are across birds as a whole by compiling a database of migratory behaviour for 10 443 bird species. Second, we examine how studies have quantified climatic niches of birds. Finally, using Australia as a case study, we investigate how well existing distribution datasets represent temporal dynamics by comparing seasonal patterns of species richness obtained from point‐occurrence data with those from range maps and assess the consequences for niche quantification. We provide a consistent classification of migratory behaviour across all birds, and find that a huge variety exists between and within species that should be considered when quantifying climatic niches. Despite this, our review of the literature revealed that seasonal dynamics have often not been accounted for. For future studies, we provide a framework for selecting appropriate occurrence data depending on migratory behaviour and data availability. Our comparison of seasonal species richness patterns obtained from extent‐of‐occurrence range maps and point‐occurrence data suggests that range maps are less able to detect temporal dynamics of bird distributions than point‐occurrence data. We conclude that seasonally explicit range maps combined with climatic data for the corresponding time period can be used to adequately quantify climatic niches for resident birds, but are not adequate to quantify the climatic niches of migratory and nomadic species. Therefore, consistent quantification of climatic niches across all birds requires temporally explicit occurrence points. As such, increasing the availability of occurrence data and methods correcting biases should be a priority.     

Colour polymorphism is associated with lower extinction risk in birds

Colour polymorphisms have played a major role in enhancing current understanding of how selection and demography can impact phenotypes. Because different morphs often display alternative strategies and exploit alternative ecological niches, colour polymorphism can be expected to promote adaptability to environmental changes. However, whether and how it could influence populations' and species' response to global changes remains debated. To address this question, we built an up‐to‐date and complete database on avian colour polymorphism based on the examination of available data from all 10,394 extant bird species. We distinguished between true polymorphism (where different genetically determined morphs co‐occur in sympatry within the same population) and geographic variation (parapatric or allopatric colour variation), because these two patterns of variation are expected to have different consequences on populations' persistence. Using the IUCN red list, we then showed that polymorphic bird species are at lesser risk of extinction than nonpolymorphic ones, after controlling for a range of factors such as geographic range size, habitat breadth, life history, and phylogeny. This appears consistent with the idea that high genetic diversity and/or the existence of alternative strategies in polymorphic species promotes the ability to adaptively respond to changing environmental conditions. In contrast, polymorphic species were not less vulnerable than nonpolymorphic ones to specific drivers of extinction such as habitat alteration, direct exploitation, climate change, and invasive species. Thus, our results suggest that colour polymorphism acts as a buffer against environmental changes, although further studies are now needed to understand the underlying mechanisms. Developing accurate quantitative indices of sensitivity to specific threats is likely a key step towards a better understanding of species response to environmental changes.     

中国蜥蜴类生活史和生态学特征数据集

截至2020年底, 中国共有226种蜥蜴类(不包括外来入侵种), 是世界上蜥蜴类多样性最丰富的国家之一。系统整理中国现有蜥蜴类的特征数据在物种起源与进化、形成与灭绝、保护生物学等研究中具有重要意义。但是, 目前还没有关于我国蜥蜴类生活史、生态学和地理分布等物种特征的完整数据库。本文通过系统查阅文献和数据资料, 共收集整理了中国现有226种本土蜥蜴类19个特征数据: 描述年份、中国受威胁等级、全球受威胁等级、是否中国特有种、是否岛屿特有种、平均体长、平均体重、食性、窝卵数、繁殖模式、四肢发育、活动时间、栖息生境、栖息地类型、栖息地宽度、海拔分布范围、地理分布范围、动物地理界和分布省份。在上述特征中, 除了四肢发育、描述年份、是否中国特有种、是否岛屿特有种和分布省份外, 其余特征数据均存在不同程度的缺失, 数据完整度为47.14%-100%。本数据集是目前关于中国蜥蜴类最新和最全的物种特征数据库, 可为我国蜥蜴类生态学、进化生物学、生物地理学和保护生物学等研究领域提供数据支持。     

Antarctic, Sub-Antarctic and cold temperate echinoid database

This database includes spatial data of Antarctic, Sub-Antarctic and cold temperate echinoid distribution (Echinodermata: Echinoidea) collected during many oceanographic campaigns led in the Southern Hemisphere from 1872 to 2010. The dataset lists occurrence data of echinoid distribution south of 35°S latitude, together with information on taxonomy (from species to genus level), sampling sources (cruise ID, sampling dates, ship names) and sampling sites (geographic coordinates and depth). Echinoid occurrence data were compiled from the Antarctic Echinoid Database (David et al. 2005a), which integrates records from oceanographic cruises led in the Southern Ocean until 2003. This database has been upgraded to take into account data from oceanographic cruises led after 2003. The dataset now reaches a total of 6160 occurrence data that have been checked for systematics reliability and consistency. It constitutes today the most complete database on Antarctic and Sub-Antarctic echinoids.     

