The Importance of Biotic vs. Abiotic Drivers of Local Plant Community Composition Along Regional Bioclimatic Gradients

We assessed if the relative importance of biotic and abiotic factors for plant community composition differs along environmental gradients and between functional groups, and asked which implications this may have in a warmer and wetter future. The study location is a unique grid of sites spanning regional-scale temperature and precipitation gradients in boreal and alpine grasslands in southern Norway. Within each site we sampled vegetation and associated biotic and abiotic factors, and combined broad- and fine-scale ordination analyses to assess the relative explanatory power of these factors for species composition. Although the community responses to biotic and abiotic factors did not consistently change as predicted along the bioclimatic gradients, abiotic variables tended to explain a larger proportion of the variation in species composition towards colder sites, whereas biotic variables explained more towards warmer sites, supporting the stress gradient hypothesis. Significant interactions with precipitation suggest that biotic variables explained more towards wetter climates in the sub alpine and boreal sites, but more towards drier climates in the colder alpine. Thus, we predict that biotic interactions may become more important in alpine and boreal grasslands in a warmer future, although more winter precipitation may counteract this trend in oceanic alpine climates. Our results show that both local and regional scales analyses are needed to disentangle the local vegetation-environment relationships and their regional-scale drivers, and biotic interactions and precipitation must be included when predicting future species assemblages.     

Can functional groups be used to indicate estuarine ecological status?

International legislation demands that statutory bodies report on the health of aquatic ecosystems. Traditionally, ecosystem components have been characterised according to species assemblages but with limited success in predicting health. On the other hand, many studies based upon functional groupings that include trophic relationships and bioturbation potential have shown response to pollution. However, these and other functional group responses have not yet been linked to broad scale physical variables. To date this has hindered the development of a predictive model of function based on abiotic factors. In addition, most functional studies ignore any potential role of body size when assessing the importance of each species to overall functional group measures. By weighting all species that belong to the same guild equally, the investigator risks overestimating the true importance of any one guild to the environment. This study compared the ability of different functional group approaches to discriminate between separate estuarine sites, whilst linking biotic data with abiotic factors. Using data for the Tamar Estuary, we show that no two methods of classifying the biotic data, according to function, produce the same groupings of sites; nor did any method produce groupings that matched clusters based on abiotic factors alone. Instead, results show that not only can choice of functional method alter our perception of site associations but also, can influence the strength of similarity relationships between abiotic and biotic datasets. Both the use of bioturbation measures and weighting species abundance data by body size provided better relationships between biotic and abiotic data than the use of trophic groups. Thus both methods merit further research to produce algorithms for modelling studies.     

Plant controls on Late Quaternary whole ecosystem structure and function

Plants and animals influence biomass production and nutrient cycling in terrestrial ecosystems; however, their relative importance remains unclear. We assessed the extent to which mega‐herbivore species controlled plant community composition and nutrient cycling, relative to other factors during and after the Late Quaternary extinction event in Britain and Ireland, when two‐thirds of the region's mega‐herbivore species went extinct. Warmer temperatures, plant–soil and plant–plant interactions, and reduced burning contributed to the expansion of woody plants and declining nitrogen availability in our five study ecosystems. Shrub biomass was consistently one of the strongest predictors of ecosystem change, equalling or exceeding the effects of other biotic and abiotic factors. In contrast, there was relatively little evidence for mega‐herbivore control on plant community composition and nitrogen availability. The ability of plants to determine the fate of terrestrial ecosystems during periods of global environmental change may therefore be greater than previously thought.     

Construction of Sand Shinnery Oak Communities of the Llano Estacado: Animal Disturbances, Plant Community Structure, and Restoration

In land restoration it is imperative to study the potential role of disturbances, biotic or abiotic, that may provide sites for colonization by specific plants. Disturbances can alter community composition by removing species or allowing others to become established. In communities where animal-generated disturbances open sites for seedling establishment, animals may have important indirect effects on several aspects of plant community structure. Animal disturbances in Quercus havardii communities of western Texas appear to open sites for colonization by herbaceous species. These animal disturbances vary in spatial distribution, density, and abiotic and biotic characteristics. The abundance of herbaceous plant seedlings is positively related to bare ground and the number of distinct disturbances. Thus, the density and the spatial distribution of these disturbances may be expected to have an important influence on the abundance and dispersion of plant species. Therefore, successful restoration efforts of sand shinnery oak communities and other similar habitats must consider the effects of animal disturbances and the role of plant-animal and plant-soil microbe interactions on plant community composition and the maintenance of plant species diversity.     

