Amorphous mineral incrustations in the moss Homalothecium sericeum

Abstract

Internal mineral deposits in stem and seta were found in living, healthy-looking specimens of the moss Homalothecium sericeum from a Spanish locality. The deposits consisted of an amorphous crust of smooth texture. After examination with EDS probes coupled to a transmission and a scanning electron microscope, and X-ray diffraction analysis, the minerals were identified as mainly opal, carbonates, and Fe and Al hydroxides, although it is irregular throughout a given mineralized region of the moss. These mineral crusts are considered to be the product of biomineralization of ions taken from the substratum. A comparison is established between these deposits and the mineral crystals found in a previous study of Hookeria lucens.     

贺兰山东麓荒漠藻结皮微生物群落结构及其演替研究

以宁夏贺兰山东麓荒漠藻结皮为研究对象,对处于不同发育阶段的藻结皮中微生物群落结构及其演替进行了研究。结皮样品高通量测序结果分别得到521个16S rDNA序列操作分类单元(OTU)和64个18S rDNA序列OTU,表明藻结皮中原核微生物多样性远高于真核微生物;贺兰山东麓藻结皮中原核微生物分布于26个纲,Cyanobacteria在各个发育阶段中都是优势微生物类群,Actinobacteria、Chloroplast、Alphaproteobacteria和Bacilli在藻结皮发育的各个阶段相对丰度也较高;从属水平上分析,Bacillus、Leptolyngbya、Microcoleus、Microvirga、Chroococcidiopsis、Rubellimicrobium、Phormidium、Mastigocladopsis、Skermanella、Nostoc、Scytonema共11个属在各个发育阶段的藻结皮中都存在,只是出现了丰度的差异。Bacillus在藻结皮形成期、发育初期和发育中期相对丰度较大,成熟期丰度显著下降,而成熟期Microvirga丰度较前3个时期显著增...     

Ultrastructure of the inner surface of the aorta of mature and old animals

In the experiments, performed on 12 white rats and 8 rabbits, by means of scanning electron microscopy of the native preparations and in a number of cases with use of silver nitrate impregnation, the internal surface structure has been studied in the aortal membrane of mature and old animals. At ageing the integrity and continuity of the endothelial monolayer is preserved, on the surface local intimal pits, craters and microdefects appear, adhesiveness of endothelium to leucocytes increases. Orientation of the intimal folds is disturbed. The type of the senescent remodeling in the endothelial layer revealed predisposes to development of atherosclerosis.     

Microbial Community Structure in Three Deep-Sea Carbonate Crusts

Carbonate crusts in marine environments can act as sinks for carbon dioxide. Therefore, understanding carbonate crust formation could be important for understanding global warming. In the present study, the microbial communities of three carbonate crust samples from deep-sea mud volcanoes in the eastern Mediterranean were characterized by sequencing 16S ribosomal RNA (rRNA) genes amplified from DNA directly retrieved from the samples. In combination with the mineralogical composition of the crusts and lipid analyses, sequence data were used to assess the possible role of prokaryotes in crust formation. Collectively, the obtained data showed the presence of highly diverse communities, which were distinct in each of the carbonate crusts studied. Bacterial 16S rRNA gene sequences were found in all crusts and the majority was classified as α-, γ-, and δ- Proteobacteria. Interestingly, sequences of Proteobacteria related to Halomonas and Halovibrio sp., which can play an active role in carbonate mineral formation, were present in all crusts. Archaeal 16S rRNA gene sequences were retrieved from two of the crusts studied. Several of those were closely related to archaeal sequences of organisms that have previously been linked to the anaerobic oxidation of methane (AOM). However, the majority of archaeal sequences were not related to sequences of organisms known to be involved in AOM. In combination with the strongly negative δ ¹³C values of archaeal lipids, these results open the possibility that organisms with a role in AOM may be more diverse within the Archaea than previously suggested. Different communities found in the crusts could carry out similar processes that might play a role in carbonate crust formation.     

Water Content�CWater Activity�CGlass Transition Temperature Relationships of Spray-Dried Boroj�� as Related to Changes in Color and Mechanical Properties

The water content–water activity–glass transition temperature relationships of commercial spray-dried borojó powder, with and without maltodextrin, have been studied as related to changes in color and mechanical properties. The GAB and Gordon and Taylor models were well fitted to the sorption and glass transition data, respectively. The Boltzman equation adequately described the evolution of the mechanical parameter characterized in the samples with the difference between the experimental temperature and the glass transition temperature (T _g) of the sample. The color of the samples showed a sigmoid change with water activity. The changes in the mechanical properties of borojó powder related to collapse development started when the sample moved to the rubbery state and began to be significant at about 10 °C above T _g. The increase in the molecular mobility from this point on also favors browning reactions. Maltodextrin presence slows the caking kinetics but induces color changes to spray-dried borojó powder.     

