Comparison of the effects of concentration, pH and anion species on astringency and sourness of organic acids

The separate effects of concentration, pH and anion species on intensity of sourness and astringency of organic acids were evaluated. Judges rated sourness and astringency intensity of lactic, malic, tartaric and citric acid solutions at three levels of constant pH varying in normality and at three levels of constant concentration varying in pH. To assess the comparative sourness and astringency of the organic acid anions of study, binary acid solutions matched in pH and titratable acidity were also rated. As pH was decreased in equinormal solutions, both sourness and astringency increased significantly (P < 0.001). By contrast, as the normality of the equi-pH solutions was increased, only sourness demonstrated significant increases (P < 0.001) while astringency remained constant or decreased slightly. At the lowest normality tested, all solutions were more astringent than sour (P < 0.05). Although lactic acid was found to be significantly more sour than citric acid (P < 0.05), no other sourness or astringency differences among the organic acid anions were noted. This study demonstrates for the first time that astringency elicited by acids is a function of pH and not concentration or anion species, and confirms that sourness is independently influenced by concentration, pH and anion species of the acid.      

EVOLUTION OF SCAPULA SIZE AND SHAPE IN DIDELPHID MARSUPIALS (DIDELPHIMORPHIA: DIDELPHIDAE)

The New World family Didelphidae, the basal lineage within marsupials, is commonly viewed as morphologically conservative, yet includes aquatic, terrestrial, scansorial, and arboreal species. Here, I quantitatively estimated the existing variability in size and shape of the Didelphidae scapula (1076 specimens from 56 species) using geometric morphometrics, and compared size and shape differences to evolutionary and ecologic distances. I found considerable variation in the scapula morphology, most of it related to size differences between species. This results in morphologic divergence between different locomotor habits in larger species (resulting from increased mechanical loads), but most smaller species present similarly shaped scapulae. The only exceptions are the water opossum and the short-tailed opossums, and the functional explanations for these differences remain unclear. Scapula size and shape were mapped onto a molecular phylogeny for 32 selected taxa and ancestral size and shapes were reconstructed using squared-changed parsimony. Results indicate that the Didelphidae evolved from a medium- to small-sized ancestor with a generalized scapula, slightly more similar to arboreal ones, but strikingly different from big-bodied present arboreal species, suggesting that the ancestral Didelphidae was a small scansorial animal with no particular adaptations for arboreal or terrestrial habits, and these specializations evolved only in larger-bodied clades.     

Rapid divergence of microsatellite abundance among species of Drosophila

Among major taxonomic groups, microsatellites exhibit considerable variation in composition and allele length, but they also show considerable conservation within many major groups. This variation may be explained by slow microsatellite evolution so that all species within a group have similar patterns of variation, or by taxon-specific mutational or selective constraints. Unfortunately, comparing microsatellites across species and studies can be problematic because of biases that may exist among different isolation and analysis protocols. We present microsatellite data from five Drosophila species in the Drosophila subgenus: D. arizonae, D. mojavensis, and D. pachea (three cactophilic species), and D. neotestacea and D. recens (two mycophagous species), all isolated at the same time using identical protocols. For each species, we compared the relative abundance of motifs, the distribution of repeat size, and the average number of repeats. Dimers were the most abundant microsatellites for each species. However, we found considerable variation in the relative abundance of motif size classes among species, even between sister taxa. Frequency differences among motifs within size classes for the three cactophilic species, but not the two mycophagous species, are consistent with other studied Drosophila. Frequency distributions of repeat number, as well as mean size, show significant differences among motif size classes but not across species. Sizes of microsatellites in these five species are consistent with D. virilis, another species in the subgenus Drosophila, but they have consistently higher means than in D. melanogaster, in the subgenus Sophophora. These results confirm that many aspects of microsatellite variation evolve quickly but also are subject to taxon-specific constraints. In addition, the nature of microsatellite evolution is dependent on temporal and taxonomic scales, and some variation is conserved across broad taxonomic levels despite relatively high rates of mutation for these loci.     

