Benthic microalgae in coral reef sediments of the southern Great Barrier Reef,Australia

The abundance and productivity of benthic microalgae in coral reef sediments are poorly known compared with other, more conspicuous (e.g. coral zooxanthellae, macroalgae) primary producers of coral reef habitats. A survey of the distribution, biomass, and productivity of benthic microalgae on a platform reef flat and in a cross-shelf transect in the southern Great Barrier Reef indicated that benthic microalgae are ubiquitous, abundant (up to 995.0 mg chlorophyll (chl) a m^–2), and productive (up to 110 mg O₂ m^–2 h^–1) components of the reef ecosystem. Concentrations of benthic microalgae, expressed as chlorophyll a per surface area, were approximately 100-fold greater than the integrated water column concentrations of microalgae throughout the region. Benthic microalgal biomass was greater on the shallow water platform reef than in the deeper waters of the cross-shelf transect. In both areas the benthic microalgal communities had a similar composition, dominated by pennate diatoms, dinoflagellates, and cyanobacteria. Benthic microalgal populations were potentially nutrient-limited, based on responses to nitrogen and phosphorus enrichments in short-term (7-day) microcosm experiments. Benthic microalgal productivity, measured by O₂ evolution, indicated productive communities responsive to light and nutrient availability. The benthic microalgal concentrations observed (92–995 mg chl a m^–2) were high relative to other reports, particularly compared with temperate regions. This abundance of productive plants in both reef and shelf sediments in the southern Great Barrier Reef suggests that benthic microalgae are key components of coral reef ecosystems.Communicated by Environmental Editor, B.C. Hatcher     

Estuarine intertidal sandflat benthic microalgal responses to in situ and mesocosm nitrogen additions

Benthic microalgal communities are important components of estuarine food webs and make substantial contributions to coastal materials cycling. Nitrogen is generally the limiting factor for marine primary production; however other factors can limit benthic primary producers because of their access to the additional nutrients found in sediment porewater. Field and laboratory experiments were conducted to test the hypothesis that water column nitrogen supply affects estuarine sandflat benthic microalgal community structure and function. Our field and mesocosm experiments assessed changes at both the population and functional group levels. Simulated water column nitrogen additions increased maximum community photosynthesis in most cases (Pb_max from photosynthesis vs. irradiance curves). Additional changes that resulted from nitrogen additions were decreases in porewater phosphate, increases in porewater ammonium, shifts in community composition from N₂ fixing cyanobacteria toward diatoms, and detectable, though not statistically significant increases in biomass (as chlorophyll a). Results from field and laboratory experiments were quite similar, suggesting that laboratory experiments support accurate predictions of the response of intertidal benthic microalgae to changes in water column nutrient conditions.     

Behavioural versus physiological photoprotection in epipelic and epipsammic benthic diatoms

Benthic diatoms are dominant primary producers in intertidal marine sediments, which are characterized by widely fluctuating and often extreme light conditions. To cope with sudden increases in light intensity, benthic diatoms display both behavioural and physiological photoprotection mechanisms. Behavioural photoprotection is restricted to raphid pennate diatoms, which possess a raphe system that enables motility and hence positioning in sediment light gradients (e.g. via vertical migration into the sediment). The main physiological photoprotection mechanism is to dissipate excess light energy as heat, measured as Non-Photochemical Quenching (NPQ) of chlorophyll fluorescence. A trade-off between vertical migration and physiological photoprotection (NPQ) in benthic diatoms has been hypothesized before, but this has never been formally tested. We exposed five epipelic diatom species (which move in between sediment particles) and four epipsammic diatom species (which live in close association with individual sand grains) to high light conditions, and characterized both NPQ and the relative magnitude of the migratory response to high light. Our results reveal the absence of a significant downward migratory response in an araphid diatom, but also in several raphid epipsammic diatoms, while all epipelic species showed a significant migratory response upon high light exposure. In all epipsammic species the upregulation of NPQ was rapid and pronounced; NPQ relaxation in low light conditions, however, occurred faster in the araphid diatom, compared with the raphid epipsammic species. In contrast, all epipelic species lacked a strong and flexible NPQ response and showed higher susceptibility to photodamage when not able to migrate. While overall our results support the vertical migration-NPQ trade-off, the lack of strong relationships between the capacity for vertical migration and NPQ within the epipsammic and epipelic groups suggests that other factors as well, such as cell size, substrate type and photoacclimation, may influence photoprotective strategies.     

