β-catenin takes a HIT

Histidine triad (HIT) proteins represent a small family of nucleotide-binding and -hydrolyzing proteins, which attracted the attention of cancer biologists because their expression is lost in multiple human malignancies. To some of the family members including Fhit, Hint1 and Hint2, a tumor suppressive activity was assigned. Although highly similar in structure, their mode of action appears to be different as they are not able to compensate each other’s function. Surprisingly, in any reported assay system the enzymatic activity of the histidine triad proteins was not required for their tumor suppressor function. Until recently, little was known about the molecular mechanisms mediating the tumor suppressor activities of histidine triad proteins. The identification of new interaction partners started to shed light on the signaling pathways modulated by the HIT proteins. Here, we summarize these findings with special emphasis on the histidine triad proteins Hint1 and Fhit and their repressive activity on the β-catenin signaling function.     

Endometriosis; a review

The Billroth I gastric resection, with and without vagotomy, was used in 20 selected cases of peptic ulcer. Vagotomy and pyloroplasty is considered the operation of first choice for duodenal ulcer. The cases for Billroth I resections were selected from cases not suitable for pyloroplasty. Operations for peptic ulcer which preserve the gastrointestinal continuity are considered to be physiologically superior. Vagotomy and pyloroplasty, and Billroth I gastric resection both qualify in this regard. The postoperative digestive symptoms after Billroth I gastric resection in the present series were minimal, which tends to confirm this theoretical superiority.     

Epidemiología infecciosa en centros gerontológicos

Introduction

Infection processes in gerontology centres (GC) are one of the main causes of mortality and aggravation of concomitant chronic diseases. An epidemiological surveillance system was set up to find out their magnitude and distribution.

Material and methods

A prevalence study was conducted during the years 2006-2009 in 4 GCs of the Matia Foundation. Prevalence was measured by making an annual cut-off, recording: infection type, demographic data, risk factors and antibiotic use. The incidence was measured for two years in one GC as a pilot centre, recording: infection type and antibiotic use.

Results

The prevalence in the GCs varied between 4.8% and 6.44%. The infection incidence density in the pilot study was between 3.45-5.77 infections per 1,000 resident days. The most common infection location and in this order were, respiratory, urinary and cutaneous. The incidence of respiratory infection is more statistically significant in the presence of dysphagia, malnutrition and COPD. However, no significant relationship was seen in the incidence of urinary infection with the different risk factors analysed.

Conclusions

The frequency and repercussions of nosocomial infections in GCs demonstrate the need for intervention plans and the development of adequate prevention measures.     

QST < FST As a signature of canalization

A key aim of evolutionary biology – inferring the action of natural selection on wild species – can be achieved by comparing neutral genetic differentiation between populations (F_ST) with quantitative genetic variation (Q_ST). Each of the three possible outcomes of comparisons of Q_ST and F_ST (Q_ST > F_ST, Q_ST = F_ST, Q_ST < F_ST) is associated with an inference (diversifying selection, genetic drift, uniform selection, respectively). However, published empirical and theoretical studies have focused on the Q_ST > F_ST outcome. We believe that this reflects the absence of a straightforward biological interpretation of the Q_ST < F_ST pattern. We here report recent evidence of this neglected evolutionary pattern, provide guidelines to its interpretation as either a canalization phenomenon or a consequence of uniform selection and discuss the significant importance this issue will have for the area of evolutionary biology.     

DNA as a ‘Nanomaterial’

DNA is recognized as a nanomaterial, not as a biological material, in the research field of nanotechnology. This article reviews recent research on nanowires, nanoarchitectures, computing, aptamers, biocatalysts, devices, and machines using DNA. In these works, the characteristics of DNA including facile synthesis by the solid-phase method, self-assembly, electro-conductivity, information elements, amplification, switching, molecular recognition, and catalytic functions, were appropriately applied. Multiple functions of DNA could be used simultaneously, and activated independently, by molecular switching. Therefore, the combinations of functional sequences of DNA can produce unique materials. It is obvious that the DNA molecule is one of the most promising functional nanomaterials. However, the application of DNA molecules is still under study because of the big gap that exists between theory and practice. We eagerly anticipate a ‘coming out’ of DNA due to breakthroughs in nanobiotechnology.     

Molecular breeding of a novel <Emphasis Type="Italic">Coprinopsis cinerea</Emphasis> strain possessing a heterologous laccase gene, <Emphasis Type="Italic">lccK</Emphasis>, driven by a constitutive promoter

Genomic DNA encoding the Pleurotus ostreatus LccK laccase was fused with the Coprinopsis cinerea β-tubulin promoter and terminator, and introduced into a C. cinerea strain. Linkage analysis, native PAGE separations, substrate specificity investigations and expression profiling indicated that C. cinerea transformants secrete P. ostreatus LccK, suggesting that the introns of the lccK gene are correctly spliced and the signal peptide for secretion is functional in C. cinerea. Transformants constitutively expressing laccase may be useful for the degradation of aromatic compounds.     

Crystal structure of a secreted lipase from Gibberella zeae reveals a novel &#8220;double-lock&#8221; mechanism

Fusarium graminearum (sexual stage: Gibberella zeae) is the causative agent of Fusarium Head Blight (FHB), which is one of the most destructive plant disease of cereals, accounting for high grain yield losses, especially for wheat and maize. Like other fungal pathogens, several extracellular enzymes secreted by G. zeae are known to be involved in host infection. Among these secreted lipases, G. zeae lipase (GZEL), which is encoded by the FGL1 gene, was demonstrated to be crucial to G. zeae pathogenicity. However, the precise mechanism of GZEL remains unclear due to a lack of detailed structural information. In this study, we report the crystal structure of GZEL at the atomic level. The structure of GZEL displays distinct structural differences compared to reported homologues and indicates a unique “double lock” enzymatic mechanism. To gain insight into substrate/inhibitor recognition, we proposed a model of GZEL in complex with substrate and the lipase inhibitor ebelactone B (based on the reported structures of GZEL homologues), which defines possible substrate binding sites within the catalytic cleft and suggests an “anti sn-l” binding mode. These results pave the way to elucidating the mechanism of GZEL and thus provide clues for the design of anti-FHB inhibitors.     