Climate extremes are associated with invertebrate taxonomic and functional composition in mountain lakes

Climate change is expected to increase climate variability and the occurrence of extreme climatic events, with potentially devastating effects on aquatic ecosystems. However, little is known about the role of climate extremes in structuring aquatic communities or the interplay between climate and local abiotic and biotic factors. Here, we examine the relative influence of climate and local abiotic and biotic conditions on biodiversity and community structure in lake invertebrates. We sampled aquatic invertebrates and measured environmental variables in 19 lakes throughout California, USA, to test hypotheses of the relationship between climate, local biotic and environmental conditions, and the taxonomic and functional structure of aquatic invertebrate communities. We found that, while local biotic and abiotic factors such as habitat availability and conductivity were the most consistent predictors of alpha diversity, extreme climate conditions such as maximum summer temperature and dry‐season precipitation were most often associated with multivariate taxonomic and functional composition. Specifically, sites with high maximum temperatures and low dry‐season precipitation housed communities containing high abundances of large predatory taxa. Furthermore, both climate dissimilarity and abiotic dissimilarity determined taxonomic turnover among sites (beta diversity). These findings suggest that while local‐scale environmental variables may predict alpha diversity, climatic variability is important to consider when projecting broad‐scale aquatic community responses to the extreme temperature and precipitation events that are expected for much of the world during the next century.     

Stream community richness predicts apex predator occupancy dynamics in riparian systems

Streams and adjacent riparian habitats represent linked terrestrial and aquatic ecosystems that exchange materials and energy. Recognized relationships among apex predators and ecosystem biodiversity led us to hypothesize that these predators in riparian‐stream systems were more likely to be found in sites with high stream quality, defined as increased ecosystem function and integrity. In our freshwater study system, river otter Lontra canadensis and mink Neovison vison play critical roles as apex predators. We used multi‐season occupancy modelling across three sampling years (2012–2014) to compare aspects of the stream communities that explain occupancy dynamics of river otter and mink, including their interactions with other semi‐aquatic mammals. We surveyed for semi‐aquatic mammals at 77 sites in 12 major watersheds in southern Illinois, USA (44 526 km²). Naïve occupancy differed among years but generally increased for river otter, and remained high (≥93.5%) for mink. Increasing substrate availability increased detectability of river otter, whereas mink detection varied by survey period. Occupancy of river otter during the initial survey period was higher in sites closer to reintroduction points. Probability of colonization of river otter was positively associated with macroinvertebrate index of biotic integrity, fish species richness, and beaver presence. Sites with high species richness of fish families preferred by river otter also had increased river otter persistence. Mink occupied sites with increased fish richness, muskrat presence and mussel community index. Taken together, our results show occupancy of both mink and river otter were predicted by aspects of prey diversity and presence, indicating the importance of community composition in occupancy dynamics of riparian predators. Ultimately, these relationships suggest that habitat heterogeneity and system stability are important to apex predator site use. However, the relative role of bottom–up and top–down forcing in stream systems remains to be resolved.     

Plant community responses to nitrogen addition and increased precipitation: the importance of water availability and species traits

Global nitrogen (N) enrichment and changing precipitation regimes are likely to alter plant community structure and composition, with consequent influences on biodiversity and ecosystem functioning. Responses of plant community structure and composition to N addition and increased precipitation were examined in a temperate steppe in northern China. Increased precipitation and N addition stimulated and suppressed community species richness, respectively, across 6 years (2005–2010) of the manipulative experiment. N addition and increased precipitation significantly altered plant community structure and composition at functional groups levels. The significant relationship between species richness and soil moisture (SM) suggests that plant community structure is mediated by water under changing environmental conditions. In addition, plant height played an important role in affecting the responses of plant communities to N addition, and the effects of increased precipitation on plant community were dependent on species rooting depth. Our results highlight the importance and complexity of both abiotic (SM) and biotic factors (species traits) in structuring plant community under changing environmental scenarios. These findings indicate that knowledge of species traits can contribute to mechanistic understanding and projection of vegetation dynamics in response to future environmental change.     