Differences in environmental predictability underlie divergent competitive abilities in three congeneric hydroids

Species in which individuals experience predictable and uniform environments should be most finely adapted to their environment. Many hydrozoan species in the genus Hydractinia simultaneously occupy similar microhabitats (gastropod shells inhabited by hermit crabs) but experience considerable differences in their immediate environment (size and species of shells and hosts). In the present study, hydroid species experience differences in environmental predictability and traits that mediate competitive ability (growth form and growth rate). The inferred competitive ability was directly proportional to the extent to which the gastropod environment promotes interactions between small, juvenile colonies, which always end in competitive elimination. Extensive intraspecific variation in competitive ability was explained primarily by crab host species or site. Dense host populations impose more severe disturbance regimes that favour competitively inferior, but disturbance-resistant, phenotypes. Interplay between different types of variation (gastropods and hermit crabs) provides a possible mechanism for the maintenance of intraspecific growth form variation.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 322–338.     

Tannins of herbaceous leguminosae

The tannins of the leaves of five of the relatively few species of herbaceous Leguminosae which contain them, consist of leucocyanidin and leucodelphinidin. In most of the species (sainfoin, Onobrychis viciaefolia Scop. especially) the tannins are difficult to extract from the leaves. Methods, based on haemanalysis, have therefore been developed for determining the tannic acid equivalent and the relative astringency in leaf tissue finely divided by milling and sieving. The particular case of sainfoin, with its bearing on bloat in cattle, is considered in detail.     

Polar lipids in phototrophic bacteria of the Rhodospirillaceae and Chromatiaceae families.

The polar lipids of photosynthetic purple bacteria of the genera Chromatium, Thiocapsa, Thiocystis, Ectothiorhodospira, Rhodopseudomonas, Rhodospirillum, and Rhodomicrobium were analyzed. Characteristic compositions of the polar lipids were found for most of the Rhodospirillaceae and Chromatiaceae species. Phosphatidylethanolamine, phosphatidylglycerol, and cardiolipin were the major phospholipids in most species. Phosphatidylcholine was present as a major component in all species of the genus Ectothiorhodospira, but was not detected in the remaining Chromatiaceae. It was also present in most of the Rhodospirillaceae species. No glycolipids were found in any of the Ectothiorhodospira species. In the Rhodospirillaceae, the glycolipids mono- and digalactosyl diglycerides were generally absent. Sulfoquinovosyl diglyceride was present in significant amounts in at least three species of the Rhodospirillaceae and may have been present in most of them, but only in traces. All of the Chromatiaceae species contained several glycolipids, one of which was similar to monogalactosyl diglyceride. Ornithine lipids were found in large amounts in most Rhodospirillaceae, but were absent in Ectothiorhodospira and in the other Chromatiaceae. The species examined could be divided into three groups on the basis of their lipid composition: (i) the genus Ectothiorhodospira; (ii) the remaining Chromatiaceae; and (iii) the Rhodospirillaceae. The data presented are compared with those available in the literature, and differences from other phototrophic organisms are discussed.     

Some karyotype diversity in Columnea L. sensu lato (Gesneriaceae)

Mitotic karyotypes of species of Columnea L. sensu lato (Gesneriaceae) show morphological but not numerical differences in most cases. The differences are more exaggerated in continental species than in Jamaican ones. Changes in karyotype morphology have accompanied speciation, but the present limited karyotype data show no marked correlation with the geography or taxonomy of the species.     

DNA条形码在黄精属药用植物鉴定与遗传多样性分析中的应用

黄精属(Polygonatum)的许多物种具有重要的药用价值,但目前缺乏能够准确、高效地鉴定黄精属药用植物的DNA条形码。本研究通过对ITS、trnK-matK、rbcL、psbA-trnH和psbK-psbI序列进行扩增和测序,并从ITS序列中提取ITS2序列,共获得黄精属7个药用物种23份样品的138条序列。进一步比较6个DNA条形码对黄精属药用植物的鉴定效率,并验证所筛选条形码的可靠性。结果显示：trnK-matK的种内和种间变异重合少且有较明显的条形码间隙,其他5个序列的种内和种间变异重合多且无条形码间隙;BLAST结果表明trnK-matK的鉴定效率最高(85.7%),系统发育树显示trnK-matK的鉴定能力最强,能将全部12个多花黄精样品聚在一支,并能区分黄精、滇黄精、玉竹、点花黄精和湖北黄精;AMOVA分析结果揭示trnK-matK的群体遗传分化指数(F_st)最高,适用于区分黄精属物种间差异。因此,trnK-matK最适用于黄精属药用植物的分子鉴定。     