Improved Method for Determination of Respiring Individual Microorganisms in Natural Waters

A method is reported that combines the microscopic determinations of specific, individual, respiring microorganisms by the detection of electron transport system activity and the total number of organisms of an estuarine population by epifluorescence microscopy. An active cellular electron transport system specifically reduces 2-(p-iodophenyl)-3-(p-nitrophenyl)-5-phenyl tetrazolium chloride (INT) to INT-formazan, which is recognized as opaque intracellular deposits in microorganisms stained with acridine orange. In a comparison of previously described sample preparation techniques, a loss of >70% of the counts of INT-reducing microorganisms was shown to be due to the dissolution of INT-formazan deposits by immersion oil (used in microscopy). In addition, significantly fewer fluorescing microorganisms and INT-formazan deposits, both ≤0.2 μm in size, were found for sample preparations that included a Nuclepore filter. Visual clarity was enhanced, and significantly greater direct counts and counts of INT-reducing microorganisms were recognized by transferring microorganisms from a filter to a gelatin film on a cover glass, followed by coating the sample with additional gelatin to produce a transparent matrix. With this method, the number of INT-reducing microorganisms determined for a Chesapeake Bay water sample was 2-to 10-fold greater than the number of respiring organisms reported previously for marine or freshwater samples. INT-reducing microorganisms constituted 61% of the total direct counts determined for a Chesapeake Bay water sample. This is the highest percentage of metabolically active microorganisms of any aquatic population reported using a method which determines both total counts and specific activity.     

“In vitro” biofilm formation by Penicillum frequentans strains on sandstone,granite, and limestone

The appearance of crusts or patinas on surfaces of stone monuments are indicative signs of weathering. In many cases, microorganisms are mainly responsible for stone decay, giving rise to the formation of characteristic biodeteriorative patinas, called biofilms. In the present work, in vitro biofilm formation on sandstone, limestone, and granite block samples by Penicillium frequentans strains isolated from two Spanish cathedrals is demonstrated. Spore suspensions of P. frequentans strains were inoculated on each block sample of unaltered stone material cited above. Biofilms of 1–2 mm thickness were formed on each of the three rock samples, and analysed by means of Fourier-transform infrared spectroscopy, scanning electron microscopy and X-ray mapping (energy-dispersive X-ray spectrometry, KEVEX system). In the three cases, biofilms were principally composed of: fungal mycelium, mineral particles released from the stony substratum, and newly formed organic salts such as oxalate and citrate. These biofilms enhance and accelerate the deteriorative process of rocks due to the loss of stone material (biopitting and mineral grains captured by mycelium) and to alteration of the mineral crystalline networks (cation release by organic acids). Correspondence to: G. Gómez-Alarcón     

Solid State Characterization of Commercial Crystalline and Amorphous Atorvastatin Calcium Samples

Atorvastatin calcium (ATC), an anti-lipid BCS class II drug, is marketed in crystalline and amorphous solid forms. The objective of this study was to perform solid state characterization of commercial crystalline and amorphous ATC drug samples available in the Indian market. Six samples each of crystalline and amorphous ATC were characterized using X-ray powder diffractometry (XRPD), differential scanning calorimetry (DSC), thermogravimetric analysis, Karl Fisher titrimetry, microscopy (hot stage microscopy, scanning electron microscopy), contact angle, and intrinsic dissolution rate (IDR). All crystalline ATC samples were found to be stable form I, however one sample possessed polymorphic impurity, evidenced in XRPD and DSC analysis. Amongst the amorphous ATC samples, XRPD demonstrated five samples to be amorphous ‘form 27’, while, one matched amorphous ‘form 23’. Thermal behavior of amorphous ATC samples was compared to amorphous ATC generated by melt quenching in DSC. ATC was found to be an excellent glass former with T_g/T_m of 0.95. Residual crystallinity was detected in two of the amorphous samples by complementary use of conventional and modulated DSC techniques. The wettability and IDR of all amorphous samples was found to be higher than the crystalline samples. In conclusion, commercial ATC samples exhibited diverse solid state behavior that can impact the performance and stability of the dosage forms.     

