蕈菌核糖核酸酶蛋白和肽的研究进展

蕈菌核糖核酸酶蛋白和肽是蕈菌中一类重要的功能性成分,其研究结果有助于人们进一步了解蕈菌的生物学功能。文中综述了不同种蕈菌核糖核酸酶蛋白和肽的分离、纯化学方面研究进展,并讨论了它们的生理生化性质、活性、对底物的特异性、作用机制及应用前景等。     

A Semiquantitative Method for Enumerating and Observing Parasites and Predators of Soil Nematodes

A laboratory method was developed to count and observe antagonists of soil nematodes and simulate their relationships in the soil. A 10- to 25-cc soil sample is suspended in water and washed through a series of small standard sieves. Residues are washed into a small beaker and collected on a 24-mm filter paper disk in a filter holder under vacuum. The disk is placed on corn meal agar in a petri dish. Microfauna and flora present in the sample colonize the organic matter on the disk and move onto and into the agar where they can be observed easily. Distinct successions of organisms usually occur and within 6-18 days or more, parasites and predators of nematodes are often abundant, especially nematode-trapping fungi. Counting predation events and parasitized nematodes in replicate dishes after specific incubation periods allows quantitative comparisons between soil samples. The method has distinct advantages over others for enumerating organisms which attack nematodes.     

Do Larval Damselflies make Adaptive Choices When Exposed to Both Parasites and Predators?

The importance of multiple enemies from different trophic levels on investment in defence by prey has, with some exceptions, received little attention. Some defences may make the victim more susceptible to other enemies; this latter situation applies to predators and parasites of larval damselflies. Baker and Smith [Oecologia 109 (1997) 622) showed that larval damselflies were as active in the presence of both mites and fish as they were when only mites were present, an apparently maladaptive behaviour that results in higher fish predation. In this paper, we further examine this maladaptive behavioural response to multiple enemies (fish predators and mite parasites) and test whether their defence responses are a result of the order in which they experience the parasite or predator, and/or if behavioural ‘personalities’ exist, such that some individuals show anti‐predator behaviours and other show anti‐parasite behaviours. Order of experience did not affect the four main behaviours (groom, crawl, turn and swim) exhibited when larval damselflies were simultaneously exposed to fish and mites. Grooming levels increased in response to mites, decreased in response to fish and when exposed to both mites and fish were similar to when they were exposed to mites alone. Duration of the other three behaviours was lower in the presence of both mites and fish. The crawling ‘personalities’ were evident. The apparently maladaptive response of high grooming levels in the presence of mites and fish is not a result of order of experience or ‘personalities’. It may be a result of relatively high encounter rates with mite parasites, compared with the encounter rates with fish. Lower encounter rates can result in diminishing investment in defence against an enemy.     

The Behavioral Response of Larval Amphibians (Ranidae) to Threats from Predators and Parasites

Organisms are exposed to strong selective pressures from several sources, including predators and pathogens. Response to such interacting selective pressures may vary among species that differ in life history and ecology in predictable ways. We consider the impact of multiple enemies (fish predators and trematode parasites) on the behavior of larvae of three anuran species (Lithobates ( = Rana) sylvaticus, L. clamitans and L. catesbeianus). We show that the three ranid species differ in response to the trade-off imposed by the simultaneous presence of fish predators and trematode parasites in the environment. Two more permanent pond breeders (L. clamitans and L. catesbeianus), which commonly encounter parasites and fish, increased activity when in the combined presence of parasites and a fish predator, resulting in a relatively lower parasite encystment rate. In contrast, the temporary pond breeder (L. sylvaticus), which does not commonly encounter fish in the wild, decreased activity in the combined presence of a fish predator and parasites similar to when only the predator was present. For L. sylvaticus, this suggests that the presence of an unknown predator poses a greater threat than parasites. Further, the presence of fish along with parasites increased the susceptibility of both L. sylvaticus and L. clamitans to trematode infection, whereas parasite infection in L. catesbeianus was unaffected by the presence of fish. Unpalatability to fish may allow some species to respond more freely to attacking parasites in the presence of fish. The results from this study highlight the importance of considering multiple selective pressures faced by organisms and how this shapes their behavior.     