Ethnobotanical knowledge in rural communities of Cordoba (Argentina): the importance of cultural and biogeographical factors

Background

Italy and Tunisia (Africa for the Romans), facing each other on the opposite sides of the Mediterranean Sea, have been historically linked since the ancient times. Over the centuries both countries were mutually dominated so the vestiges and traces of a mutual influence are still present. The aim of the present study is to conduct a comparative analysis of the medicinal species present in the respective Floras in order to explore potential analogies and differences in popular phytotherapy that have come out from those reciprocal exchanges having taken place over the centuries

Methods

The comparative analysis based on the respective floras of both countries takes into consideration the bulk of medicinal species mutually present in Italy and Tunisia, but it focuses on the species growing in areas which are similar in climate. The medicinal uses of these species are considered in accordance with the ethnobotanical literature.

Results

A list of 153 medicinal species belonging to 60 families, present in both floras and used in traditional medicine, was drawn. A considerable convergence in therapeutic uses of many species emerged from these data.

Conclusion

This comparative analysis strengthens the firm belief that ethno-botanical findings represent not only an important shared heritage, developed over the centuries, but also a considerable mass of data that should be exploited in order to provide new and useful knowledge.     

Utilization of evergreen and decidous oaks by the Californian oak moth Phryganidia californica

Summary The deciduous oak Quercus lobata was a better quality food source than the evergreen oak Q. agrifolia for the California oak moth Phryganidia californica: it supported higher growth rates, produced higher fecundity and survivorship, and higher efficiency of conversion of ingested food (ECI), efficiency of conversion of digested food (ECD) and efficiency of nitrogen utilization (NUE). Total polyphenols and astringency were similar in both oak speices, whereas water content was lower and leaf specific weight higher in Q agrifolia than in Q lobata. Nitrogen was higher in new leaves of Q agrifolia but higher in mature leaves of Q. lobata. Contrary to most other studies, total polyphenols and astringency were higher in new than in mature leaves. These results confirmed my hypothesis that the differences in leaf quality associated with the evergreen or deciduous life form would translate into food of differing quality for herbivores.     

Haemanalysis of tannins: The concept of relative astringency

The astringency of tannins, that is their efficiency as precipitants of proteins, is determined by their reaction with the proteins of haemolysed blood and calorimetric determination of residual haemoglobin. The method is accurate and sensitive because of the narrow range of concentration of tannin between that required to initiate precipitation (the threshold concentration) and that for complete precipitation. ‘Relative astringency’ (RA) is the ratio of the concentration of the tannic acid to that of the tannin which effects the same degree of precipitation. The RA of certain esters of hexahydroxydiphenic acid and of certain procyanidins of known constitution has been determined and the results applied to the ellagitannins and/or leucoanthocyanins present in species of Shorea, Geranium and other plants. The homology of each of these classes of tannins is discussed in the light of the results.     

New products of defense secretion in south east Asian whip scorpions (Arachnida: Uropygi: Thelyphonida)

Secretion products from the opisthosomal defense gland of south east Asian whip scorpions were identified for the first time by gas-chromatography and mass-spectrometry. Specimens of the genera Hypoctonus, Typopeltis and Ginosigma were tested. While some ingredients are present in large concentrations, others are possibly only side products and may be synthesized more incidentally. For this reason no important functional role is attributed to them. There are considerable individual differences concerning the concentrations of various ingredients. While the secretion products of most species of the genus Typopeltis--similar to Mastigoproctus--are characterized by acetic and octanoic acid in large concentrations, the secretion product of Hypoctonus siamensis provides octanoic acid only in a very low concentration but it is characterized by hexyl acetate.     

