Aeromycological study in the Cathedral of Santiago de Compostela (Spain)

A study of airborne fungi was carried out in the architectural complex of the Cathedral of Santiago de Compostela (Spain) during 2002, by using viable volumetric sampling methods. This resulted in a total of 35 identified taxa, of which the most abundant were: Alternaria, Aspergillus, Cladosporium and Penicillium. Sampling was completed with data from the outdoor atmosphere and swab samples in specific places.In general there were no statistically significant indoor/outdoor differences and in both cases the highest CFU m-3 were obtained during the spring-summer. Similar relatively low numbers of the same fungi were likewise detected at different points in the Cathedral nave, while up to nearly 6500 CFU m-3 were recorded in the Corticela Chapel. The study of intradiurnal levels carried out in the Cathedral nave reveals greater abundance of fungal concentrations at 13:00 h, the moment of massive influx of visitors in the Cathedral, with 406 CFU m-3 compared to the 380 CFU m-3 sampled at 9:00 h and the 350 CFU m-3 at 21:00 h. The whole investigation is the first study of the atmospheric fungal content of the Cathedral of Santiago de Compostela.     

Biodeterioration of mural paintings in a rocky habitat: The Crypt of the Original Sin (Matera, Italy)

The biological colonization of mural paintings in rocky habitats is a widely recurring phenomenon and should be considered for restoration activities. In order to plan conservation treatment of the Crypt of the Original Sin (Matera, Italy), biodeterioration problems were analysed taking into account their impact on the substrate and their relationship with environmental factors. The mural paintings showed a phenomenology of alteration varying from brilliant green, dark green, brown, and black duff patinas with powdery aspect, to rosy discoloration. These phenomena were linked to different microbial colonizations by Cyanobacteria (Chlorogloea microcystoides, Chroococcus lithophilus, Gloeocapsa spp., Gloeothece rupestris, Pseudocapsa dubia) and green algae (Apatococcus lobatus, Chlorella vulgaris, Chlorococcum sp., Muriella terrestris). The rosy discoloration was connected to pigment production by Actinobacteria related to Rubrobacter radiotolerans. Grey-green patinas, limited to more ventilated areas, were caused by lichen growth (Dirina massiliensis f. sorediata). Vascular plants (Adiantum capillus-veneris) were also detected in wall areas affected by rising damp. To control the growth of microflora, biocide treatment and intervention to reduce humidity and sunlight exposure of mural paintings were suggested. To choose the correct biocide, different products were tested, evaluating their efficiency on Cyanobacteria and algae as well as possible effects on the calcarenite stone.     

Biodeterioration of asbestos cement (AC) pipe in drinking water distribution systems

Various types of microorganisms have been found to inhabit the inner surfaces of asbestos cement (AC) pipe and their activities can cause significant structural damage. They cause a patina to form on the inside surface of AC pipes as a distinctively continuous coating, commonly 2-5 mm in thickness and generally pigmented as yellow, orange, brown or black depending on the metallic cations that have been incorporated into the surface of biofilm (bioaccumulation). Four sublayers can be identified in the patina, from the outer sublayer that directly interacts with the conveyed drinking water to the inner sublayer that is in proximity of the intact cement matrix. The microbes in the outer sublayer are composed mainly of inactive biomass that separates the aerobic environment of the flowing water from the anaerobic conditions inside the patina. The bacteriological community structure shifts from mixed heterotrophic bacteria (HAB), iron-related bacteria (IRB) and slime-forming bacteria (SLYM) in the outer layer, to a more diverse community with IRB, acid-producing bacteria (APB) and SLYM and HAB in the middle sublayer, and further to the SLYM dominated in the inner sublayer. By directly interacting with cementitious materials, including generating organic acids, IRB and APB play important roles in the leaching of free lime and the dissolution of calcium (Ca)-bearing hydrated components of AC pipes, creating porous structure and reducing the pipe strength. Scanning electron microscopy with an energy dispersive X-ray has revealed that bacterial activity on the internal AC pipe wall had resulted in a significant loss of hydrated cement matrix, which can cause pipe failure when stresses imposed on the pipe exceed the remaining pipe strength.     