寄生虫热激蛋白的研究进展

热激蛋白(Heat shock proteins,HSPs)是所有原核生物和真核生物在发育过程中,或为适应不同环境中合成的一组起关键作用的蛋白质家族.为全面了解寄生虫热激蛋白的研究情况,介绍了熟激蛋白的发现、功能、分类及寄生虫(原虫、线虫、吸虫)热激蛋白(HSP70,HSP90,HSP60,sHSP)的研究进展,并对寄生虫热激蛋白的研究意义作了探讨.     

Predators select against high growth rates and risk-taking behaviour in domestic trout populations

Domesticated (farm) salmonid fishes display an increased willingness to accept risk while foraging, and achieve high growth rates not observed in nature. Theory predicts that elevated growth rates in domestic salmonids will result in greater risk-taking to access abundant food, but low survival in the presence of predators. In replicated whole-lake experiments, we observed that domestic trout (selected for high growth rates) took greater risks while foraging and grew faster than a wild strain. However, survival consequences for greater growth rates depended upon the predation environment. Domestic trout experienced greater survival when risk was low, but lower survival when risk was high. This suggests that animals with high intrinsic growth rates are selected against in populations with abundant predators, explaining the absence of such phenotypes in nature. This is, to our knowledge, the first large-scale field experiment to directly test this theory and simultaneously quantify the initial invasibility of domestic salmonid strains that escape into the wild from aquaculture operations, and the ecological conditions affecting their survival.     

Identifying Novel Cell Cycle Proteins in Apicomplexa Parasites through Co-Expression Decision Analysis

Hypothetical proteins comprise roughly half of the predicted gene complement of Toxoplasma gondii and Plasmodium falciparum and represent the largest class of uniquely functioning proteins in these parasites. Following the idea that functional relationships can be informed by the timing of gene expression, we devised a strategy to identify the core set of apicomplexan cell division cycling genes with important roles in parasite division, which includes many uncharacterized proteins. We assembled an expanded list of orthologs from the T. gondii and P. falciparum genome sequences (2781 putative orthologs), compared their mRNA profiles during synchronous replication, and sorted the resulting set of dual cell cycle regulated orthologs (744 total) into protein pairs conserved across many eukaryotic families versus those unique to the Apicomplexa. The analysis identified more than 100 ortholog gene pairs with unknown function in T. gondii and P. falciparum that displayed co-conserved mRNA abundance, dynamics of cyclical expression and similar peak timing that spanned the complete division cycle in each parasite. The unknown cyclical mRNAs encoded a diverse set of proteins with a wide range of mass and showed a remarkable conservation in the internal organization of ordered versus disordered structural domains. A representative sample of cyclical unknown genes (16 total) was epitope tagged in T. gondii tachyzoites yielding the discovery of new protein constituents of the parasite inner membrane complex, key mitotic structures and invasion organelles. These results demonstrate the utility of using gene expression timing and dynamic profile to identify proteins with unique roles in Apicomplexa biology.     

