Y chromosome polymorphisms in Native American and Siberian populations: identification of Native American Y chromosome haplotypes

We have initiated a study of ancient male migrations from Siberia to the Americas using Y chromosome polymorphisms. The first polymorphism examined, a C→T transition at nucleotide position 181 of the DYS199 locus, was previously reported only in Native American populations. To investigate the origin of this DYS199 polymorphism, we screened Y chromosomes from a number of Siberian, Asian, and Native American populations for this and other markers. This survey detected the T allele in all five Native American populations studied at an average frequency of 61%, and in two of nine native Siberian populations, the Siberian Eskimo (21%) and the Chukchi (17%). This finding suggested that the DYS199 T allele may have originated in Beringia and was then spread throughout the New World by the founding populations of the major subgroups of modern Native Americans. We further characterized Native American Y chromosome variation by analyzing two additional Y chromosome polymorphisms, the DYS287 Y Alu polymorphic (YAP) element insertion and a YAP-associated A→G transition at DYS271, both commonly found in Africans. We found neither African allele associated with the DYS199 T allele in any of the Native American or native Siberian populations. However, we did find DYS287 YAP+ individuals who harbored the DYS199 C allele in one Native American population, the Mixe, and in one Asian group, the Tibetans. A correlation of these Y chromosome alleles in Native Americans with those of the DYS1 locus, as detected by the p49a/p49f (p49a,f) probes on TaqI-digested genomic DNA, revealed a complete association of DYS1 alleles (p49a,f haplotypes) 13, 18, 66, 67 and 69 with the DYS199 T allele, while DYS1 alleles 8 and 63 were associated with both the DYS199 C and T allele. Received: 18 November 1996 / Accepted: 19 May 1997     

Recent Origin of Dioecious and Gynodioecious Y Chromosomes in Papaya

Sex of dioecious and gynodioecious papayas is controlled by two slightly different Y chromosomes, Y for males and Y^h for hermaphrodites. All combinations of the Y and/or Y^h chromosomes are lethal. We investigated the features of paired dioecious X- and Y-specific bacterial artificial chromosomes (BACs) and compared their sequences to corresponding gynodioecious X- and Y-specific BACs. Numerous chromosomal rearrangements were detected between the X- and Y-specific BACs, including inversions, deletions, insertions, and duplications. DNA sequence expansion was documented on the Y BAC. Dioecious and gynodioecious X-specific BACs were virtually identical. The Y- and Y^h-specific BACs shared high degree of DNA sequence identity, but local chromosomal rearrangements were detected, as the consequence of suppression of recombination in the male specific region and the isolation of Y and Y^h chromosomes enforced by the lethal effect. Analysis of sequence divergence between three dioecious X and Y gene pairs resulted in the estimated ages of divergence from 0.6 to 2.5 million years, reinforcing the hypothesis of a recent origin of the papaya sex chromosomes. The estimated age of divergence between Y and Y^h chromosomes was approximately 73,000 years for Gene 5. Our findings indicate that Y and Y^h chromosomes evolved from a common ancestral Y chromosome, possibly prior to the origin of agriculture. The existence of a hermaphrodite Y^h chromosome is less likely to have resulted from human selection as once suggested.     

The central Siberian origin for native American Y chromosomes.

Y chromosomal DNA polymorphisms were used to investigate Pleistocene male migrations to the American continent. In a worldwide sample of 306 men, we obtained 32 haplotypes constructed with the variation found in 30 distinct polymorphic sites. The major Y haplotype present in most Native Americans was traced back to recent ancestors common with Siberians, namely, the Kets and Altaians from the Yenissey River Basin and Altai Mountains, respectively. Going further back, the next common ancestor gave rise also to Caucasoid Y chromosomes, probably from the central Eurasian region. This study, therefore, suggests a predominantly central Siberian origin for Native American paternal lineages for those who could have migrated to the Americas during the Upper Pleistocene.     

Origin and evolution of Native American mtDNA variation: a reappraisal.

The timing and number of prehistoric migrations involved in the settlement of the American continent is subject to intense debate. Here, we reanalyze Native American control region mtDNA data and demonstrate that only an appropriate phylogenetic analysis accompanied by an appreciation of demographic factors allows us to discern different migrations and to estimate their ages. Reappraising 574 mtDNA control region sequences from aboriginal Siberians and Native Americans, we confirm in agreement with linguistic, archaeological and climatic evidence that (i) the major wave of migration brought one population, ancestral to the Amerinds, from northeastern Siberia to America 20,000-25,000 years ago and (ii) a rapid expansion of a Beringian source population took place at the end of the Younger Dryas glacial phase approximately 11,300 years ago, ancestral to present Eskimo and Na-Dene populations.     

Chromosome Divergences Among American Marsupials and the Australian Affinities of the American Dromiciops

To investigate the phylogenetic relationships of living marsupials, morphometric and G-banded chromosome analyses were made in the Chilean species Dromiciops gliroides (Microbiotheria) and Thylamys elegans (Didelphimorphia). Chromosome arm lengths and patterns of G-bands were compared in at least eight bone marrow metaphase spreads in six and nine specimens, respectively. They were contrasted with those published for another 11 American and Australian genera. Three of six autosomal pairs (A1, A3, and C2) were uniquely shared by Dromiciops and some Australian species, being different in shape and G-banded patterns from those with similar total sizes in Thylamys and other South American didelphoid karyotypes. Such chromosomal correspondences suggest the past occurrence of at least three pericentric inversions. A table of character states constructed from chromosomal G-band comparisons is presented, showing that cytogenetic data agree with Szalay's (1982) hypothesis on the affinities of the South American Dromiciops with Australian marsupials.     

