The Polarity of the Cell-wall of Valonia

Further evidence is presented to show that the systems of orientationof cellulose fibrils in the cell-walls of Valonia and Dictyosphaeriamay be described by reference to two ‘poles’ uponwhich these orientation systems converge. The ‘poles’are real structural features of the wall.     

The Vascular Pattern of a Rhizomatous Ginger (Alpinia speciosa L. Zingiberaceae). 2. The Rhizome

The vascular system in the underground rhizome of Alpinia speciosaL. (Zingiberaceae) is seen to be arranged in three distinctzones. (1) An inner system of ‘scattered’ vascularbundles which serial cinematography reveals to have an axialpattern conforming to the basic ‘palm’ configuration(a system of upwardly branching leaf traces with interconnections).(2) An intermediate zone comprising a thin perforated cylinderof anastomosing vascular strands having direct contact withboth roots and inner system bundles. (3) An outer system offreely-anastomosing vascular bundles. Connexion of outer andinner system occurs in the form of extensive bridging from innersystem leaf traces as they depart obliquely between the outersystem network. The interrelation of the three systems, plus root and branchinsertion, is illustrated by means of diagrammatic three-dimensionalreconstructions. The intermediate zone is intimately associatedwith root insertions and with the inner system, and is shownto obliviate potential bottlenecks at the point of lateral branchinsertion in this sympodial rhizome system. A comparison ismade with other monocotyle-donous vascular systems. Alpinia speciosa L., shell ginger, rhizome, vascular anatomy     

Lam, E., Fukuda, H., Greenberg, J., eds. Programmed cell death in higher plants

‘For everything there is a season . . . a timeto build up and a time to break down . . . a timeto live and a time to die.’ The quotation comes from the work of a Jewish scholar writingunder the pen name Ecclesiastes or The Preacher, several centuriesBC. His words capture the theme of the book under review here:that death is part of life and may be regulated by factors thatinclude time and season. Programmed cell death in higher plantsis a hardback reprint of a special edition of Plant MolecularBiology, devoted to scholarly     

The C-value enigma in plants and animals: a review of parallels and an appeal for partnership

• Aims Plants and animals represent the first two kingdomsrecognized, and remain the two best-studied groups in termsof nuclear DNA content variation. Unfortunately, the traditionalchasm between botanists and zoologists has done much to preventan integrated approach to resolving the C-value enigma, thelong-standing puzzle surrounding the evolution of genome size.This grand division is both unnecessary and counterproductive,and the present review aims to illustrate the numerous linksbetween the patterns and processes found in plants and animalsso that a stronger unity can be developed in the future. • Scope This review discusses the numerous parallels thatexist in genome size evolution between plants and animals, including(i) the construction of large databases, (ii) the patterns ofDNA content variation among taxa, (iii) the cytological, morphological,physiological and evolutionary impacts of genome size, (iv)the mechanisms by which genomes change in size, and (v) thedevelopment of new methodologies for estimating DNA contents. • Conclusions The fundamental questions of the C-valueenigma clearly transcend taxonomic boundaries, and increasedcommunication is therefore urged among those who study genomesize evolution, whether in plants, animals or other organisms.     

Dunaliella salina: A model System for Studying the Response of Plant Cells to Stress

This review focuses on the biochemical and physiological responseof the halotolerant green alga, Dunaliella salina, to conditionsof stress. It is now well established that in response to stress,cells of Dunaliella salina var. bardawil show increased glycerolproduction, massive ßcarotene accumulation and enhancedabscisic acid metabolism. In this respect, cellular responsesare regulatory and seem to depend on a diversity of mechanismswhich may be linked to a modification of the abscisic acid balance.Dunaliella lacks a rigid cell wall and the cellular contentsare enclosed by an elastic plasma membrane that permits rapidcell volume changes in response to extracellular changes inosmolarity. Based on the ‘stretch activated ion channelsmodel’ reviewed recently by Kirst (1990) we propose thefollowing cascade of responses: volume change/distortion ofplasmalemma     