The Role of TIR-NBS and TIR-X Proteins in Plant Basal Defense Responses

Toll/interleukin receptor (TIR) domain-containing proteins encoded in the Arabidopsis (Arabidopsis thaliana) genome include the TIR-nucleotide binding site (TN) and TIR-unknown site/domain (TX) families. We investigated the function of these proteins. Transient overexpression of five TX and TN genes in tobacco (Nicotiana benthamiana) induced chlorosis. This induced chlorosis was dependent on ENHANCED DISEASE RESISTANCE1, a dependency conserved in both tobacco and Arabidopsis. Stable overexpression transgenic lines of TX and TN genes in Arabidopsis produced a variety of phenotypes associated with basal innate immune responses; these were correlated with elevated levels of salicylic acid. The TN protein AtTN10 interacted with the chloroplastic protein phosphoglycerate dehydrogenase in a yeast (Saccharomyces cerevisiae) two-hybrid screen; other TX and TN proteins interacted with nucleotide binding-leucine-rich repeat proteins and effector proteins, suggesting that TN proteins might act in guard complexes monitoring pathogen effectors.Innate immunity is a primary defense mechanism in plants that functions to protect against a variety of biotic stresses (Eitas and Dangl, 2010). The plant basal immune system comprises pattern or pathogen recognition receptors that can recognize a variety of plant pathogens by identifying specific pathogen-associated molecular patterns (PAMPs; Tsuda and Katagiri, 2010). This recognition of PAMPs by plant pattern recognition receptors triggers PAMP-triggered immunity or plant basal immunity (Jones and Dangl, 2006; Zipfel, 2008). Well-known PAMPs or microbe-associated molecular patterns recognized by plants include bacterial flagellin, cold shock proteins, and elongation factor Tu. To suppress PAMP-triggered immunity, plant pathogens secrete an array of virulence factors such as type III effector proteins, while plant resistance (R) proteins function to recognize the effector molecules (Römer et al., 2009; Lewis et al., 2010; Tsuda and Katagiri, 2010; Zhang et al., 2012). Specific recognition of a pathogen effector by a plant R protein triggers a second type of immune response called effector-triggered immunity, resulting in an incompatible reaction (Qi et al., 2011; Sohn et al., 2012; Tahir et al., 2012).The most commonly known plant R proteins are the nucleotide-binding (NB) site Leucine-rich repeat (LRR) proteins that plants use to detect effector proteins. The NB is often called NB-ARC because of sequence similarities to the human apoptotic protease-activating factor APAF1 and Caenorhabditis elegans homolog CELL DEATH PROTEIN4 (Lukasik and Takken, 2009). Plant NB-LRR proteins often also have, at the N terminus, a Toll/Interleukin-1 receptor (TIR) or coiled coil (CC) domain (Meyers et al., 2003). In animal TIR proteins, this domain is more commonly located at the C terminus and is linked by a transmembrane domain to an N-terminal LRR domain (Torto et al., 2002). In Drosophila spp. and other microbes, a TIR domain has been shown to play an important role in the activation of antifungal immune responses (Jenkins and Mansell, 2010). Toll-like receptors (TLRs) perform an integral role in the activation of antimicrobial responses in many animals (Radhakrishnan and Splitter, 2010).In plants, two additional TIR-containing protein families, TIR-NB site (TN) and TIR-unknown/random (TX), were identified, which are distinct from the longer TIR-NB-LRR (TNL) R protein homologs (Meyers et al., 2002). TN proteins contain TIR and NBS domains but lack LRRs, while TX proteins lack both NBS and LRR domains, yet often have a small and variable C-terminal domain (Meyers et al., 2002). In the Arabidopsis (Arabidopsis thaliana) ecotype Columbia (Col-0) genome, there are 30 TX genes and 21 TN genes (Meyers et al., 2003). The crystal structure of a TIR domain from an Arabidopsis TN protein (At1g72930/{"type":"entrez-protein","attrs":{"text":"NP_177436","term_id":"15218629","term_text":"NP_177436"}}NP_177436) contains a compact globular fold resembling the mammalian (TLR1 and MYELOID DIFFERENTIATION PRIMARY RESPONSE GENE88 [MYD88]) and bacterial TIR domain proteins (Chan et al., 2010). Although plant TIR domains share less than 20% sequence identity with the human TLR domains, the structures of the TIR domain in plants, mammalian TLRs, and bacterial TIR domain proteins have strong similarity (Chan et al., 2010).A high proportion of TX and TN genes were previously reported to be in complex clusters with TNL genes; these clusters were found to be duplicated to multiple locations in the genome (Meyers et al., 2002). The existence of genetically linked pairs or sets of genes such as RESISTANCE TO PERONOSPORA PARASITICA2A (RPP2A)-RPP2B, RESISTANCE TO PSEUDOMONAS SYRINGAE1 (RPS1)-RPS4, LEAF RUST RESISTANCE GENE10 (LR10)-RESISTANCE GENE ANALOGUE2 (RGA2), RICE BLAST RESISTANCE GENE AT PIK LOCUS1 (PIKM-1)-TS-PIKM2-TS, and RICE BLAST RESISTANCE GENE AT PI LOCUS1 (PI5-1)-PI5-2 in the genomes and their role in disease resistance suggests that these linked genes are required to effect a defense response in plants (Eitas and Dangl, 2010). The genomic pairing of the TNL genes with TX or TN genes suggests a role of the tightly linked TN protein in the function of its cognate TNL protein or proteins (and vice versa).The specific direct or indirect interaction between an R gene and a corresponding avirulence (Avr) gene in the characterized pairs of interaction resulted in an immune response in the form of localized programmed cell death, called the hypersensitive response (HR; Burch-Smith et al., 2007; Caplan et al., 2008). The recognition of avirulence proteins from pathogens by the cognate R proteins induces a cascade of changes that increases the levels of salicylic acid (SA), jasmonic acid (JA), phenyl ammonium lyase, and systemin (Liu et al., 2010). The production of several of these biochemical signals is known to trigger multiple convergent ‘R’-gene signaling pathways, leading to programmed cell death and further changes in gene expression patterns (Vlot et al., 2008a, 2008b). Structure function analysis of Arabidopsis R proteins RPS4 (Zhang et al., 2004) and RPP1A (Michael Weaver et al., 2006) have shown that TIR and NBS domains of the proteins without the LRR domain (TNL truncations) could be sufficient to induce HR. Studies using overexpression of plant R genes (particularly the truncated TNL genes) suggest that the TIR and NBS domains by themselves might be sufficient to induce HR and to initiate plant defense responses (Michael Weaver et al., 2006; Swiderski et al., 2009).In this study, we present experimental and computational data that are collectively consistent with a role for Arabidopsis TX and TN proteins in plant defenses. For example, the ability of the TX and TN genes to induce HR responses upon transient expression is dependent on ENHANCED DISEASE RESISTANCE1 (EDS1). This EDS1 dependency in induced HR was demonstrated in both tobacco (Nicotiana benthamiana) and in Arabidopsis. Stable transgenic overexpression in Arabidopsis of TX and TN genes resulted in a variety of phenotypes involved with basal innate immune responses that are dependent on SA. We also demonstrated the interaction of TX and TN proteins with plant pathogenic elicitor proteins and other plant signal transduction proteins.     