Cahokia: The Great Native American Metropolis

Cahokia: The Great Native American Metropolis. Biloine Whiting Young and Melvin L. Fowler. Champaign: University of Illinois Press, 2000. 366 pp.     

The Dual Origin of the Black Sea Foraminifera

Evidence is given supporting the possibility of survival in the modern Black Sea of descendents of Miocene Pontic foraminiferal populations. This evidence includes the present existence of Foraminifera in the Aral and Caspian Seas, the existence of pockets of species in the Paratethys area in waters long isolated from any seas, the existence in the Golovitza Lagoon of Foraminifera living at salinities lower than those that are thought to have existed in the Pontic Basin during its lacustrine period, and evidence from zoogeography. It is shown that there are morphological, ecological and physiological modifications in these aboriginal populations as compared to populations of the same species living in the Mediterranean. In addition to these aboriginal populations, evidence is given for three invasions of Foraminifera from the Mediterranean during geological periods when the Black and Mediterranean Seas were merged.     

Native American Y chromosomes in Polynesia: the genetic impact of the Polynesian slave trade

Since Thor Heyerdahl asserted that Polynesia was first colonized from the Americas (Heyerdahl 1950), geneticists have sought--but have not found--any evidence to support his theories. Here, Native American Y chromosomes are detected on the Polynesian island of Rapa. However, this, together with other odd features of the island's Y-chromosomal gene pool, is best explained as the genetic impact of a 19th century Peruvian slave trade in Polynesia. These findings underscore the need to account for history before turning to prehistory and the value of archival research to understanding modern genetic diversity. Although the impact of the Atlantic slave trade on the distribution of modern genetic diversity has been well appreciated, this represents the first study investigating the impact of this underappreciated episode on genetic diversity in the Pacific.     

Team Spirits: The Native American Mascot Controversy

Team Spirits: The Native American Mascot Controversy. C. Richard King and Charles Fruehling Springwood. eds. Lincoln: University of Nebraska Press, 2001. 356 pp.     

Single Origin of Sex Chromosomes and Multiple Origins of B Chromosomes in Fish Genus Characidium

Chromosome painting with DNA probes obtained from supernumerary (B) and sex chromosomes in three species of fish genus Characidium (C. gomesi, C. pterostictum and C. oiticicai) showed a close resemblance in repetitive DNA content between B and sex chromosomes in C. gomesi and C. pterostictum. This suggests an intraspecific origin for B chromosomes in these two species, probably deriving from sex chromosomes. In C. oiticicai, however, a DNA probe obtained from its B chromosome hybridized with the B but not with the A chromosomes, suggesting that the B chromosome in this species could have arisen interspecifically, although this hypothesis needs further investigation. A molecular phylogenetic analysis performed on nine Characidium species, with two mtDNA genes, showed that the presence of heteromorphic sex chromosomes in these species is a derived condition, and that their origin could have been unique, a conclusion also supported by interspecific chromosome painting with a CgW probe derived from the W chromosome in C. gomesi. Summing up, our results indicate that whereas heteromorphic sex chromosomes in the genus Characidium appear to have had a common and unique origin, B chromosomes may have had independent origins in different species. Our results also show that molecular phylogenetic analysis is an excellent complement for cytogenetic studies by unveiling the direction of evolutionary chromosome changes.     

双参数人类染色体流式分析及分选

用ＦＡＣＳＶａｎｔａｇｅ型流式细胞分选仪对人二倍体成纤维细胞的单分散染色体悬液进行双参数、双激光染色体核型分析及分选。人类染色体可分出２１个集团,除９至１２号染色体外,其余均能被单独分离。经染色体特异性探针池ＦＩＳＨ鉴定,染色体分选纯度可达９０．５％。     

土家族源流的遗传学初探

通过分析湖北恩施、湖南吉首地区土家族两个人群样本,利用14个Y染色体非重组区(NRY)单倍群分型技术对土家族的遗传结构进行了研究。分型结果结合其他地区土家族两个人群和相关民族群体进行主成分分析,并将分析结果根据不同人群的地理分布展示在地图上。然后对各主成分和单倍群进行偏相关分析来探讨它们之间的相关性。结果显示土家族主体与汉族在父系结构上比较接近,但依然有一定的区别。同时还发现龙山地区唯一保留土家语的土家族与氐羌族群有很明显的相关性,这说明土家族最早的起源可能正是氐羌民族。实验结果表明,恩施和吉首地区的大部分土家族与周边民族群体间的血缘交流频繁;而龙山和永顺的土家族更能代表土家先民的遗传结构,他们与西部氐羌族群密切相关。     

B染色体起源的研究进展

B染色体(简写为Bs)起源的传统观点是认为它起源于携带者所在物种的基因组.目前又发现了许多新的证据来推测Bs的起源.它可能具有两种起源:种内起源和种间起源(起源于另一物种的基因组),且有证据表明同一物种的Bs可能是多次起源,同时对Bs的起源机制也作了总结.认为B8起源的研究已取得了一定的进展,但要给Bs起源下一个确切的结论仍需要大量的实验证据.     

Native American Sovereignty and Natural Resource Management

The relationship between Native Americans and the Euro-American settlers has evolved from the latter seeking to end the separate identity of the former to one in which the U.S. government uses Native rights to control large-scale resource problems. This new relationship arose out of a need to control water in Western states for irrigation, but has expanded into other areas. The Navajo sheep reductions of the 1930s and 1940s may be seen as an instance of this relationship. Concerns about siltation behind the Hoover Dam justified a program that dramatically transformed the Navajo economy. A second case concerns conflict over a caribou herd in northwestern Alaska. The conflict eventually led to the Federal government taking management of fish and game on Federal lands back from the state government. Both these cases show the development of a technocracy, based on Federal trusteeship over Native resources, concerned with the control of nature similar to that observed in Wittfogel's writings on Chinese irrigation.