Extraction of photosynthesis-irradiance parameters from phytoplankton production data: demonstration in various aquatic systems

A method is presented for extraction of the photosynthesis-responseparameters from profiles of phytoplankton production. The procedure,previously proposed but not tested, is implemented here in varioustypes of aquatic system and a protocol is established for itsuse. Values of daily primary production integrated over thephotic zone were estimated from in situ or simulated in situincubations in four coastal and open-ocean marine systems, andfrom photosynthesis-irradiance (P–E) curves in the afore-mentionedmarine systems, as well as in two freshwater systems. The slopeof the measured daily water-column production (normalised towater-column chlorophyll a biomass) plotted against the dailyincident irradiance was variable from system to system (0.09to 0.60), showing a broader range than previously reported values.Using an iterative procedure, we estimated the photosyntheticparameters from this linear relationship. Generally, estimatedvalues lie within the 95% confidence interval of the photosyntheticparameters obtained from the P–E curves, showing thatthe estimates agree well with measurements. The new method,based on the photophysiological response of the phytoplanktoncommunity, provides a way to enhance our ability to computeprimary production from remote sensing of ocean colour.     

Does Late-acting Self-incompatibility (LSI) Show Family Clustering? Two More Species of Bignoniaceae with LSI:Dolichandra cynanchoides and Tabebuia nodosa

By means of hand pollination experiments and fluorescence microscopythe breeding systems and pollen tube growth were studied inDolichandra cynanchoides and Tabebuia nodosa, two bignoniaceousspecies of the Chaco woodland of NE Argentina. Both speciesabscised all selfed pistils within 4–8 d although selfpollen tubes grew successfully to the ovary and penetrated manyovules. Both species therefore show ‘late-acting self-incompatibility’(LSI) or ‘ovarian sterility’ (OS) type control ofselfing. LSI-OS has been reported in 17 species of the Bignoniaceae,and is also clustered in families such as the Bombacaceae-Sterculiaceae,Fabaceae and Myrtaceae. The implications of such family clusteringare discussed, with regard to current hypotheses for the actionof LSI-OS phenomena. Copyright 1999 Annals of Botany Company Bignoniaceae, Dolichandra cynanchoides, Tabebuia nodosa, Chaco, late-acting self-incompatibility, ovarian sterility.     

Coastal eutrophication: recent developments in definitions and implications for monitoring strategies

The word ‘eutrophication’ has its root in two Greekwords: ‘eu’ which means ‘well’ and ‘trope’which means ‘nourishment’. The modern use of theword eutrophication is related to inputs and effects of nutrientsin aquatic systems. Despite a common understanding of its causesand effects, there is no agreed definition of coastal eutrophication.This communication aims to review recent developments in thedefinitions of coastal eutrophication, all of which focus on‘accelerated growth’, and to discuss the implicationsin relation to monitoring and assessment of ecological status.It is recommended that measurements of primary production, beinga sensitive and accurate indicator of eutrophication, shouldbe mandatory when monitoring and assessing the ecological statusof coastal waters. Written responses to this article should be submitted to KevinFlynn at k.j.flynn@swansea.ac.uk within two months of publication.For further information, please see the Editorial ‘Horizons’in Journal of Plankton Research, Volume 26, Number 3, Page 257.     

Comparisons of the Respiratory Effluxes of Nodules and Roots in Six Temperate Legumes