Ecosystem effects of water column minnows in experimental streams

We used red shiner (Cyprinella lutrensis) as a model to examine ecosystem effects of water column stream minnows (Cyprinidae) in experimental streams. Benthic primary productivity, benthic invertebrate abundance, water column nutrient concentrations, size distribution of benthic particulate organic matter (BPOM), and sedimentation rates were measured across a range of fish densities (0–26.6 fish m^–2) over a 35-day period. In addition, effects of fish density on algal standing crop and benthic invertebrates in experimental streams were examined over a longer time span (156 and 203 days). After 35 days, benthic primary productivity was positively associated with fish density, with an approximate three-fold increase in productivity between experimental streams stocked with no fish and those with 26.6 fish m^–2. No effects on other ecosystem properties were detected after 35 days. Additionally, there was no effect on algal standing crop after 156 or 203 days and no effect on benthic invertebrates after 203 days. Because red shiners fed primarily on terrestrial insects, this experiment suggests that water column minnows can affect primary productivity in streams by transporting nutrients from terrestrial sources to the benthic compartment of the ecosystem. However, this effect may only be important in streams or during periods when nutrients are limiting.     

Effects of sediment properties on benthic primary production in the Columbia River estuary

Effects of sediment properties on benthic primary production were investigated along transects in the intertidal regions of the Columbia River estuary. On the tidal flats, benthic diatoms were the most abundant plants, while microalgae and submergent vascular macrophytes were relatively rare. At five intensive study sites, mean rates of benthic primary production varied between 5 mg C m⁻² h⁻¹ at Clatsop Spit and 84 mg C m⁻² h⁻¹ at Youngs Bay. A regional analysis of data from these sites and from 31 less intensively studied survey sites indicated that Youngs Bay and Baker Bay were more productive than Grays Bay, Cathlamet Bay and the tidal flats in the upper estuary above these bays. This pattern corresponded to the stability and particle size distribution of the sediment in these areas. Benthic gross primary production for the total estuarine area of 410 km² was estimated to be 4895 t carbon per year and represents a mean rate of 72 g C m⁻² year⁻¹. Of the total net primary production in the estuary, benthic plants accounted for about 7%, while phytoplankton and emergent vascular plants in the marshlands contributed approximately 56% and 37%, respectively. Data from this study also suggested that physical processes related to estuarine circulation can ultimately determine the productivity of benthic plant assemblages, and minimize the regulatory and limiting effects of temperature, nutrient supply and consumption by benthic animals.     

Growth form defines physiological photoprotective capacity in intertidal benthic diatoms

In intertidal marine sediments, characterized by rapidly fluctuating and often extreme light conditions, primary production is frequently dominated by diatoms. We performed a comparative analysis of photophysiological traits in 15 marine benthic diatom species belonging to the four major morphological growth forms (epipelon (EPL), motile epipsammon (EPM-M) and non-motile epipsammon (EPM-NM) and tychoplankton (TYCHO)) found in these sediments. Our analyses revealed a clear relationship between growth form and photoprotective capacity, and identified fast regulatory physiological photoprotective traits (that is, non-photochemical quenching (NPQ) and the xanthophyll cycle (XC)) as key traits defining the functional light response of these diatoms. EPM-NM and motile EPL showed the highest and lowest NPQ, respectively, with EPM-M showing intermediate values. Like EPL, TYCHO had low NPQ, irrespective of whether they were grown in benthic or planktonic conditions, reflecting an adaptation to a low light environment. Our results thus provide the first experimental evidence for the existence of a trade-off between behavioural (motility) and physiological photoprotective mechanisms (NPQ and the XC) in the four major intertidal benthic diatoms growth forms using unialgal cultures. Remarkably, although motility is restricted to the raphid pennate diatom clade, raphid pennate species, which have adopted a non-motile epipsammic or a tychoplanktonic life style, display the physiological photoprotective response typical of these growth forms. This observation underscores the importance of growth form and not phylogenetic relatedness as the prime determinant shaping the physiological photoprotective capacity of benthic diatoms.     