Biocorrosion and biodeterioration of antique and medieval glass

Over the past few years we have examined various antique and medieval glasses with regard to general biogenic damage, biopitting (crater erosion), bio‐crusts, and opalescent and white biogenic films. Experiments were carried out on pieces from Roman glass bottles excavated near Abu Tor, Sinai, some pieces of green and blue glass from Cologne Cathedral, some pieces from a little church in Evreux, glass samples from the fortress of the former Dukedom of Delmenhorst near Oldenburg, and some neolithic flint tools from the Negev Desert, Israel. Modern glass from a pigsty (19th century) additionally has been used for laboratory experiments on the attack of glass surfaces by fungi and bacteria. Some of the bacteria used in these experiments were isolated from the ancient pieces of glass. Biopitting with structures very similar to the biopitting of marble and limestone was found on almost all specimens. Lichens were not identified directly, but fungi and algae were observed in the pits as well as under the thin layers exfoliating from the Roman glass bottles. Initial steps of colonization and the potential for heavy‐metal accumulation by the isolated bacteria have been shown in laboratory experiments. A fractal dimension of diffusion‐limited disaggregation (DLD) is suggested as one possible explanation for the characteristic form and structure of the microbially induced and shaped biopitting patterns. A biopitting classification is suggested.     

3种淡水布纹藻(硅藻纲)的超微结构研究

该研究利用光学和扫描电子显微镜对3种淡水布纹藻(钝布纹藻、库氏布纹藻和赛欧托布纹藻)的形态学进行了研究,以明确它们的精细结构特征;并分析讨论它们在中国的地理分布区域。结果表明：(1) 3种淡水布纹藻皆属于粗糙布纹组;从壳面观看,都具有S形和反S(S)形两种壳瓣外形。(2) 钝布纹藻具有弱的S形壳面外形、T形的外近端壳缝末稍和直的内近端壳缝末稍以及椭圆形的中央区;库氏布纹藻具有明显的S形壳面外形、略微向不同侧偏转的外近端壳缝末稍和直的内近端壳缝末稍以及椭圆形的中央区;赛欧托布纹藻具有弱的S形壳面外形、强烈钩状的外近端壳缝末稍和T形的内近端壳缝末稍以及倾斜的中央区。(3) 钝布纹藻在广东、广西、湖南、四川和云南等地有分布;库氏布纹藻在新疆和湖南等地有发现;赛欧托布纹藻分布于武陵山区,该文是其在中国淡水分布的首次报道。     

Description of an ancient social bee trapped in amber using diagnostic radioentomology

The application of non-invasive imaging technologies using X-radiation (diagnostic radioentomology, ‘DR’) is demonstrated for the study of amber-entombed social bees. Here, we examine the external and internal morphology of an Early Miocene (Burdigalian) stingless bee (Apinae: Meliponini) from the Dominican Republic using non-destructive X-ray microtomography analysis. The study permits the accurate reconstruction of features otherwise obscured or impossible to visualize without destroying the sample and allows diagnosis of the specimen as a new species, Proplebeia adbita Greco and Engel.     

Effects of stone topography on abundance of net-building caddisfly larvae and arthropod diversity in an upland stream

We investigated whether small pits on the surfaces of stream stones affected abundances of net-spinning, hydropsychid larvae (Trichoptera) and species diversity in the Acheron River, southeastern Australia. On stream stones, nets occurred more often in small (at least 5 mm width) pits than expected by chance. However, proportionately high numbers of pits were not associated with high abundances of either of two species of hydropsychid larvae (both Asmicridea spp). A colonization experiment, using bricks with 0, 4, 12 or 30 small (diam. 5.5 mm) and large (13 mm) pits drilled into the top surfaces, showed that numbers of nets were related to numbers of pits. Small pits were preferred over large ones and the pits, as a group, were occupied almost entirely by late instars of both species. However, only Asmicridea sp. 1 was more abundant on pitted bricks; Asmicridea sp. 2 showed no response. The differences between the species, and between the stone and brick results, can be explained by different proportions of late instars in the samples. Many I instars probably did not make nets. Hence, higher numbers of larvae on pitted surfaces is expected only when late instars are relatively frequent, as was true for Asmicridea sp. 1 on bricks. There were no effects of pits per se or increased numbers of hydropsychid nets on species diversity or the abundances of other common species. These results contrast with those of other studies, which found stone topography or hydropsychid nets to increase species diversity on stones.     