The specific respiration rates of nodulated root systems, ofnodules and of roots were determined during active nitrogenfixation in soya bean, navy bean, pea, lucerne, red clover andwhite clover, by measurements on whole plants before and afterthe removal of nodule populations. Similar measurements weremade on comparable populations of the six legumes, lacking nodulesbut receiving abundant nitrate-nitrogen, to determine the specificrespiration of their roots. All plants were grown in a controlled-environmentclimate which fostered rapid growth. The specific respiration rates of nodulated root systems ofthe three grain and three forage legumes during a 7–14-dayperiod of vegetative growth varied between 10 and 17 mg CO₂g^–1 (dry weight) h^–1. This mean value consistedof two components: a specific root respiration rate of 6–9mg CO₂ g^–1 h^–1 and a specific nodule respirationrate of 22–46 mg CO₂ g^–1 h^–1. Nodule respirationaccounted for 42–70 per cent of nodulated root respiration;nodule weight accounted for 12–40 per cent of nodulatedroot weight. The specific respiration rates of roots lackingnodules and utilizing nitrate nitrogen were generally 20–30per cent greater than the equivalent rates of roots from nodulatedplants. The measured respiratory effluxes are discussed in thecontext of nitrogen nitrogen fixation, nitrate assimilation. Glycine max, Phaseolus vulgaris, Pisum sativum, Medicago sativa, Trifolium pratense, Trifolium repens, soya bean, navy bean, pea, lucerne, red clover, white clover, nodule respiration, root respiration, fixation, nitrate assimilation     

EDITORIAL

Science journals face challenges from rapidly evolving businessmodels, diminishing library budgets and an increasing arrayof technological options for delivering content and processingsubmissions through peer review. The Annals of Botany is respondingby continually improving the service it provides to authors,readers and to its subscribers. Accordingly, several enhancementsand further streamlining are planned for 2006. We already makeall our ‘Botanical Briefings’ and ‘InvitedReviews’ available free of charge online from first publication.Annals of Botany now offers all authors the possibility of Open     

Developmental Genetics and Morphological Evolution of Flowering Plants, Especially Bladderworts (Utricularia): Fuzzy Arberian Morphology Complements Classical Morphology

This review compares new developmental models on flowering andother vascular plants with evolutionary hypotheses formulatedby Agnes Arber (1879–1960) and like-minded botanists.Special emphasis is laid on philosophical basics such as perspectivism,pluralism about evolutionary modelling, continuum way of thinking,and fuzzy logic. Arber's perspective is best labelled as F uzzyA rberian M orphology (FAM Approach). Its proponents (‘FAMmers’)treat structural categories (e.g. ‘roots’, ‘shoots’,‘stems’, ‘leaves’, ‘stipules’)in vascular plants as concepts with fuzzy borderlines allowingintermediates (including transitional forms, developmental mosaics).The FAM Approach complements Cla ssical Plant M orphology (ClaMApproach), which is the traditional approach in botany. ClaMproponents (‘ClaMmers’) postulate that the structuralcategories of vascular plants are regarded as concepts withclear-cut borderlines and without intermediates. However, duringthe evolution of vascular plants, the root-shoot distinctionand the stem-leaf distinction have become blurred several timesdue to developmental changes, resulting in organs with uniquecombinations of features. This happened, for example, in thebladderworts (Utricularia, Lentibulariaceae). When focusingon the ‘leaf’, the FAM Approach is identical toArber's ‘partial-shoot theory of the leaf’ and Sinha's‘leaf shoot continuum model’. A compound leaf canrepeat the developmental pathway of the whole shoot, at leastto some degree. For example, compound leaves of Chisocheton(Meliaceae)with indeterminate apical growth and three-dimensional branchingmay be seen as developmental mosaics sharing some growth processeswith whole shoots! We focus here on the FAM Approach becausethis perspective is especially promising for developmental geneticistsstudying flowering and other vascular plants. Copyright 2001Annals of Botany Company Review, body plan, developmental mosaics, leaf development, history of botany, homeosis, homeotic genes, Lentibulariaceae, morphological evolution, process morphology, stipules, Utricularia, flowering plants     

The Effects of Root Cooling and the Light--Dark Transition on Growth of Primary Leaves of Phaseolus vulgaris L.