Development of the initial diatom microfouling layer on antifouling and fouling-release surfaces in temperate and tropical Australia

Diatoms are a major component of the slime layers that form on artificial surfaces in marine environments. In this article, the role played by diatoms during the pioneering stages of colonization of three marine antifouling (AF) coatings, viz Intersmooth 360®, Super Yacht 800® and a fouling-release (FR) coating Intersleek 700®, was investigated. The study was conducted over three distinct seasons in two very different marine environments in Australia, ie temperate Williamstown, Victoria and tropical Cairns, Queensland. Diatom fouling occurred more rapidly on the FR coating Intersleek 700, compared to both biocidal AF paints. However, colonization by diatoms on all three coatings was generally slow during the 16-day study. Benthic diatoms do not subsist by floating around in the water column, rather they only gain the opportunity to colonize new surfaces when they either voluntarily release or are displaced from their benthic habitat, thereafter entering the water column where the opportunity to adhere to a new surface presents itself. However, once settled, fouling diatoms grow exponentially from the site of attachment, spreading out until they populate large areas of the surface. This mode of surface colonization correlates more with an ‘infection’ type, epidemiology model, a mechanism that accounts for the colonization of significant regions of the coating surface from a single fouling diatom cell, forming ‘clonal patches’. This is in comparison to the bacterial colonization of the surface, which exhibits far more rapid recruitment and growth of cells on the substratum surface. Therefore, it is hypothesized that fouling diatoms may be characterized more by their ability to adhere and grow on surfaces already modified by bacterial biofilms, rather than on their strength of adhesion. Cell morphology and the ability to avoid shear may also be an important factor.     

Quantification of diatoms in biofilms: standardisation of methods

Benthic diatoms, which often dominate marine biofilms are mostly pennate along with a few centric species that have an attached mode of life. Even though the range of diatoms in biofilms is diverse, their ecology is poorly understood because of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community structure. In this study, a nylon brush and ceramic scraper were used as tools for the removal of diatoms from 1 - 4-day-old biofilms developed on fibreglass coupons and glass microscope slides. Standardisation of methods showed that the sample volume used in the analyses had the least influence on the quantification, whereas the method of removal was critical. The nylon brush was more efficient at recovering diatoms compared to a ceramic scraper. Direct microscopic enumeration of the community in the case of glass slides indicated that scraping resulted in between 30-50% underestimation. Heterogeneity in diatom community structure between replicate samples is one possible reason for such underestimation.     

Quantification of diatoms in biofilms: Standardisation of methods

Abstract

Benthic diatoms, which often dominate marine biofilms are mostly pennate along with a few centric species that have an attached mode of life. Even though the range of diatoms in biofilms is diverse, their ecology is poorly understood because of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community structure. In this study, a nylon brush and ceramic scraper were used as tools for the removal of diatoms from 1 – 4-day-old biofilms developed on fibreglass coupons and glass microscope slides. Standardisation of methods showed that the sample volume used in the analyses had the least influence on the quantification, whereas the method of removal was critical. The nylon brush was more efficient at recovering diatoms compared to a ceramic scraper. Direct microscopic enumeration of the community in the case of glass slides indicated that scraping resulted in between 30–50% underestimation. Heterogeneity in diatom community structure between replicate samples is one possible reason for such underestimation.     