Structural,luminescent and in vitro studies of europium-doped soda lime phosphate glasses

In this article, we have reported the effect of varying concentration of europium (Eu) in (50 − x)% P₂O₅–25% Na₂O–24% CaO–% Eu₂O₃, where x = 1, 3, 5. The glass samples were synthesised via conventional melt-quench method. The impact of europium ion (Eu³⁺) on the structural, optical and luminescent properties of phosphate soda lime glasses has been studied using X-ray diffraction (XRD), Fourier-transformed infrared (FTIR) spectroscopy, ultraviolet-visible spectroscopy, scanning electron microscopy coupled with energy-dispersive spectroscopy and photoluminescent techniques. The amorphous nature of glass samples was confirmed by XRD patterns. FTIR confirmed the presence of various functional groups. The emission spectra of synthesised samples exhibited intense emission peaks corresponding to Eu³⁺ under excitation at 393 nm. Among all the peaks, the maximum intensity was observed for ⁵D₀ → ⁷F₂ transition. Judd–Ofelt (J–O) parameters (Ω₂, Ω₄) and other radiative parameters such as band width, radiative transition probabilities, stimulated emission cross-sections and branching ratio were determined from emission spectra. The other photometric parameters such as CIE coordinates and colour purity were also determined. Furthermore, cytotoxic studies were carried out on normal cell line human embryonic kidney cells (HEK-293) using MTT assay. Results showed that the prepared samples significantly enhanced growth in glass sample-treated cells as compared to control cells. These findings suggest that synthesised glass samples are biocompatible in nature and have potential for applications in display devices and biomedical research area.     

X-ray microscopy enables multiscale high-resolution 3D imaging of plant cells,tissues, and organs

Capturing complete internal anatomies of plant organs and tissues within their relevant morphological context remains a key challenge in plant science. While plant growth and development are inherently multiscale, conventional light, fluorescence, and electron microscopy platforms are typically limited to imaging of plant microstructure from small flat samples that lack a direct spatial context to, and represent only a small portion of, the relevant plant macrostructures. We demonstrate technical advances with a lab-based X-ray microscope (XRM) that bridge the imaging gap by providing multiscale high-resolution three-dimensional (3D) volumes of intact plant samples from the cell to the whole plant level. Serial imaging of a single sample is shown to provide sub-micron 3D volumes co-registered with lower magnification scans for explicit contextual reference. High-quality 3D volume data from our enhanced methods facilitate sophisticated and effective computational segmentation. Advances in sample preparation make multimodal correlative imaging workflows possible, where a single resin-embedded plant sample is scanned via XRM to generate a 3D cell-level map, and then used to identify and zoom in on sub-cellular regions of interest for high-resolution scanning electron microscopy. In total, we present the methodologies for use of XRM in the multiscale and multimodal analysis of 3D plant features using numerous economically and scientifically important plant systems.

Lab-based X-ray microscopy allows high-resolution 3D imaging of intact plant samples over a wide range of sample types and sizes, filling the imaging gap between light and electron microscopy.     

Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits

Fossil‐bearing asphalt deposits are an understudied and potentially significant source of ancient DNA. Previous attempts to extract DNA from skeletons preserved at the Rancho La Brea tar pits in Los Angeles, California, have proven unsuccessful, but it is unclear whether this is due to a lack of endogenous DNA, or if the problem is caused by asphalt‐mediated inhibition. In an attempt to test these hypotheses, a recently recovered Columbian mammoth (Mammuthus columbi) skeleton with an unusual pattern of asphalt impregnation was studied. Ultimately, none of the bone samples tested successfully amplified M. columbi DNA. Our work suggests that reagents typically used to remove asphalt from ancient samples also inhibit DNA extraction. Ultimately, we conclude that the probability of recovering ancient DNA from fossils in asphalt deposits is strongly (perhaps fatally) hindered by the organic compounds that permeate the bones and that at the Rancho La Brea tar pits, environmental conditions might not have been ideal for the general preservation of genetic material.     

Transmission electron microscopy X-ray microanalysis of two algae of the generaScenedesmus andSiderocelis

Summary Mineral deposits have been found in the cell walls of two newly described green algae,Siderocelis minor Crawford andScenedesmus granulatus West et West f.salina Crawford. A morphological account using transmission electron microscopy coupled with X-ray micro-analysis has shown that the deposits consist chiefly of iron and manganese though other elements were also found. Several possible explanations have been suggested for the variation in iron/manganese ratio—the ecological conditions pertaining in the natural habitat being considered particularly relevant.     