The ability of Nature Reserves to conserve medicinal plant resources: A case study in northeast China

Medicinal plants are important resources and are under serious threat due to human interference and climate change. We used species richness maps to find hotspots of medicinal plant localities and then modeled the environmental variables with a large effect on their distribution. We began by using a combination of species distribution models (SDMs) and geographic information system (GIS) tools to generate species richness maps of medicinal plants in northeast China. First, we conducted a detailed investigation of 2884 study plots in northeast China and selected 49 medicinal plant species for further analysis. The field surveys performed for this study spanned four years and identified a large number of new populations of medicinal plants in the forests of northeast China. We modeled and mapped the potential distributions of these 49 species and found that species richness hotspots are concentrated in the eastern and northeastern areas of the study region. We then analyzed the results of jackknife tests and found that the most important environmental variables on medicinal plant distribution are related to precipitation. Finally, we used the geographic distribution of medicinal plant richness to evaluate the ability of existing Nature Reserves to conserve these plants. By acquiring model data and using SDM and GIS to evaluate the current distribution and richness of medicinal plants, we are able to evaluate their current protection status and make recommendations about their utilization. This analysis could be expanded to assess medicinal plant populations in other regions where there are adequate records of the current distribution of medicinal plants.     

北京雾灵山自然保护区冬季鸟类物种多样性调查

采用固定调查样线法连续两年对北京雾灵山自然保护区冬季鸟类组成进行了调查,共记录鸟类7目14科44种,其中29种属于留鸟,5种为冬候鸟,7种旅鸟,3种夏候鸟;优势种以留鸟为主,表现出冬季鸟类群落的特点。古北界和东洋界的种类分别为75％和14％,在分布型上划分为7种类型。出现种类最多的生态环境是村落,鸟类种数为31种,其植被类型是低山砾石、农田林果带。调查种类中有国家一级保护鸟类1种,二级保护鸟类6种,北京市重点保护鸟类6种。通过与邻近地区相关调查比较,表明本区冬季鸟类具有较高的丰富性,并提出了有效保护鸟类多样性的对策。     

Combining surveys of river habitats and river birds to appraise riverine hydromorphology

1. Biological monitoring is vital to river conservation. Aside from providing census data, regular monitoring may detect population trends that reflect the degradation or remediation of riverine environments. Birds are major candidates for this purpose because of their connections to riverine food webs and river habitat features. However, much information on factors affecting river bird distributions is qualitative. 2. River bird populations have been surveyed annually in the U.K. since 1974. The value of this monitoring could be increased if links between population trends and changes in riverine landscapes or channel hydromorphology were better understood. We modelled the relationships between bird species’ distributions recorded by the British Trust for Ornithology's Waterways Breeding Bird Survey (WBBS) and hydromorphology recorded by the Environment Agency's River Habitat Survey (RHS). 3. Regression models were built for 20 bird species associated with the river channel and neighbouring floodplains. This provided one of the first illustrations in ecology of generalized estimating equations (GEEs) for extending generalized linear models to instances where individual observations are not statistically independent. GEEs could offer a range of benefits to freshwater biologists, as they are a simple approach to analysing hierarchical, correlated data while maintaining the ease of interpretation with a range of link functions and data types. 4. Upland, fast water species and reedbed specialists showed the closest links with RHS, followed by lowland, slow water species, where correlations to RHS varied widely in magnitude. The distributions of floodplain wading birds were poorly modelled by RHS, suggesting that floodplain land uses as quantified by RHS were poor predictors of distributions. Marked preferences between upland and lowland channels were evident for most species. Specific features were also important, including hydraulics, bank/channel vegetation, depositional features and anthropogenic structures. 5. Monitoring the abundance and distribution of a range of bird species, with a diversity of life histories, could be a valuable tool for assessing trends in riverine landscapes and whole river basins. RHS captures useful information about channel hydromorphology and vegetation, but needs supplementing with additional environmental information to describe (i) the wider riverine landscape (e.g. more detailed floodplain variables, proximity of other waterbodies) and (ii) water chemistry. Although further work is required, this study suggests that WBBS and RHS add mutual value in appraising the river environment. We advocate the further development of birds as indicators in riverine landscapes that could convey the importance of the ecological integrity, biological production and conservation value of river systems to a wider audience.     