Influence of currents and waves on the whirling up of benthic diatoms living on intertidal flats

Summary Experimental observations showed that the presence of relatively dense populations of benthic diatoms in the water can be caused by water currents of relatively low velocity. However, field observations showed that wave action can strongly increase the whirling up of these populations. Observations done in the laboratory and in the field showed that benthic diatoms reached the water column together with resuspended sediment. The field observations indicated that, in contrast with the fine sediment fraction, bare parts of sand grain particles are relatively insignificant as a substrate for benthic diatoms. It is suggested that in turbid areas with extensive flats the benthic diatom populations are an important additional food source for the pelagic fauna.Publication no. 47 of Biological Research Ems-Dollard Estuary.     

Use of benthic vs planktonic organic matter by sandy-beach organisms: A food tracing experiment with C labelled diatoms

Benthic diatoms are assumed to be of minor importance as food sources in sandy-beach food webs, since they are typically scarce in sandy-beach sediments; whereas organic matter derived from land and sea is known to be more important in sandy-beach food webs. In order to test if benthic and planktonic diatoms play a minor or major role, respectively, in sandy-beach food webs, a laboratory experiment was conducted. Labelled planktonic and benthic diatoms, enriched in the stable carbon ¹³C isotope, were offered as food sources to sandy-beach macrofauna and meiofauna communities. Uptake of both types of diatoms occurred with most of the species, but benthic diatoms were preferentially consumed by two macrofaunal species and all meiofaunal species. This result reveals the importance of benthic carbon sources in both macrofaunal and interstitial food webs, and suggests a link between both food webs through the common use of benthic diatoms.     

Diatom composition and biomass variability in nearshore waters of Maxwell Bay, Antarctica, during the 1992/1993 austral summer

 Diatom composition and biomass were investigated in the nearshore water (<30 m in depth) of Maxwell Bay, Antarctica during the 1992/1993 austral summer. Epiphytic or epilithic diatoms such as Fragilaria striatula, Achnanthes brevipes var. angustata and Licmophora spp. dominated the water column microalgal populations. Within the bay, diatom biomass in surface water was several times higher at the nearshore (2.4–14 μg C l^-1) than at the offshore stations (>100 m) (1.2–3.2 μg C l^-1) with a dramatic decrease towards the bay mouth. Benthic forms accounted for >90% of diatom carbon in all nearshore stations, while in the offshore stations planktonic forms such as Thalassiosira antarctica predominated (50–>90%). Microscopic examination revealed that many of these diatoms have become detached from a variety of macroalgae growing in the intertidal and shallow subtidal bottoms. Epiphytic diatoms persistently dominated during a 19-day period in the water column at a fixed nearshore station, and the biomass of these diatoms fluctuated from 0.86 to 53 μg C l^-1. A positive correlation between diatom biomass and wind speed strongly suggests that wind-driven resuspension of benthic forms is the major mechanism increasing diatom biomass in the water column. Received: 28 April 1995/Accepted: 1 April 1996     

Scanning electron microscope evidence for diatom uptake by two Antarctic sponges

Scanning electron microscopy (SEM) investigation of two Antarctic sponges, Phorbas glaberrima and Tedania charcoti, showed that the exopinacoderm effects a direct uptake of benthic diatoms which settle on the sponge surface. In P. glaberrima, planktonic diatoms were also observed penetrating through the inhalant system, the primary way of feeding in sponges. Benthic diatoms which accumulate in the mesohyl underneath the exopinacoderm help to strengthen the sponge cortex and may be an alimentary source during oligotrophic periods in the Antarctic environment.     

Mixed populations of marine microalgae in continuous culture: Factors affecting species dominance and biomass productivity