Characterization of Peanut Germin-Like Proteins,AhGLPs in Plant Development and Defense

Background

Germin-like superfamily members are ubiquitously expressed in various plant species and play important roles in plant development and defense. Although several GLPs have been identified in peanut (Arachis hypogaea L.), their roles in development and defense remain unknown. In this research, we study the spatiotemporal expression of AhGLPs in peanut and their functions in plant defense.

Results

We have identified three new AhGLP members (AhGLP3b, AhGLP5b and AhGLP7b) that have distinct but very closely related DNA sequences. The spatial and temporal expression profiles revealed that each peanut GLP gene has its distinct expression pattern in various tissues and developmental stages. This suggests that these genes all have their distinct roles in peanut development. Subcellular location analysis demonstrated that AhGLP2 and 5 undergo a protein transport process after synthesis. The expression of all AhGLPs increased in responding to Aspergillus flavus infection, suggesting AhGLPs'' ubiquitous roles in defense to A. flavus. Each AhGLP gene had its unique response to various abiotic stresses (including salt, H₂O₂ stress and wound), biotic stresses (including leaf spot, mosaic and rust) and plant hormone stimulations (including SA and ABA treatments). These results indicate that AhGLPs have their distinct roles in plant defense. Moreover, in vivo study of AhGLP transgenic Arabidopsis showed that both AhGLP2 and 3 had salt tolerance, which made transgenic Arabidopsis grow well under 100 mM NaCl stress.

Conclusions

For the first time, our study analyzes the AhGLP gene expression profiles in peanut and reveals their roles under various stresses. These results provide an insight into the developmental and defensive roles of GLP gene family in peanut.     

Hepcidin and Host Defense against Infectious Diseases

Hepcidin is the master regulator of iron homeostasis in vertebrates. The synthesis of hepcidin is induced by systemic iron levels and by inflammatory stimuli. While the role of hepcidin in iron regulation is well established, its contribution to host defense is emerging as complex and multifaceted. In this review, we summarize the literature on the role of hepcidin as a mediator of antimicrobial immunity. Hepcidin induction during infection causes depletion of extracellular iron, which is thought to be a general defense mechanism against many infections by withholding iron from invading pathogens. Conversely, by promoting iron sequestration in macrophages, hepcidin may be detrimental to cellular defense against certain intracellular infections, although critical in vivo studies are needed to confirm this concept. It is not yet clear whether hepcidin exerts any iron-independent effects on host defenses.     