Plant community and soil conditions individually affect soil microbial community assembly in experimental mesocosms

Soils harbor large, diverse microbial communities critical for local and global ecosystem functioning that are controlled by multiple and poorly understood processes. In particular, while there is observational evidence of relationships between both biotic and abiotic conditions and microbial composition and diversity, there have been few experimental tests to determine the relative importance of these two sets of factors at local scales. Here, we report the results of a fully factorial experiment manipulating soil conditions and plant cover on old‐field mesocosms across a latitudinal gradient. The largest contributor to beta diversity was site‐to‐site variation, but, having corrected for that, we observed significant effects of both plant and soil treatments on microbial composition. Separate phyla were associated with each treatment type, and no interactions between soil and plant treatment were observed. Individual soil characteristics and biotic parameters were also associated with overall beta‐diversity patterns and phyla abundance. In contrast, soil microbial diversity was only associated with site and not experimental treatment. Overall, plant community treatment explained more variation than soil treatment, a result not previously appreciated because it is difficult to dissociate plant community composition and soil conditions in observational studies across gradients. This work highlights the need for more nuanced, multifactorial experiments in microbial ecology and in particular indicates a greater focus on relationships between plant composition and microbial composition during community assembly.     

Ecosystem Linkages between Southern Appalachian Headwater Streams and Their Banks: Leaf Litter Breakdown and Invertebrate Assemblages

We examined red maple (Acer rubrum L.) leaf litter breakdown in streams and riparian zones at two sites in the southern Appalachian Mountains to understand how differences in abiotic and biotic factors influence leaf breakdown rates. Litterbags were placed in three riparian habitats differing in litter layer moisture: stream > bank > upland. Invertebrates colonizing litterbags at one site were also examined to determine how variations in community and functional structure affect breakdown rates. Leaves broke down fastest in streams and slowest in upland habitats, whereas bank habitats were intermediate and characterized by high variability. Faster leaf breakdown rates in streams appeared to be a function of greater moisture availability, a more stable thermal regime, and a higher biomass of leaf-shredding invertebrates, especially the stonefly Tallaperla. In addition, patterns of leaf breakdown and invertebrate community structure provided evidence for a stronger than expected ecological connection between the stream and the bank. Overall, detritus processing within this narrow riparian ecosystem varied considerably depending on the availability of moisture. Results from this study show that stream channel–floodplain interactions in riparian ecosystems of steep forested mountains are analogous to ones in larger downstream or low-gradient systems. Riparian zones throughout a river network display a remarkable heterogeneity in their ability to process organic matter, which is ultimately driven by changes in hydrological conditions. Received 6 March 2001; accepted 3 July 2001.     

Temperature and multiple parasites combine to alter host community structure

Predicting the effects of climate change requires understanding complex interactions among multiple abiotic and biotic factors. By influencing key interactions among host species, parasites can affect community and ecosystem structuring. Yet, our understanding of how multiple parasites and abiotic factors interact to alter ecosystem structure remains limited. To empirically test the role of temperature variation and parasites in shaping communities, we used a multigenerational mesocosm experiment composed of four sympatric freshwater crustacean species (isopods and amphipods) that share up to four parasite species. Mesocosms were assigned to one of four different treatments with contrasting seasonal temperatures (normal and elevated) and parasite exposure levels (continuous and arrested (presence or absence of parasite larvae in mesocosm)). We found that parasite exposure and water temperature had interactive effects on the host community. Continuous exposure to parasites altered the community structure and differences in water temperature altered species abundance. The abundance of the amphipod Paracalliope fluviatilis decreased substantially when experiencing continuous parasite exposure and elevated water temperatures. Elevated temperatures also led to parasite-induced mortality in another amphipod host, Paracorophium excavatum. Contrastingly, isopod hosts were affected much less, suggesting increasing temperatures in conjunction with higher parasite exposure might increase their relative abundance in the community. Changes in invertebrate host populations have implications for other species such as fish and birds that consume crustaceans as well as having impacts on ecosystem processes, such as aquatic primary production and nutrient cycling. In light of climate change predictions, parasite exposure and rise in average temperatures may have substantial impacts on communities and ecosystems, altering ecosystem structure and dynamics.     