Marine microalgae were grown in multispecies continuous cultures. Under carbon dioxide limitation, blue-green algae dominated. Under nitrate and light limitation, species dominance depended on the initial conditions. When the inoculum consisted primarily of blue-green algae with smaller amounts of other species, blue-green algae and pennate diatoms dominated. When the inoculum consisted of equal amounts of all species, green flagellates and pennate diatoms dominated. Green flagellates and blue-green algae were incompatible and never shared dominance. When nutrient limitations were overcome, the productivity of seawater was increased 100-fold before light limitation occurred. The productivity could be further increased by reducing photorespiration in the culture. The dilution rates studied (0.1, 0.2, and 0.4 day(-1)) had no effect on species dominance, nor did the higher dilution rates select for smaller cells. The maximum productivity occurred at a dilution rate of 0.2 day(-1). Temperature had the greatest effect on species dominance, with green flagellates, pennate diatoms, and blue-green algae dominating at 20 degrees C and only blue-green algae dominating at 35 degrees C. The productivity at 35 degrees C was lower than that at 20 degrees C because of the lower solubility of carbon dioxide at higher temperatures. At 10% salinity, green flagellates and pennate diatoms dominated. The productivity at this salinity was 50% that obtained at the salinity of seawater (3.5%). At 25% salinity, only the green flagellate, Dunaliella salina, survived at a productivity of 1% that obtained at the salinity of seawater.     

长江口及东海春季底栖硅藻、原生动物和小型底栖生物的生态特点

利用Ludox-QPS方法并结合沉积环境因子的综合分析,研究了2011年4月采自长江口及东海10个站位以底栖硅藻、纤毛虫和异养小鞭毛虫为代表的微型底栖生物及小型底栖生物的组成、丰度和生物量、分布及生态特点。结果表明,底栖硅藻的丰度 (5.92 ? 104 ind/10 cm2) 和生物量 (83.29 ?g C/10 cm2) 远高于纤毛虫 (丰度为1036 ind/10 cm2,生物量为3.33 ?g C/10 cm2)、异养小鞭毛虫 (丰度为4451 ind/10 cm2,生物量为2.51 ?g C/10 cm2) 和小型底栖生物 (丰度为1947 ? 849 ind/10 cm2,生物量为49.01? 22.05 ?g C/10 cm2)。在鉴定出的11个小型底栖生物类群中,线虫占小型底栖生物总丰度的90%和总生物量的37%。底栖硅藻生物量在长江口及东海海域呈由近岸向外海逐渐降低的分布特点,而底栖纤毛虫、异养小鞭毛虫及小型底栖生物的分布则正相反。在垂直分布上,76%的硅藻和80%的线虫分布在0–2 cm沉积物表层,仅1%的硅藻和6%的线虫分布在5–8 cm分层。统计分析表明,底栖硅藻的现存量与沉积物中叶绿素a含量呈极显著的正相关,与底层水温度呈弱的正相关;该海域底栖原生动物和小型底栖生物的分布受多个因子而非单一环境因子的共同作用。对比分析表明,长江口及东海单位体积沉积物中的硅藻丰度较水体中的硅藻丰度高2个数量级,沉积物中相当部分的叶绿素a含量可能系底栖硅藻所贡献;表层8 cm沉积物中纤毛虫的丰度约是上层30 m水柱中纤毛虫丰度的30倍,生物量约是后者的40倍。尽管纤毛虫在生物量上远小于小型底栖生物,但其估算的生产力约是后者的3倍;而异养小鞭毛虫由于个体更小,其周转率可能较纤毛虫更高。长江口及东海陆架区原生动物和小型底栖生物的高现存量及生产力预示着其在该海域生态系统中的重要作用。     

环境因子对河流底栖无脊椎动物群落结构的影响

底栖无脊椎动物是河流生态系统的重要组成部分,在物质循环和能量流动中是不可或缺的重要环节。其群落结构特点与河流环境因子密切相关,能较好地反映河流生态系统健康状况。综述了物理因子(底质、温度、水深、水流、洪水干扰等)、化学因子(溶氧量、p H值、磷、氮等)、生物因子(水生植物、竞争和捕食)、人为干扰(电站建设、城镇化等)和综合因子对河流底栖无脊椎动物群落结构的影响,并根据国内外研究现状指出水流、海拔和洪水干扰等环境因子对河流底栖无脊椎动物群落结构影响的研究较少或不足,对这些环境因子的研究应是今后河流生态学领域需要着力推进重要内容。深入研究和完善环境因子与底栖无脊椎动物群落结构的关系可为保护底栖无脊椎动物群落、流域水生态系统管理和受损河流生态系统修复提供更为全面的科学依据。     