Live (Rose Bengal stained) and dead benthic foraminifera from the oxygen minimum zone of the Pakistan continental margin (Arabian Sea)

Live (Rose Bengal stained) and dead benthic foraminiferal communities (hard-shelled species only) from the Pakistan continental margin oxygen minimum zone (OMZ) have been studied in order to determine the relation between faunal composition and the oxygenation of bottom waters. Samples were taken from 136 m to 1870 m water depth during the intermonsoon season of 2003 (March–April). Live foraminiferal densities show a clear maximum in the first half centimetre of the sediment only few specimens are found down to 4 cm depth. The faunas exhibit a clear zonation across the Pakistan margin OMZ. Down to 500 m water depth, Uvigerina ex gr. U. semiornata and Bolivina aff. B. dilatata dominate the assemblages. These taxa are largely restricted to the upper cm of the sediment. They are adapted to the very low bottom-water oxygen values (≈ 0.1 ml/l in the OMZ core) and the extremely high input of organic carbon on the upper continental slope. The lower part of the OMZ is characterised by cosmopolitan faunas, containing also some taxa that in other areas have been described in deep infaunal microhabitats. The contrast between faunas typical for the upper part of the OMZ, and cosmopolitan faunas in the lower part of the OMZ, may be explained by a difference in the stability of dysoxic conditions over geological time periods. The core of the OMZ has been characterised by prolonged periods of stable, strongly dysoxic conditions. The lower part of the OMZ, on the contrary, has been much more variable over time-scales of 1000s and 10,000 years because of changes in surface productivity and a fluctuating intensity of NADW circulation. We suggest that, as a consequence, well-adapted, shallow infaunal taxa occupy the upper part of the OMZ, whereas in the lower part of the OMZ, cosmopolitan deep infaunal taxa have repeatedly colonised these more intermittent low oxygen environments.     

Aerobiological study of fungal spores from Palencia (Spain)

A study of the concentration of fungal spores has been carried out in the atmosphere of Palencia town (NW Spain) during 1992. The volumetric method of filtration has been used. Half of the daily filter sample has been cultivated in Czapecdox-agar or Sabouraud-agar for the identification of fungal colonies, and the other half has been examined by optical microscopy. Several colonies belonging to 26 genera have been identified. Deuteromycetes (54%) and Zigomycetes (28%) are assembled in four genera, and Bacteria and Actynomycetes (18%) in three genera. The greatest concentrations occur forAspergillus (23%),Mucor (25%), followed byPenicillium (16%). The greatest diversity and abundance of fungal spores are found in September–December. The viable colonies are more abundant in Czapedox-agar culture, whereas Bacteria were more frequently found in Sabouraud medium.     

Metabolic Characterization of cold active Pseudomonas, Arthrobacter, Bacillus, and Flavobacterium spp. from Western Himalayas

Himalayan soils undergo dramatic temporal changes in their microclimatic properties. The soil habitats in the high altitude cold habitats of Himalayas are little explored with respect to bacterial diversity and metabolic potentials of the bacterial species. Soil habitat in Western Himalayas is dominated by the genera of Pseudomonas, Arthrobacter, Bacillus, and Flavobacterium. Strains were found to be diverse in their metabolic potentials to utilize different carbon sources by growing them on media containing 114 different sole carbon sources. Bacillus sp. STL9 was supported by the lowest number (12.3%) of the carbon sources while growth was observed in 73.7% of the carbon sources tested for the Pseudomonas sp. SPS2. Carbohydrates appeared to be preferred carbon sources for these Himalayan isolates followed by amino acids and proteins. These microbes also produced various extra-cellular hydrolytic enzymes having biotechnological potentials, lipase being the one secreted by most strains (85.7%) followed by β-galactosidase (42.8%). Antibiotic resistance profiling for 85 different antibiotics has also been described.     