Killing of Trypanosomatid Parasites by a Modified Bovine Host Defense Peptide,BMAP-18

Background

Tropical diseases caused by parasites continue to cause socioeconomic devastation that reverberates worldwide. There is a growing need for new control measures for many of these diseases due to increasing drug resistance exhibited by the parasites and problems with drug toxicity. One new approach is to apply host defense peptides (HDP; formerly called antimicrobial peptides) to disease control, either to treat infected hosts, or to prevent disease transmission by interfering with parasites in their insect vectors. A potent anti-parasite effector is bovine myeloid antimicrobial peptide-27 (BMAP-27), a member of the cathelicidin family. Although BMAP-27 is a potent inhibitor of microbial growth, at higher concentrations it also exhibits cytotoxicity to mammalian cells. We tested the anti-parasite activity of BMAP-18, a truncated peptide that lacks the hydrophobic C-terminal sequence of the BMAP-27 parent molecule, an alteration that confers reduced toxicity to mammalian cells.

Methodology/Principal Findings

BMAP-18 showed strong growth inhibitory activity against several species and life cycle stages of African trypanosomes, fish trypanosomes and Leishmania parasites in vitro. When compared to native BMAP-27, the truncated BMAP-18 peptide showed reduced cytotoxicity on a wide variety of mammalian and insect cells and on Sodalis glossindius, a bacterial symbiont of the tsetse vector. The fluorescent stain rhodamine 123 was used in immunofluorescence microscopy and flow cytometry experiments to show that BMAP-18 at low concentrations rapidly disrupted mitochondrial potential without obvious alteration of parasite plasma membranes, thus inducing death by apoptosis. Scanning electron microscopy revealed that higher concentrations of BMAP-18 induced membrane lesions in the parasites as early as 15 minutes after exposure, thus killing them by necrosis. In addition to direct killing of parasites, BMAP-18 was shown to inhibit LPS-induced secretion of tumour necrosis factor alpha (TNF-α), a cytokine that is associated with inflammation and cachexia (wasting) in sleeping sickness patients. As a prelude to in vivo applications, high affinity antibodies to BMAP-18 were produced in rabbits and used in immuno-mass spectrometry assays to detect the intact peptide in human blood and plasma.

Conclusions/Significance

BMAP-18, a truncated form of the potent antimicrobial BMAP-27, showed low toxicity to mammalian cells, insect cells and the tsetse bacterial symbiont Sodalis glossinidius while retaining an ability to kill a variety of species and life cycle stages of pathogenic kinetoplastid parasites in vitro. BMAP-18 also inhibited secretion of TNF-α, an inflammatory cytokine that plays a role in the cachexia associated with African sleeping sickness. These findings support the idea that BMAP-18 should be explored as a candidate for therapy of economically important trypanosome-infected hosts, such as cattle, fish and humans, and for paratransgenic expression in Sodalis glossinidius, a bacterial symbiont in the tsetse vector, as a strategy for interference with trypanosome transmission.     

Maternal Defence of a Leaf Beetle is not Effective against Parasitoids but is against Pedestrian Predators

Females of the subsocial leaf beetle Gonioctena sibirica attend their broods on the willow Salix bakko. Females with broods settle on the underside of the basal part of leaves and face towards the base of the shoots. If other arthropods approach such attendant females, the females show aggressive behaviour against the intruder. The effectiveness of maternal care on offspring survival against pedestrian predators and against a parasitoid wasp was evaluated in field experiments using three groups: broods from which parent females were experimentally removed, those from which females were removed and pedestrian predators were excluded by tanglefoot treatments, and control broods. These experiments showed that maternal care was highly effective against pedestrian predators, but parasitism was not affected by the presence of females. Offspring mortality by predation or by parasitism was not usually dependent on larval densities. Position and orientation of attendant females will be effective for them to detect intruders which approach their larvae by walking along the stem, while it can inhibit the females from detecting parasitoids which fly and land directly on the leaf close to the larvae. The results suggest a trade-off in the effectiveness of prey defensive behaviour against different enemy species: prey defensive behaviour specific to one type of the enemy may make the prey more vulnerable to the other.     

Defense against malware propagation in complex heterogeneous networks

Cluster Computing - Devising appropriate defense strategies against malware propagation in complex networks with minimal budget is a challenging problem in research community. This paper studies...