Analyzing niche stability and biogeography of Late Ordovician brachiopod species using ecological niche modeling

Gauging the potential impacts of environmental change on the geographic distributions of species is a central area of modern biogeographic analysis, often involving complex models of species–environment interactions. The geographic distribution of fossil species can also provide a framework to test the impact of environmental change on biogeography and ecological niches of species, yet few paleontological analyses have attacked this question in deep time. Herein we present a quantitative biogeographic analysis to examine the stability of ecological niches and geographic ranges of rhynchonelliform brachiopods during an interval of sea level change preserved in Upper Ordovician strata of the Cincinnati Arch.The intensive sampling, excellent preservation, and numerous prior paleoecological and sedimentological analyses within the tri-state region of Kentucky, Indiana, and Ohio provide a robust framework for detailed paleobiogeographic study. Quantitative biogeographic modeling methods incorporating GIS (Geographic Information Systems) are utilized in order to spatially analyze the geographic ranges of brachiopod species of the Corryville and Mt. Auburn Formations of the C3 (uppermost Maysvillian) depositional sequence.This study employs the ecological niche modeling program GARP (Genetic Algorithm using Rule-set Prediction) to predict the geographic distribution of eight brachiopod species during three time slices within the C3 sequence. This method estimates a species’ geographic range by modeling the ecological niche of the species based on a set of known species occurrence data coupled with environmental data inferred from sedimentologic proxies. Once environmental tolerances for a species are modeled; the species is predicted to occur wherever its preferred set of environmental conditions occurs within the study region.Distributional patterns were reconstructed for three time slices during the C3 sequence. Recovered range predictions were quantitatively analyzed for evidence of temporal range changes. Results indicate that average species range within the study area decreased and species tracked their preferred niche with high fidelity during the transition from the early to middle portions of the C3 depositional sequence, an interval of rapid relative sea level change. However, during the transition from the middle to late portions of the sequence, gradual shallowing within the basin and development of discontinuous habitat patches correlates with niche evolution of five of the eight species modeled. The average area a species occupied within the basin increased during this interval, but there is a mixed response including both increases and decreases in range size within the study group. In general, the species that exhibit niche evolution increased their geographic range size while those that continue to track their niche with high fidelity experience a decrease in geographic range size. During the latter half of the C3 sequence, previously continuous habitats become fragmented, thereby isolating individual populations and providing a mechanism for niche evolution. The rate of sea level change and the corresponding fragmentation of previously continuous habitats into isolated patches appear to be the primary controls on both mean geographic range size and relative degree of niche evolution.     

Response of birds to climatic variability; evidence from the western fringe of Europe

Ireland’s geographic location on the western fringe of the European continent, together with its island status and impoverished avifauna, provides a unique opportunity to observe changes in bird migration and distribution patterns in response to changing climatic conditions. Spring temperatures have increased in western Europe over the past 30 years in line with reported global warming. These have been shown, at least in part, to be responsible for changes in the timing of life cycle events (phenology) of plants and animals. In order to investigate the response of bird species in Ireland to changes in temperature, we examined ornithological records of trans-Saharan migrants over the 31-year period 1969–1999. Analysis of the data revealed that two discrete climatic phenomena produced different responses in summer migrant bird species. Firstly, a number of long-distance migrants showed a significant trend towards earlier arrival. This trend was evident in some species and was found to be a response to increasing spring air temperature particularly in the month of March. Secondly, (1) a step change in the pattern of occurrences of non-breeding migrant bird species, and (2) an increase in the ringing data of migrant species were found to correlate with a step change in temperature in 1987–1988. These results indicate that, for migrant bird species, the impact of a sudden change in temperature can be as important as any long-term monotonic trend, and we suggest that the impact of step change events merits further investigation on a wider range of species and across a greater geographical range.     

Interspecific abundance-range size relationships: range position and phylogeny

A number of mechanisms have been proposed to explain the widely observed positive interspecific relationship between local abundance and extent of geographic distribution in animals Here, we use data on British birds to assess two of these hypotheses that the relationship results from the relative position of a study area with respect to the geographic ranges of the species which occur there, and that the relationship results from a simple difference between taxonomic groups, rather than any general tendency for more abundant species to have larger range sizes We find support for neither hypothesis Phylogenetically controlled comparative analyses reveal that the positive abundance-range size relationship is consistently found within taxa, even when abundance and range size are calculated at a variety of spatial and temporal scales Analyses both across species and within taxa show that bird species for which Britain is near to the centre of their distribution in Europe tend to have larger British range sizes and higher abundances than do species where Britain is close to the edge of their range in Europe However, these relationships do not cause that between abundance and range size, because this latter relationship persists within different range position categories Whether a species is near the centre or edge of its geographic range in Britain may affect its position on the abundance-range size relationship, but does not produce the relationship Range position in Britain does, however, seem to be related to the magnitude of temporal changes in the range sizes of British birds There is some evidence to suggest that species for which Britain is nearer to their European range centre have shown smaller changes in distribution over the period 1970–1990 than have species for which Britain is close to their European range edge