Arvicolidae (Rodentia) from the Pliocene of Tollo de Chiclana (Granada, SE Spain)

Several new fossiliferous Pliocene localities have been identified in the continental deposits of the area of Tollo de Chiclana (Guadix Basin, SE Spain), that have yielded a rich rodent and insectivore fauna. In this paper, we study the Arvicolidae from these localities. Remains adscribed to the genera Dolomys, Mimomys and Kislangia have been found, which are very interesting from a biostratigraphical point of view.     

Early Cambrian molluscs from Sierra de Córdoba (Spain)

Lower Cambrian helcionelloid molluscs are described from the Pedroche Formation in Sierra de Córdoba, southern Spain. The molluscan fauna occurs together with abundant and diverse Small Shelly Fossils (SSF) in limestone units and limestone nodules within terrigenous units. The molluscs are assigned to three new genera and six new species. Three species are previously known from North Siberia and one occurs in Australia, Altai-Sayan Fold Belt, Siberia, Central Asia, China and eastern Germany. The molluscs and other Small Shelly Fossils indicate close palaeogeographic links to Siberia and other continental blocks during the Early Cambrian.     

Examination of the Bacterial Biodiversity of Coastal Eroded Surface Soils from the Padza de Dapani (Mayotte Island)

To better understand microbial populations present in atypical soil environments, and to discern any relations between these environments and their bacterial communities, we examined the “Padza de Dapani” on the island of Mayotte off the east coast of Africa. This area is not a true (hot) desert, but resembles one in many places due to extensive soil erosion. We collected surface soil samples from five different sites of the Padza de Dapani in Mayotte. We examined bacterial biodiversity using pyrosequencing of PCR-amplified 16S V1–V3 rDNA sequences from total extracted DNA. Our results show that in the acidic (pH 4.6–6), oligotrophic (organic carbon; 0.1–0.7 g/kg of soil) and mineralized (Fe: 18 g/100 g; Al: 12 g/100 g) Dapani Padza soil samples, members of the Actinobacteria and Proteobacteria phyla dominated the bacterial communities, as was also observed in samples from Saudi Arabia hot desert sands.

Interestingly, members belonging to the genera Acinetobacter, Arthrobacter and Bacillus were also found to be very abundant in our samples. These were also seen in hot Asian deserts sand samples, such as those from the Gobi (Mongolia) and Taklamaken (China) deserts, thus possibly pointing to microbial populations characteristic of denuded soils.     

Human hyoid bones from the middle Pleistocene site of the Sima de los Huesos (Sierra de Atapuerca, Spain)

This study describes and compares two hyoid bones from the middle Pleistocene site of the Sima de los Huesos in the Sierra de Atapuerca (Spain). The Atapuerca SH hyoids are humanlike in both their morphology and dimensions, and they clearly differ from the hyoid bones of chimpanzees and Australopithecus afarensis. Their comparison with the Neandertal specimens Kebara 2 and SDR-034 makes it possible to begin to approach the question of temporal variation and sexual dimorphism in this bone in fossil humans. The results presented here show that the degree of metric and anatomical variation in the fossil sample was similar in magnitude and kind to living humans. Modern hyoid morphology was present by at least 530 kya and appears to represent a shared derived feature of the modern human and Neandertal evolutionary lineages inherited from their last common ancestor.     