Structural and functional development of twelve newly established floodplain pond mesocosms

Ecosystems are complex structures with interacting abiotic and biotic processes evolving with ongoing succession. However, limited knowledge exists on the very initial phase of ecosystem development and colonization. Here, we report results of a comprehensive ecosystem development monitoring for twelve floodplain pond mesocosms (FPM; 23.5 m × 7.5 m × 1.5 m each) located in south‐western Germany. In total, 20 abiotic and biotic parameters, including structural and functional variables, were monitored for 21 months after establishment of the FPMs. The results showed evolving ecosystem development and primary succession in all FPMs, with fluctuating abiotic conditions over time. Principal component analyses and redundancy analyses revealed season and succession time (i.e., time since ecosystem establishment) to be significant drivers of changes in environmental conditions. Initial colonization of both aquatic (i.e., water bodies) and terrestrial (i.e., riparian land areas) parts of the pond ecosystems occurred within the first month, with subsequent season‐specific increases in richness and abundance for aquatic and terrestrial taxa over the entire study period. Abiotic environmental conditions and aquatic and terrestrial communities showed increasing interpond variations over time, that is, increasing heterogeneity among the FPMs due to natural environmental divergence. However, both functional variables assessed (i.e., aquatic and terrestrial litter decomposition) showed opposite patterns as litter decomposition rates slightly decreased over time and interpond differences converged with successional ecosystem developments. Overall, our results provide rare insights into the abiotic and biotic conditions and processes during the initial stages of freshwater ecosystem formation, as well as into structural and functional developments of the aquatic and terrestrial environment of newly established pond ecosystems.     

Do biotic interactions modulate ecosystem functioning along stress gradients? Insights from semi-arid plant and biological soil crust communities

Climate change will exacerbate the degree of abiotic stress experienced by semi-arid ecosystems. While abiotic stress profoundly affects biotic interactions, their potential role as modulators of ecosystem responses to climate change is largely unknown. Using plants and biological soil crusts, we tested the relative importance of facilitative–competitive interactions and other community attributes (cover, species richness and species evenness) as drivers of ecosystem functioning along stress gradients in semi-arid Mediterranean ecosystems. Biotic interactions shifted from facilitation to competition along stress gradients driven by water availability and temperature. These changes were, however, dependent on the spatial scale and the community considered. We found little evidence to suggest that biotic interactions are a major direct influence upon indicators of ecosystem functioning (soil respiration, organic carbon, water-holding capacity, compaction and the activity of enzymes related to the carbon, nitrogen and phosphorus cycles) along stress gradients. However, attributes such as cover and species richness showed a direct effect on ecosystem functioning. Our results do not agree with predictions emphasizing that the importance of plant–plant interactions will be increased under climate change in dry environments, and indicate that reductions in the cover of plant and biological soil crust communities will negatively impact ecosystems under future climatic conditions.     

Patterns of Fusarium community structure and abundance in relation to spatial, abiotic and biotic factors in soil

Members of the Fusarium genus are important components of many plant–soil systems worldwide and are responsible for many crop diseases. Knowledge of the relative influence of biotic and abiotic factors on this genus is therefore of broad economic and ecological importance. In order to address this issue, we examined Fusarium communities in soils nearby apparently healthy and symptomatic asparagus plants in 50 fields scattered in four agricultural regions of Québec, Canada. Fusarium community structure and abundance were assessed using genus-specific PCR-denaturing gradient gel electrophoresis and CFU counts, respectively. Multivariate statistical analyses were used to detect community patterns related to spatial, abiotic and biotic factors. Results suggested that Fusarium community structure (i.e. the presence and absence of the different Fusarium sequence variants in the samples) in soil is mainly related to biotic factors (arbuscular mycorrhizal fungi and bacterial community structure), whereas Fusarium abundance is more closely related to abiotic factors (mainly clay, organic matter, NH₄, Na and Cu). Some degree of influence of spatial patterns was also observed on both Fusarium community structure and abundance with, for instance, a large regional variation in Fusarium community structure. However, Fusarium community structure was not directly related to the disease status of nearby asparagus plants.     