Genetic characterization of the Psilotrema (Digenea: Psilostomatidae) genus by partial 28S ribosomal DNA sequences

In the present study, we successfully amplified the 28S ribosomal DNA of 3 species of the Psilotrema genus (Psilotrema oschmarini Besprozvannykh, 2007, P. acutirostris Oschmarin, 1963 and P. simillimum Muhling, 1989) from the Russian Far East. The genetic divergence between these species was estimated, and the phylogenetic relationships of the Psilotrema genus and the Psilostomatidae family were inferred. The resulting data support the independent taxonomical status of P. oschmarini as a valid species in the Russian Far East. In spite of the considerable morphological differences between P. simillimum and P. acutirostris, these species are genetically very close to each other. Genetic distances, calculated from the pairwise comparison of two obtained clusters using transversions, show that Psilostomatidae is the most divergent family. Phylogenetic analysis revealed two clusters, which corresponds to family Psilostomatidae (basal cluster) and other Echinostomatoidea species.     

Dynamics of free-living and plant-parasitic nematodes on vegetables in Dhapa municipal waste of Kolkata,India

We investigated areas at the eastern fringe of Kolkata, Dhapa–a land filled with Municipal Solid Waste (MSW) land of West Bengal (India) for exploring nematode species diversity, abundance and dynamic at three sites practising different vegetable-based cropping sequences. The area sampled at monthly interval and the soil and root populations estimated at laboratory. The plant-parasitic nematode (PPN) species and free-living group (saprozoics) were estimated from soil. No differences in the diversity of nematode species and feeding groups among the sites in the MSW land were found but considerable variations in abundance and dynamics of PPNs were noted. All three sites at MSW, total PPNs outnumbered free-living nematodes in most of the samples but mononchids were less abundant. Saprozoic nematode index (SNI) was determined; SNI value was low (0.33–0.40) in this organic rich production system.     

EVALUATION OF BITTERNESS AND ASTRINGENCY OF (+)-CATECHIN AND (-)-EPICATECHIN IN RED WINE AND IN MODEL SOLUTION

Two stereoisomeric phenolic compounds, (+)-catechin and (-)-epicatechin, were rated for perceived intensity of oral astringency and bitterness by trained judges using the scalar method. Mouth drying and mouth roughening were also assessed, since they are often associated with astringency. Amounts of 375, 750 and 1500 mg/L of each compound were tasted in red wine, and in a model system, similar in composition to a dry table wine. Preliminary tests showed that these concentrations were above the threshold level but within the range found in wine. A control sample (model solution or wine without the addition of the above phenolic compounds) was also evaluated. The results showed that the two compounds were both bitter and astringent. The high (-)-epicatechin concentration was significantly more bitter and astringent than the equal concentration of (+)-catechin in the model solution. Mouth drying and roughening ratings showed a similar increasing pattern with the ratings of astringency particularly at the higher concentrations. However, these attributes were rated differently from astringency suggesting that although they contribute to astringency, they are not subsumed by it.     

Large mammalian herbivores and woody plant species diversity in Zimbabwe

Study sites from various tree savannas and miombo woodland with adjacentareas with different herbivore species (game and cattle) and stocking rates wereselected from around Zimbabwe. Using the fence-lines separating the adjacentareas, 60 m² plots were placed on both sides of thefence at 18 randomly chosen positions. The identity and number of plants of eachwoody species were recorded in paired 60 m² plots. Therewere no significant differences in the woody species richness between pairedplots for any of the fence-line contrasts. For only two of the fence-linecontrasts were there significant differences (P < 0.05)in the relative abundance of woody species. For the first fence-line contrast,the stocking rates were the same, but the herbivore species present weredifferent, while for the second fence-line contrast, the numbers of herbivorespecies present were the same, but the stocking rates differed. Even thoughthere were no differences in the numbers of woody plant species present, therewere differences in the woody plant species and the numbers of plants of eachspecies: the second most common species was different for three fence-linecontrasts and the third most common species was different for four fence-linecontrasts.     