Phylogenetic analysis of the composition of bacterial communities in human-exploited coastal environments from Mallorca Island (Spain)

The phylogenetic analysis of bacterial communities in environments receiving anthropogenic impact could help us to understand its effects and might be useful in the development of monitoring or management strategies. A study of the composition of 16S rDNA clone libraries prepared from bacterial communities in water samples from a marina and a beach on the coast of Mallorca (W. Mediterranean) was undertaken at two time points, corresponding to periods of maximum and minimum anthropogenic use of this area for nautical and recreational activities. Libraries generated from the marina were significantly different from those from the beach and a non-impacted, bay sample. In the marina, a predominance of sequence types was observed related to bacterioplankton from nutrient-enriched environments or typically associated with phytoplankton, such as certain phylotypes of the Roseobacter clade, OM60 clade and Bacteroidetes. Similar results were found in the summer beach library but not in the winter one, in which there was an increase in the number of clones from oligotrophic groups, in agreement with lower chlorophyll content and bacterial counts. Therefore, nutrient enrichment seemed to be an important driver of the composition of bacterial communities in sites receiving direct human impact. Interesting sequence types from the Cryomorphaceae and group agg58 (Bacteroidetes) were exclusively found in beach libraries, and the reasons for this distribution deserve further study. Clones related to putative hydrocarbon-degrading bacteria of the genus Acinetobacter were observed in the marina, in agreement with a certain degree of pollution at this site. Non-marine sequences belonging to the Actinobacteria predominated over marine groups in the summer library from the marina and, therefore, unusual communities might be transiently present in this enclosed environment. Overall, the composition of the bacterial communities in these environments agreed well with the defining characteristics of the environments sampled.     

中国鹅膏菌属(担子菌)的物种多样性

鹅膏菌属（Ａｍａｎｉｔａ）是一个近世界性广布的大属,全球已被描述而又被承认的有近５００种。在文献中,我国此属已记载约２００种。然而,许多种都是原初描述于欧洲或北美的种类。近来的研究表明,东亚的鹅膏菌独特且有其自身的分布范围。东亚的有些种虽与产于欧洲或北美的某些种相似,但仔细的野外观察,详尽的形态解剖学和分子进化生物学研究结果表明,东亚的鹅膏菌是独立的分类群。在欧洲,人们有采集著名食菌恺撒鹅膏菌的习     

Microflora and internal parasites of the digestive tract of Eurasian griffon vultures (Gyps fulvus) in Croatia

Faecal and vomit samples were collected from 12 griffon vultures (Gyps fulvus) in May 2002 and examined for bacteria, fungi and parasites. Bacteria present included Escherichia coli, Aeromonas salmonicidia, Proteus sp., Escherichia fergusonii, Providencia alcalifaciens, Micrococcus sp. and Streptococcus sp. Mycological examination revealed the presence of Candida sp., yeasts and in one case, Rhodotorula rubra. Strongyle eggs were found in several samples. In most faecal samples, ascarid eggs of Toxocara type were found. Tapeworm eggs of Moniezia type were present in one faecal sample. Both microbiologic and parasitic findings are most likely the result of the feeding habits of griffon vultures.     

Stature estimation from complete long bones in the Middle Pleistocene humans from the Sima de los Huesos, Sierra de Atapuerca (Spain)

Systematic excavations at the site of the Sima de los Huesos (SH) in the Sierra de Atapuerca (Burgos, Spain) have allowed us to reconstruct 27 complete long bones of the human species Homo heidelbergensis. The SH sample is used here, together with a sample of 39 complete Homo neanderthalensis long bones and 17 complete early Homo sapiens (Skhul/Qafzeh) long bones, to compare the stature of these three different human species. Stature is estimated for each bone using race- and sex-independent regression formulae, yielding an average stature for each bone within each taxon. The mean length of each long bone from SH is significantly greater (p < 0.05) than the corresponding mean values in the Neandertal sample. The stature has been calculated for male and female specimens separately, averaging both means to calculate a general mean. This general mean stature for the entire sample of long bones is 163.6 cm for the SH hominins, 160.6 cm for Neandertals and 177.4 cm for early modern humans. Despite some overlap in the ranges of variation, all mean values in the SH sample (whether considering isolated bones, the upper or lower limb, males or females or more complete individuals) are larger than those of Neandertals. Given the strong relationship between long bone length and stature, we conclude that SH hominins represent a slightly taller population or species than the Neandertals. However, compared with living European Mediterranean populations, neither the Sima de los Huesos hominins nor the Neandertals should be considered ‘short’ people. In fact, the average stature within the genus Homo seems to have changed little over the course of the last two million years, since the appearance of Homo ergaster in East Africa. It is only with the emergence of H. sapiens, whose earliest representatives were ‘very tall’, that a significant increase in stature can be documented.     