Differential effects of functional traits on aboveground biomass in semi-natural grasslands

Despite increasing evidence on the importance of species functional characteristics for ecosystem processes, two major hypotheses suggest different mechanisms: the ‘mass ratio hypothesis’ assumes that functional traits of the dominant species determine ecosystem processes, while the ‘complementarity hypothesis’ predicts that resource niches may be used more completely when a community is functionally more diverse. Here, we present a method which uses two different groups of biotic predictor variables being (1) abundance‐weighted mean (=aggregated) trait values and (2) functional trait diversity based on Rao's quadratic diversity (FD_Q) to test the competing hypotheses on biodiversity–ecosystem functioning relationships after accounting for co‐varying abiotic factors. We applied this method to data recorded on biodiversity–biomass relationships and environmental variables in 35 semi‐natural temperate grasslands and used a literature‐based matrix of fourteen plant functional traits to assess the explanatory power of models including different sets of predictor variables. Aboveground community biomass did not correlate with species richness. Abiotic factors, in particular soil nitrogen concentration, explained about 50% of variability in aboveground biomass. The best model incorporating functional trait diversity explained only about 30%, while the best model based on aggregated trait values explained about 54% of variability in aboveground biomass. The inclusion of all predictor variable groups in a combined model increased the predictive power to about 75%. This model comprised soil nitrogen concentration as abiotic factor, aggregated traits being indicative for species competitive dominance (rooting depth, leaf distribution, specific leaf area, perennial life cycle) and functional trait diversity in vegetative plant height, leaf area and life cycle. Our study strongly suggests that abiotic factors, trait values of the dominant species and functional trait diversity in combination may best explain differences in aboveground community biomass in natural ecosystems and that their isolated consideration may be misleading.     

WRKY转录因子与植物逆境响应

WRKY转录因子是高等植物特有的一类转录调控因子,也是植物生命活动中不可或缺的调控枢纽。研究发现,WRKY转录因子参与植物生长发育过程及多种生物与非生物逆境响应。本文分析了WRKY转录因子的分类及结构,对其多种作用机制包括上游调控、下游调控、蛋白质相互作用等进行了归类,总结了近年来在各类植物上发现的WRKY转录因子调控植物生长发育和参与植物响应生物及非生物逆境的多重功能。并针对目前WRKY转录因子的研究所存在的问题,提出部分意见,为进一步挖掘WRKY家族的功能机制奠定了基础。     

High resilience of aquatic community to a 100-year flood in a gravel-bed river

Our understanding of ecosystem responses to exceedingly large rare flood events is currently limited. We report the resilience of aquatic community to a 100-year record-high flood, and how it varies depending on levels of water pollution, in a fourth-order gravel-bed river in northern Japan. We used data on riparian landscape structure, channel morphology, and community structure of aquatic fauna, which were collected in sites with and without effluent before (1 month–3 years) and after (10 months) the flood. Carbon and nitrogen stable isotope ratios of consumers and basal resources were measured only before (1 year) the flood. We observed aquatic food web with introduced rainbow trout (Oncorhynchus mykiss) as the top predator, with variable relative contributions of basal resources and their pathways to the rainbow trout, under the effects of water pollution. Biofilm-originating dietary carbon became the more dominant resource, with a slightly shorter food-chain length in the polluted sites. The flood led to a loss of riparian forest and a substantial increase in the proportion of exposed gravel bars (5–24%). While the average river-bed elevation changed a little, the localized scours of river bed down to?>?2 m were observed with lateral shifts of channel thalweg. Despite the landscape-level physical and structural changes of ecosystem, aquatic community showed a remarkably high resilience exhibiting negligible changes in abundance, except in the polluted site where only fish abundance showed a slight decrease. This study suggests that the abundance of aquatic organisms in gravel-bed rivers is resilient to a flood of unprecedented magnitude in recent history.