Use of Rotary Variable Displacement Transducers attached togrowing primary leaves of Phaseolus vulgaris has shown thatwhen the root systems were rapidly cooled from 23°C to 10°Cleaf extension rate fell to very low values within a few minutes.When the root systems were returned to 23°C leaf extensionincreased almost immediately to overshoot the control rateswithin 5–10 min, before declining to control values overthe next 50–60 min. When lights went off at the end ofthe day cycle there was an immediate and very large increasein leaf extension rate in both root-cooled and control plants;the rate then slowly declined over the next 60 min. This effectwas seen when the photoperiod was artificially shortened orlengthened and was reduced in magnitude when the photoperiodwas ended gradually by dimming the lights. The effect was notattributable to effects on leaf temperature but appears to bethe result of an endogenous rhythm interacting with the endof the photoperiod. At the beginning of the photoperiod therewas a gradual reduction in leaf extension rate occurring over30–45 min. Key words: Phaseolus vulgaris, leaf growth, extension rate, root cooling, wall extensibility, turgor     

Zooplankton growth rates: extraordinary production by the larvacean Oikopleura dioica in tropical waters

The growth of Oikopleura dioica was determined from microcosmsincubated in situ at 29°C in Kingston Harbour, Jamaica.Minimum generation times approached 1 day, with Oikopleura dailyspecific growth rates ranging from 3 to 23 and averaging 10.7-foldincreases in biomass over 24 h. This was an order of magnitudegreater than the copepod Paracalanus crassirostris, whose growthrates ranged from 0.3 to 1.2 and averaged 0.67 day^–1 fromthe same experiments A reassessment of previous data indicatesthat larvacean production approaches, and may exceed, the 693kJ m^–2 annual production of the copepods. Growth rateand recruitment of Oikopleura decreased as the biomass of thezooplankton community increased; both resource and interferencecompetition are probably occurring. The extraordinary productionpotential of the Larvacea emphasizes their understated importancein marine planktonic systems.     

Genotypic, Developmental and Drought-Induced Differences in Root Hydraulic Conductance of Contrasting Sugarcane Cultivars

Hydraulic properties of entire root systems and isolated rootsof three contrasting sugarcane clones were evaluated using transpiration-induceddifferences in hydrostatic pressure across intact root systems,root pressure-generated xylem sap exudation, and pressure-fluxrelationships. Regardless of the measurement technique employed,the clones were ranked in the same order on the basis of theirleaf area–specific total root system hydraulic conductance(C_root). All methods employed detected large developmental changesin G_rootroot with maximum values occurring in plants with approximately02 m₂ total leaf area. Genotypic ranking according to G_root,was reflected as a similar ranking according to root length-specifichydraulic conductance (L) of individual excised roots. Genotypicdifferences in G_root and L were consistent with anatomical characteristicsobserved in individual roots. Patterns of G_root, during soildrying and following re-irrigation suggested that the declinein G_root, observed during soil drying occurred within the rootsrather than at the soil–root interface and may have beencaused in part by xylem cavitation in the roots. Key words: Root hydraulic conductance, Saccharum spp, transpiration, root pressure, pressure-flux     

The Bioinformatics Open Access option

We are pleased to report that July 2005 saw the launch of ournew Open Access option, part of the Oxford Open initiative (http://www.oxfordjournals.org/oxfordopen/).Bioinformatics authors can now choose to publish their work‘open access’ in an established, high-impact journal,under what we believe is a sustainable publication model. WHAT THIS MEANS FOR AUTHORS SUBMITTING TO BIOINFORMATICS The decision of whether to pay for open access is made by thecorresponding author upon acceptance (importantly this decisionis kept completely separate from the editorial review process).If a Bioinformatics author chooses to pay for the Open Accessoption, his or her paper will be made freely available onlineimmediately; if an author does not choose the option his orher     

Cell Separation Processes in Plants--Models, Mechanisms and Manipulation

Abscission and dehiscence are developmental processes that involvethe co-ordinated breakdown of the cell wall matrix at discretesites and at specific stages during the life cycle of a plant.In this review we examine the events that influence the differentiationof abscission and dehiscence zone cells and the changes thatare associated with wall degradation. There is convincing evidenceto believe that ethylene and auxin co-ordinate the timing ofleaf, flower and fruit abscission but the events that regulatedehiscence and seed abscission are unclear. The use of transgenicplants and model systems such as Arabidopsis is assisting ourunderstanding of the mechanisms that regulate abscission anddehiscence and the application of this information will advanceour understanding of cell separation processes in general. Armedwith this knowledge it should be possible to either delay oraccelerate abscission and dehiscence, and this could have majorbenefits for the agricultural and horticultural industries.Copyright 2000 Annals of Botany Company Abscission, dehiscence, cell separation, wall degradation, gene expression, polygalacturonase, ß-1,4-glucanase, pathogenesis-related proteins, ethylene     