Susceptibility of Sitophilus zeamais (Motsch.) (Coleoptera: Curculionidae) and Prostephanus truncatus (Horn) (Coleoptera: Bostrichidae) to Entomopathogenic Fungi from Ethiopia

The efficacy of 13 isolates of entomopathogenic fungi belonging to Beauveria , Metarhizium or Paecilomyces spp. was assessed against Sitophilus zeamais (Coleoptera: Curculionidae) and Prostephanus truncatus (Coleoptera: Bostrichidae) using a total immersion bioassay technique in the laboratory. Fungi were applied at concentrations of 1 ×10 7 and 1 ×10 8 conidia mL -1 for P. truncatus and S. zeamais , respectively. All isolates tested were virulent to P. truncatus (98-100% mortality, and median survival time (MST) ranged from 2.85-4.05 days). Metarhizium anisopliae and B. bassiana were also virulent to S. zeamais (92-100% mortality, MST ranged from 3.58-6.28 days). The isolate of Paecilomyces sp. was found to be the least virulent against S. zeamais , causing only 26.32 ±4.29% mortality with MST of 10.38 ±0.29 days. P. truncatus proved more susceptible to the entomopathogenic fungi tested than S. zeamais . One M. anisopliae (PPRC-EE) and three B. bassiana isolates (PPRC-HH, PPRC-9609 and PPRC-9614) were selected for further study and dose-mortality relationships were assessed on S. zeamais . The tested concentrations ranged from 1 ×10 4 -1 ×10 7 conidia mL -1 . M. anisopliae (PPRC-EE) showed the lowest LC 50 (3.39 ×10 5 conidia mL -1 ) followed by B. bassiana PPRC-HH (2.04 ×10 6 conidia mL -1 ). PPRC-9609 and PPRC-9614 showed slight differences in LC 50 but not at LC 90 . The results revealed the higher potency of M. anisopliae as compared with the B. bassiana isolates tested. The study suggests that the use of entomopathogenic fungi may hold promise as an alternative method to control pests of stored-products in Ethiopia.     

Comparison of aerobic heterotrophic taxa isolated from four root domains of mature sugar beet (Beta vulgaris)

Abstract: The distribution of bacteria in the rhizosphere, rhizoplane, interior root tissues (core) and lower root (all tissues) of mature sugar beet roots ( Beta vulgaris ) was compared. Of 556 isolates, 102 species from 40 genera were identified by fatty acid methyl ester gas-chromatographic (FAME-GC) analysis. The ten most common genera ( Bacillus , 14%; Arthrobacter , 12%; Pseudomonas , 11%; Aureobacterium , 9%; Micrococcus , 6%; Xanthomonas , 5%; Alcaligenes , 4%; Flavobacterium , 3%; Agrobacterium , 3%; Microbacterium , 3%) accounted for 70% of isolates, and were found in each of three root domains (rhizosphere, rhizoplane and interior root tissues) on the two principal sampling occasions. Gram-positive strains were more abundant in the rhizosphere than the rhizoplane. Compared to the rhizoplane, rhizosphere bacterial communities were represented by a less diverse, more hierarchical distribution of species where twice as many isolates formed late developing colonies on isolation plates. Between October and January, the bacteria isolated from root interior tissues acquired a distinct change in taxonomic pattern, with decreased diversity and increased hierarchy. A bacterial continuum of similar taxa was observed which extended from the rhizosphere to interior root tissues.     