THE EVOLUTION OF ELONGATE SHAPE IN DIATOMS1

Diatoms have been classified historically as either centric or pennate based on a number of features, cell outline foremost among them. The consensus among nearly every estimate of the diatom phylogeny is that the traditional pennate diatoms (Pennales) constitute a well‐supported clade, whereas centric diatoms do not. The problem with the centric–pennate classification was highlighted by some recent analyses concerning the phylogenetic position of Toxarium, whereby it was concluded that this “centric” diatom independently evolved several pennate‐like characters including an elongate, pennate‐like cell outline. We performed several phylogenetic analyses to test the hypothesis that Toxarium evolved its elongate shape independently from Pennales. First, we reanalyzed the original data set used to infer the phylogenetic position of Toxarium and found that a more thorough heuristic search was necessary to find the optimal tree. Second, we aligned 181 diatom and eight outgroup SSU rDNA sequences to maximize the juxtapositioning of similar primary and secondary structure of the 18S rRNA molecule over a much broader sampling of diatoms. We then performed a number of phylogenetic analyses purposely based on disparate sets of assumptions and found that none of these analyses supported the conclusion that Toxarium acquired its pennate‐like outline independently from Pennales. Our results suggest that elongate outline is congruent with SSU rDNA data and may be synapomorphic for a larger, more inclusive clade than the traditional Pennales.     

Distribution patterns of benthic microalgal standing stock at McMurdo Sound,Antarctica

Summary During the austral summer of 1975–76 and winter of 1977 benthic and water column chlorophyll a and phaeopigments were measured at several sites along the east and west sides of McMurdo Sound, Antarctica. Estimates of in situ primary productivity were made at some McMurdo Sound locations. Additionally, water column samples were collected at 5 stations in the Ross Sea during January, 1976. Standing stock data are analyzed to identify seasonal and spatial patterns. Variability in algal standing stock was related to ambient light levels and appeared to be mediated by ice and snow cover whereby the highest algal standing stock was present under high light conditions (low ice and snow cover, shallow water, summer). Differences in published benthic invertebrate densities appear to be closely allied to differences in benthic primary production, and less so to in situ planktonic ice microalgal production.     

Standing crop densities and distribution of Spirulina and benthic diatoms in East African alkaline saline lakes

SUMMARY. The diversity of Eastern Rift Valley alkaline saline lakes is illustrated and their temporal fluctuations in ionic concentration are emphasized.
The standing crop densities of phytoplanktonic blue-green algae of the genus Spirulina and benthic diatoms were measured. Spirulina abundance was measured as dry mass density and the validity of the gravimatric estimates was checked by chlorophyll analysis and microscopic counting. Benthic diatom standing crops were assessed by chlorophyll determinations. Spirulina density is extremely variable in time and may fluctuate over more than an order of magnitude. High density blooms of Spirulina are not a common characteristic feature of these lakes. The causes of changes in Spirulina standing crop and the associated alterations in the structure of the primary producer community are discussed and three qualitative states which may occur are described.
Similar standing crops of benthic diatoms (mean 45 mg m⁻² of chlorophyll-α) were found at all lakes wherever the water depth was shallow enough to allow light penetration to the sediment surface.     

Benthic organic matter dynamics in Texas prairie streams

Concentrations of benthic particulate organic matter (POM) in six Texas prairie streams (2nd–4th order, intermittent and perennial) were monitored over a 20 month period to determine temporal and spatial dynamics. Benthic POM mass was highly variable, having coefficients of variation (CV) in excess of 300%. Benthic POM mass in all streams was similar with the exception of the 4th order intermittent stream which had significantly higher concentrations. Benthic POM at all sites was dominated by coarse POM (CPOM), followed by fine POM (FPOM), ultrafine POM (UPOM), and medium POM (MPOM). The dominance by CPOM is especially noteworthy in the 4th order intermittent stream where it accounted for 83% of the annual POM mass. Seasonally, benthic POM was highest in summer and lowest in the fall.