Microbial Biofilms on the Sandstone Monuments of the Angkor Wat Complex,Cambodia

Discoloring biofilms from Cambodian temples Angkor Wat, Preah Khan, and the Bayon and West Prasat in Angkor Thom contained a microbial community dominated by coccoid cyanobacteria. Molecular analysis identified Chroococcidiopsis as major colonizer, but low similarity values (<95%) suggested a similar genus or species not present in the databases. In only two of the six sites sampled were filamentous cyanobacteria, Microcoleus, Leptolyngbya, and Scytonema, found; the first two detected by sequencing of 16S rRNA gene library clones from samples of a moist green biofilm on internal walls in Preah Khan, where Lyngbya (possibly synonymous with Microcoleus) was seen by direct microscopy as major colonizer. Scytonema was detected also by microscopy on an internal wall in the Bayon. This suggests that filamentous cyanobacteria are more prevalent in internal (high moisture) areas. Heterotrophic bacteria were found in all samples. DNA sequencing of bands from DGGE gels identified Proteobacteria (Stenotrophomonas maltophilia and Methylobacterium radiotolerans) and Firmicutes (Bacillus sp., Bacillus niacini, Bacillus sporothermodurans, Lysinibacillus fusiformis, Paenibacillus sp., Paenibacillus panacisoli, and Paenibacillus zanthoxyli). Some of these bacteria produce organic acids, potentially degrading stone. Actinobacteria, mainly streptomycetes, were present in most samples; algae and fungi were rare. A dark-pigmented filamentous fungus was detected in internal and external Preah Khan samples, while the alga Trentepohlia was found only in samples taken from external, pink-stained stone at Preah Khan. Results show that these microbial biofilms are mature communities whose major constituents are resistant to dehydration and high levels of irradiation and can be involved in deterioration of sandstone. Such analyses are important prerequisites to the application of control strategies.     

Localization of selenium in bacterial cells using TEM and energy dispersive X-ray analysis

Bacteria isolated from lake sediment samples reduced sodium selenite to elemental selenium. Finestructural observations were made on a number of different bacterial species cultured in the presence of sodium selenite. Examination of Escherichia coli and a Pseudomonas species revealed electron-dense deposits of irregular shape, composed of smaller units, within the cytoplasm but not on the cell wall and cell membrane. Cells of Aeromonas and Flavobacterium species exhibited conspicuous intranuclear fibrillary aggregates and different electron-dense inclusions. It appeared that the membrane structures were somewhat more easily stained in some bacterial cells after growth on agar plates containing sodium selenite. The deposits and fibrillary accumulations were interpreted to contain selenium on the basis of energy dispersive X-ray analysis. Control preparations and cells grown in the presence of sodium selenate were void of any fine-structural abnormalities. Alterations in fine structure are discussed in relation to the metabolism of selenium by bacterial cells and possible sites of inhibition.Abbreviations TEM transmission electron microscopy - EDX energy dispersive X-ray     

基于克隆文库法研究古尔班通古特沙漠蓝藻多样性

该研究采用克隆文库法研究古尔班通古特沙漠藻类生物结皮中蓝藻多样性及分布.在古尔班通古特沙漠不同区域采集10份藻类结皮代表性土样,分别构建古尔班通古特沙漠蓝藻16S rRNA和psbA基因克隆文库,并进行系统发育分析,对蓝藻多样性和丰度与环境因子进行关联分析,研究蓝藻分布特点及影响因子.结果 显示:(1)16S rRNA...     

梣属11种植物次生木质部附物纹孔的电镜观测

应用扫描电镜对梣属11种植物次生木质部导管附物纹孔的分布和形态进行了详细的观察,应用Carnoy2.0软件和扫描电子显微镜采集的照片,测定了附物纹孔丰富度指标和纹孔数量特征指标。电镜观察表明,梣属11种研究植物次生木质部导管分子侧壁附物纹孔的分布和形态变化较大,附物纹孔丰富度指标的统计描述进一步证实附物纹孔的分布变化大;3个附物纹孔丰富度指标分别与管间具缘纹孔数量特征指标的逐步回归分析表明,导管侧壁附物纹孔丰富度2个指标,即导管外纹孔口附物频率与导管纹孔腔附物频率随纹孔口面积百分比的增大而增大,推测梣属植物附物纹孔丰富度与纹孔几何构造及数量特征有关。研究认为,附物纹孔在梣属植物稳定存在,是可界定梣属植物的木材解剖性状。