Fusulinoidean characterization of the uppermost Moscovian-Gzhelian (upper Pennsylvanian) synorogenic depositional sequences from northern Picos de Europa Unit (Spain)

Late Pennsylvanian succession of the Picos de Europa Unit (Cantabrian Mountains, NW Spain) constitutes one of the few exposed marine strata of this age in Western Europe. It consists of synorogenic deposits that accumulated in piggy-back basins developed during the latest stages of the Variscan orogeny. The 11 mappable 3rd, 4th–5th order depositional sequences that form the succession were subdivided in higher-order cycles (5th order) and grouped into two sequence sets. Fusulinoidean faunas have allowed dating of these strata (late Myachkovian-Gzhelian) and to characterize each depositional sequence. Sequence stratigraphy, coupled with sedimentological and paleontological analysis have enabled the reconstruction of a sea level curve that may shed light on Late Pennsylvanian global events and faunal migrations. These studies suggest potential correlations between late Moscovian cycles recognized both in the Cantabrian Mountains and in the Moscow Basin. Sudden appearances of early Dorogomilovian and early Gzhelian fusulinoideans could indicate migrations within the Paleotethys, probably favoured by global sea level rises and highstands.     

A tall-spined ornithopod dinosaur from the Early Cretaceous of Salas de los Infantes (Burgos, Spain)

A tall-spined ornithopod dinosaur from the Pinilla de los Moros Formation (Upper Hauterivian-Lower Barremian) of Salas de los Infantes (Burgos, Spain) is described. The material consists of seven associated axial remains, including five middle dorsal vertebrae, a fragmentary neural spine and a dorsal rib, from a single medium-sized individual. This material was previously referred to Iguanodon cf. fittoni. It is characterised by having a high dorsal neurapophysis that is approximately 4.5 times the height of the centrum. The elongation and vertical orientation of the dorsal neural spines allow it to be distinguished from other ornithopods from the Wealden of Europe, including Hypselospinus and Barilium from the Valanginian, and Iguanodon and Mantellisaurus from the Barremian-Aptian. The material is here referred to Iguanodontia indet. because it is so incomplete, but it is potentially a distinct taxon. Among the ornithopods, only Ouranosaurus and the hadrosaurid Hypacrosaurus possess higher dorsal neural spines.     

Screening of endophytic bacteria isolated from leaves of Sambung Nyawa [Gynura procumbens (Lour.) Merr.] for cytokinin-like compounds

Endophytic bacteria are harmless in most plant species; and known to boost the growth and development of the host plants probably by secreting growth hormones. The isolation, identification and screening of endophytic bacteria for the plant growth regulators like cytokinin are needed to get the leads for their applications in agriculture sector. We describe the isolation and identification of the bacterial endophytes from the leaves of Sambung Nyawa [Gynura procumbens (Lour.) Merr.] and their screening for cytokinin-like compounds. We isolated three endophytic bacteria from the leaves of G. procumbens collected from the forest research institute of Malaysia (FRIM). They were further identified using amplified 16S rRNA gene sequence based method of bacterial identification. The ethyl acetate extracts of the isolates-broth were analyzed using cucumber cotyledon greening bioassay (CCGB) to determine the presence of cytokinin-like compounds. Consequently, the bacterial putative endophytes were identified as Psuedomonas resinovorans, Paenibacillus polymaxa, and Acenitobacter calcoaceticus. Broth-extracts from two (Psuedomonas resinovorans and Paenibacillus polymaxa) of the three putative bacterial endophytes show the positive results in their screening for cytokinin-like compounds using CCGB. Thus, we hypothesize that the bacterial putative endophytes of G. procumbens that produce cytokinin-like compounds might have a role in the growth and development of G. procumbens. ABBREVIATIONS: CCGB - Cucumber cotyledon greening bioassay, rDNA - Ribosomal DNA, K12, BAP - 6-Benzylaminopurine, Db1, MSA - Multiple sequence alignment. 8081.