     

植物功能性状与湿地生态系统土壤碳汇功能

湿地生态系统碳平衡对气候变化极为敏感,是陆地生态系统碳循环响应全球变化的重要环节。然而,湿地生态系统碳汇调节机制仍不十分清楚,并且对影响因子的研究多集中在非生物因子上。综述了植物功能性状和功能性状多样性对湿地生态系统土壤碳汇功能的影响,阐明了生物因子对生态系统碳循环响应全球变化的重要性,介绍了植物功能性状对生态系统碳输入和输出过程的影响,简述了植物功能性状多样性的研究现状及其在指示生态系统碳汇功能现状和预测未来趋势等方面的应用。从优势植物、植物种间关系和植物-微生物种间关系3方面总结了植物功能性状多样性直接和间接影响生态系统碳循环的途径。展望了植物功能性状和功能性状多样性与湿地生态系统土壤碳汇功能的研究前景。     

ERFs转录因子及其在植物胁迫应答中的作用

ERFs(ethylene-responsive factors)是植物特有的一类转录因子,位于乙烯信号转导途径的下游,具有一个高度保守的含58或59个氨基酸的DNA结合域,通过结合相关基因的启动子顺式作用元件调控植物生物和非生物胁迫反应。综述ERF转录因子的结构特征和分类及其在植物抗逆作用中的研究进展。     

Assessing abiotic correlations of an indicator species with sympatric riparian birds in a threatened submontane river–forest system using joint species modelling

Aim

To assess the abiotic correlations between indicator species and others in the community. Additionally, we evaluated the importance of environmental variables in driving the co-occurrence patterns of the coexisting riparian bird species within a threatened aquatic and terrestrial system.

Location

Seven classic submontane rivers in riparian ecosystems of the Changbai Mountains in eastern Jilin Province, China, elevation ranging from 351 to 942 m.

Methods

Joint species distribution models (JSDMs) were applied to examine the relative importance of abiotic and potential species associations driving the abundance and cooccurrence of bird species along submontane riparian zones. The abiotic factors were examined with a focus on the scaly-sided Merganser and the coexisting bird species potentially sharing or interacting within the same niche.

Results

We found that the co-occurrence patterns of submontane riparian bird species were dominantly driven by numerous positive correlations when incorporating abiotic variables. The scaly-sided Merganser exhibited the greatest number of correlations with other species and exhibited significant responses to most of the measured environmental variables. Land cover diversity, proportion of gravel bars, and channel width were the most common environmental factors affecting riparian bird species distribution.

Conclusions

Using JSDM, we found that the indicator roles of the scaly-sided Merganser are mainly derived from shared environmental responses with coexisting riparian bird species; moreover, the composition of submontane riparian bird communities is affected by both environmental variables and potential species associations. Our results verified the central role of the scaly-sided Merganser as an indicator species in submontane riparian ecosystems due to their strict physical environment preferences and extensive connections with other sympatric riparian bird species, primarily through shared environmental intersections. Our results emphasize the crucial necessity for simultaneously considering environmental predictors and potential species associations in modelling species distributions and to better realizing the roles of indicators in practical applications.     

Local-scale drivers of tree survival in a temperate forest

Tree survival plays a central role in forest ecosystems. Although many factors such as tree size, abiotic and biotic neighborhoods have been proposed as being important in explaining patterns of tree survival, their contributions are still subject to debate. We used generalized linear mixed models to examine the relative importance of tree size, local abiotic conditions and the density and identity of neighbors on tree survival in an old-growth temperate forest in northeastern China at three levels (community, guild and species). Tree size and both abiotic and biotic neighborhood variables influenced tree survival under current forest conditions, but their relative importance varied dramatically within and among the community, guild and species levels. Of the variables tested, tree size was typically the most important predictor of tree survival, followed by biotic and then abiotic variables. The effect of tree size on survival varied from strongly positive for small trees (1-20 cm dbh) and medium trees (20-40 cm dbh), to slightly negative for large trees (>40 cm dbh). Among the biotic factors, we found strong evidence for negative density and frequency dependence in this temperate forest, as indicated by negative effects of both total basal area of neighbors and the frequency of conspecific neighbors. Among the abiotic factors tested, soil nutrients tended to be more important in affecting tree survival than topographic variables. Abiotic factors generally influenced survival for species with relatively high abundance, for individuals in smaller size classes and for shade-tolerant species. Our study demonstrates that the relative importance of variables driving patterns of tree survival differs greatly among size classes, species guilds and abundance classes in temperate forest, which can further understanding of forest dynamics and offer important insights into forest management.