Thermal Dependence of the Apparent Kmof Glutathione Reductase from Three Wetland Grasses and Maize

The thermal dependence of enzyme kinetic parameters has beenpresented as an indicator of species’ thermal optima andtolerance limits. Previous studies suggest the relationshipbetween temperature and the apparent Michaelis–Mentenconstant (K_m) of an enzyme system can be used to predict wholeplant success at specific temperatures. The apparent K_mfor glutathionereductase (EC 1.6.4.2; GR) (oxidized glutathione as substrate)extracted from leaves of American sloughgrass (Beckmannia syzigachneSteud.), tufted hairgrass (Deschampsia caespitosa L.), tallfescue (Festuca arundinaceae Schreb. ‘Titan’), andmaize (Zea mays L.), was determined over a range of temperatures(1–40 °C). For all species, minimum apparent K_mforGR was observed at 1 °C, and K_mvalues increased as temperatureincreased. The apparent K_mvalues differed among all speciesat the lower temperatures (1–15 °C), but were similarat higher temperatures. The enzyme from tufted hairgrass hadthe lowest apparent K_mat low temperatures (<15 °C), followedin increasing order by American sloughgrass, tall fescue andmaize. Our experimental system failed to reproduce thermal kineticwindow profiles similar to those reported elsewhere. With respectto the enzyme systems reported here, results suggest that thesecool-season grasses can be ranked as more to less eurythermicwithin the temperature range from 1 to 15 °C. Copyright0000 American sloughgrass, Beckmannia syzigachne Steud., tufted hairgrass, Deschampsia caespitosa L., tall fescue, Festuca arundinaceae Schreb. ‘Titan’, Zea mays L., plant competition, temperature stress, kinetics, Michaelis–Menten constant (K_m), glutathione reductase     

XML for Bioinformatics * Ethan Cerami * Berlin: Springer-Verlag; * ISBN: 0-387-23028-9; 304pp.; * 2005; {pound}42.50

Not until I received this book to review, did I realize thatI had another book on my shelf, ‘Web Services Essentials’,by the same author. This was a good omen. The Essentials bookwas where I first cut my teeth on notions such as XML-RPC, SOAP,WSDLs,     

Temporal variability of diversity and biomass of tintinnids (Ciliophora) in a southwestern Atlantic temperate estuary

Seasonal variations in diversity and biomass of tintinnids (Ciliophora:Tintinnida) were investigated at two fixed stations in the innerpart of the Bahía Blanca Estuary (38°42' S, 61°50'W) during an annual cycle. The variations were analysed in relationto surface temperature, salinity, transparency, solar radiationand chlorophyll a (Chl a)concentration. Biomass was calculatedin terms of biovolume and carbon units. Diversity was estimatedas the number of species and the Shannon Index (H', ln based).Density of tintinnids ranged from 100 to 7800 individuals L^–1H' ranged from 0 to 1.81. The biomass varied from 0.3 to 127.78x 10⁶ µm³ L^–1 (0.02–39.4 µg C L^–1).Density was significantly related to temperature, solar radiationand Secchi distance (P < 0.01); diversity was significantlyrelated to temperature (P < 0.01) and solar radiation (P< 0.05). Biomass was significantly related only to temperature(P < 0.01) in one of the stations. According to principalcomponents analysis (PCA) tintinnids exhibited a segregationof three groups: winter, spring–summer and autumn forthe most internal station and winter, spring and summer–autumnfor the most external station. H' values were lower than thoseobserved in other coastal systems found at about the same latitudein the northern hemisphere.