Effects of a multi-year drought on a drought-adapted shrub, <Emphasis Type="Italic">Artemisia tridentata</Emphasis>

Models of climate change predict more variable precipitation for much of western North America, including more severe multi-year droughts. Droughts are known to increase mortality to trees although less is known about effects on shrubs from arid environments and about effects on reproduction. In this study, we followed a cohort of young sagebrush plants from 2010 to 2016, a period that included a severe drought from 2012 to 2015. Plants experienced little mortality preceding and during the drought. However, in the year following the drought, 14% of individuals died and 33% of branches on living plants died. There was little flowering in the years preceding the drought and flowering increased in each successive year from 2014 to 2016. Plants that produced more flowers in 2015 had more dead branches in 2016. Larger plants had fewer branches that died. Contrary to expectations, afternoon shade was not associated with greater survival or flowering, perhaps because shaded plants were in proximity to large trees which likely competed for water. Plants of the two common chemotypes had similar rates of survival and flowering. Experimental watering during the summer of 2015 did not affect survival and may have increased flowering in 2016. If multi-year droughts become more common in the future, even drought-adapted shrubs may be expected to suffer high rates of mortality.     

Reversing a ‘backwards’ motor

Ncd, a kinesin-related microtubule motor protein that moves the ‘wrong’ way on microtubules, towards the minus ends, has now been made to move like kinesin, towards plus ends, by fusing regions from outside the kinesin motor domain to the Ncd motor.^1,2 Since it is the kinesin motor domain that binds to and moves on the microtubule, the finding that regions outside the motor domain can confer directionality of Ncd movement is remarkable—it implies a structural basis for motor polarity. Here we consider this finding from a structural point of view and discuss the implications for motor function and evolution. BioEssays 20:108–112, 1998. © 1998 John Wiley & Sons, Inc.     

Effective delivery of a nematode‐repellent peptide using a root‐cap‐specific promoter

The potential of the MDK4‐20 promoter of Arabidopsis thaliana to direct effective transgenic expression of a secreted nematode‐repellent peptide was investigated. Its expression pattern was studied in both transgenic Arabidopsis and Solanum tuberosum (potato) plants. It directed root‐specific β‐glucuronidase expression in both species that was chiefly localized to cells of the root cap. Use of the fluorescent timer protein dsRED‐E5 established that the MDK4‐20 promoter remains active for longer than the commonly used constitutive promoter CaMV35S in separated potato root border cells. Transgenic Arabidopsis lines that expressed the nematode‐repellent peptide under the control of either AtMDK4‐20 or CaMV35S reduced the establishment of the beet cyst nematode Heterodera schachtii. The best line using the AtMDK4‐20 promoter displayed a level of resistance >80%, comparable to that of lines using the CaMV35S promoter. In transgenic potato plants, 94.9 ± 0.8% resistance to the potato cyst nematode Globodera pallida was achieved using the AtMDK4‐20 promoter, compared with 34.4 ± 8.4% resistance displayed by a line expressing the repellent peptide from the CaMV35S promoter. These results establish the potential of the AtMDK4‐20 promoter to limit expression of a repellent peptide whilst maintaining or even improving the efficacy of the cyst‐nematode defence.     

<Emphasis Type="Italic">Penicillium viticola</Emphasis>, a new species isolated from a grape in Japan

A new monoverticillate Penicillium species (subgenus Aspergilloides Dierckx), Penicillium viticola, was isolated from a grape cultivated in Yamanashi Prefecture, Japan. Morphologically, P. viticola is characterized by the production of slightly roughened conidia, slightly roughened stipes, and rapid growth on 25% glycerol nitrate agar (G25N). This species is phylogenetically close to Penicillium angulare S.W. Peterson, E.M. Bayer & Wicklow, but differs with respect to colonial characteristics and conidia and penicilli morphology.     

One-Step Preparation of a TA-cloning Vector from a Specially Designed Parent Plasmid Containing a Dual <Emphasis Type="Italic">lacZ</Emphasis> Gene System

A high-yield method was developed for producing a TA-cloning vector suitable for blue/white colony selection from a unique parent plasmid containing a dual lacZ gene system through a one-step restriction enzyme digestion, which creates a single-base 3′-overhang. The dual lacZ gene system was realized by inserting an inner lacZ gene between two single-base 3′-overhangs, creating restriction enzyme sites within the reading-frame-adjusted outer lacZ gene sequence in the parent plasmid. The proposed method overcomes problems, such as the inefficient digestion frequently observed when generating a TA-cloning vector and the difficulty of purifying TA-cloning vectors from the digestion mixture, while maintaining the applicability of blue/white colony selection. Moreover, the use of TA-cloning vector prepared by the proposed method can provide the distinguish tool of transformants carrying the cloning product from those carrying contaminating parent plasmids, recircularized plasmids derived from incompletely digested parent plasmid fragments, or intra-molecularly ligated TA-cloning vectors derived from T-overhangs missing TA-cloning vectors (instability of the T-overhangs is another important consideration when designing TA-cloning vectors) by making all colonies except those carrying the cloning product appear blue during blue/white colony selection.