Comparison of the time budgets and circadian patterns of maintenance activities in sheep, cattle and horses grouped together

The distribution of Merino sheep, North Devon cattle and Thoroughbred horses when grazing and resting, and distribution of their faeces, were studied in a 15-ha paddock over two winters and one summer. Overall, the distributions of grazing, and of day and night resting sites were different for each species, as was the distribution of their feaces over the paddock. Within a day, considerable overlap occurred in the use of the paddock for grazing, but use of a particular area by two or more species usually occurred at different times of the day.The differences in use of space are attributed in part to differences in the species-responses to heat and cold. Spatial separation of the species at most times may be necessary if each species is to maintain social cohesion.     

Astringent Subqualities in Acids

Astringency, astringent subqualities (drying, roughing and puckering)and sourness were compared among six acids: hydrochloric, lactic,citric, acetic, fumaric and malic acids. The attribute profilesof organic acids were similar to each other but different fromhydrochloric acid, the only inorganic acid, which was the mostastringent and the least sour. In a second experiment, two inorganicacids (hydrochloric and phosphoric) and two organic acids (citricand malic) were tested at three concentration levels. At approximatelyequal levels of overall sensory impact, the inorganic acidswere alike in astringency and sourness, receiving higher ratingsfor roughing and drying, and lower ratings for sourness thanthe organic acids. Interactions with concentration (differencesin psychophysical functions) for the subquality of drying werenoted, in addition to the differences in the astringent subqualitiesof roughing and drying seen across acids in both experiments.The higher level of astringency for inorganic acids suggeststhat the current model for tannin binding to salivary proteinsas an explanation of astringency needs to be extended to includea direct pH-dependent effect. Chem. Senses 20: 593–600,1995     

Comparative morphology of the axial complex and interdependence of internal organ systems in sea urchins (Echinodermata: Echinoidea)

Background

The axial complex of echinoderms (Echinodermata) is composed of various primary and secondary body cavities that interact with each other. In sea urchins (Echinoidea), structural differences of the axial complex in "regular" and irregular species have been observed, but the reasons underlying these differences are not fully understood. In addition, a better knowledge of axial complex diversity could not only be useful for phylogenetic inferences, but improve also an understanding of the function of this enigmatic structure.

Results

We therefore analyzed numerous species of almost all sea urchin orders by magnetic resonance imaging, dissection, histology, and transmission electron microscopy and compared the results with findings from published studies spanning almost two centuries. These combined analyses demonstrate that the axial complex is present in all sea urchin orders and has remained structurally conserved for a long time, at least in the "regular" species. Within the Irregularia, a considerable morphological variation of the axial complex can be observed with gradual changes in topography, size, and internal architecture. These modifications are related to the growing size of the gastric caecum as well as to the rearrangement of the morphology of the digestive tract as a whole.

Conclusion

The structurally most divergent axial complex can be observed in the highly derived Atelostomata in which the reorganization of the digestive tract is most pronounced. Our findings demonstrate a structural interdependence of various internal organs, including digestive tract, mesenteries, and the axial complex.     

Analysis of SSR dynamics in chloroplast genomes of Brassicaceae family

Simple sequence repeats (SSRs) are present abundantly in most eukaryotic genomes. They affect several cellular processes like chromatin organization, regulation of gene activity, DNA repair, DNA recombination, etc. Though considerable data exists on using nuclear SSRs to infer phylogenetic relationships, the potential of chloroplast microsatellites (cpSSR), in this regard, remains largely unexplored. In the present study we probe various nucleotide repeat motifs (NRMs) / types of SSRs present in chloroplast genomes (cpDNA) of 12 species belonging to Brassicaceae family. NRMs show a non-random distribution in coding and non-coding compartments of cpDNA. As expected, trinucleotide repeats are more common in coding regions while other repeat motifs are prominent in non-coding DNA. Total numbers of SSRs in coding region show little variation between species while considerable variation is exhibited by SSRs in non-coding regions. Finally, we have designed universal primers that yield polymorphic amplicons from all 12 species. Our analysis also suggests that amplicon length polymorphism shows no significant relationship with sequence based phylogeny of SSRs in cpDNA of Brassicaceae family.