Development of metrics based on fish body size and species traits to assess European coldwater streams

During the last decade multimetric indices (MMIs) have been greatly improved by the use of appropriate criteria to define reference conditions and by the use of statistical analysis to select a consistent set of metrics. Among the large number of MMIs developed to assess the ecological status of streams based on fish communities, the emphasis was mainly put on warmwater assemblages. When compared with warmwater fish assemblages, coldwater assemblages present depauperate faunas with a limited suit of traits. Thus, very often the number of metrics used to compute MMIs for coldwater streams is lower than for warmwaters. The objective of this study was to develop new metrics specific to European coldwater assemblages that integrate both the species traits and the body size of fish. Indeed, whereas the use of size or age classes has been highly advocated for developing MMIs, it remains largely underrepresented. Therefore, we used eight biological and ecological traits to characterize species and two size classes: small and large individuals. Among the 96 metrics tested, four were successfully related to environmental gradients and three displayed a significant response to anthropogenic pressures: the number of small rheophilous individuals, the number of small oxygen-intolerant individuals, and the number of small-habitat-intolerant individuals. These results demonstrate that metrics based on size classes could be used in the development of MMIs for coldwater streams and more generally for low-species rivers.     

A fish-based index for the assessment of the ecological quality of temperate lakes

A fish – based index for the assessment of the ecological quality of natural temperate lakes was developed, in accordance to the requirements of the Water Framework Directive (WFD) 2000/60/EC. As a case study, 11 natural lakes located at northern and western Greece were selected. Fish surveys were conducted during mid summer to mid autumn in 2010, 2011 and 2012 using Nordic gillnets and electrofishing. Environmental parameters and anthropogenic pressures were assessed for each lake. Fish species richness, abundance, trophic, reproductive and habitat functional guilds were used for extracting a set of 107 metrics, meeting the requirements of the WFD. All metrics were initially tested as candidates for the index development. A stepwise linear regression of each metric against environmental parameters (lake area, altitude, maximum depth, alkalinity) and anthropogenic pressures (drainage area covered by non-natural land uses – NNLC, water total phosphorus concentrations – TP, Lake Habitat Modification Score – LHMS) was initially conducted for ensuring pressure-response relationships. Reference conditions for each lake were estimated by the hindcasting procedure and the ecological quality for each lake was expressed as the ecological quality ratio (EQR) by a value ranging from 0 (poor quality) to 1 (excellent quality). Two fish fauna metrics, the relative numerical abundance of introduced species (Introduced_a) and the relative biomass of omnivorous species (OMNI_b) were finally extracted as the most significant, responding to LHMS and TP, respectively. The final index was expressed as the mean values of the EQRs of these two metrics. The multimetric fish index presented herein could serve as a tool for assessing the ecological quality of natural lakes at broad geographical scale and generally, in the Mediterranean temperate lakes with similar hydromorphological characteristics.     

Development of a benthic macroinvertebrate multimetric index (MMI) for Neotropical Savanna headwater streams

Assessing the ecological impacts of anthropogenic pressures is a key task in environmental management. Multimetric indices (MMIs), based on aquatic assemblage responses to anthropogenic pressures, have been used increasingly throughout the world. The MMI approach is a low-cost, rapid field method that produces an aquatic condition index that responds precisely to anthropogenic pressures, making it useful for conservation and environmental management. We developed four candidate MMIs based on benthic macroinvertebrate assemblages sampled at 40 randomly selected sites to assess the environmental condition of streams upstream of a hydroelectric power plant in the Brazilian Neotropical Savanna biome. Those MMIs were built from landscape-adjusted and unadjusted biological metrics as well as two alternative ways of choosing metrics. The alternative MMIs performances were tested by comparing their precision to distinguish least-disturbed areas, responsiveness to discriminate least- and most-disturbed areas, and sensitivity to anthropogenic pressures at catchment and local scales. The best performing MMI had landscape-adjusted metrics and was produced through use of principal component analysis for metric selection. It included 4 metrics: Ephemeroptera richness, average tolerance score per taxon, percentage of predator individuals, and percentage of Odonata individuals adjusted by elevation. This index discriminated well the anthropogenic pressures at local- and catchment-scales, and at both scales simultaneously, as indicated by an integrated disturbance index. Our methodological development included statistical criteria for identifying least- and most-disturbed sites, calibrating for natural landscape variability, and use of non-redundant metrics. Therefore, we expect it will provide a model for environmental assessment of water resources elsewhere in Brazil and in other nations.     

Fish diversity in European lakes: geographical factors dominate over anthropogenic pressures

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Macroinvertebrate-based multimetric predictive models for evaluating the human impact on biotic condition of Bolivian streams

We developed and validated a single multimetric index based on predictive models that could evaluate anthropogenic disturbances in streams of three disparate ecoregions of Bolivia. To do so, we examined 45 candidate metrics reflecting different aspects of macroinvertebrate assemblage structure and function gleaned from available literature and for their potential to indicate degradation. More importantly, we integrated functional trait metrics to improve the sensitivity of our index. To quantify possible deviation from reference conditions, we first established and validated statistical models describing metric responses to natural environmental differences in the absence of any significant anthropogenic disturbance. We considered that the residual distributions of these models described the response range of each metric, independently of natural environmental influence. After testing the sensitivity of these residuals to a gradient of anthropogenic disturbance, we retained eight metrics that were used in the final assemblage index, four metrics based on richness and composition and four metrics based on biological traits. Our index performed well in discriminating between reference and disturbed sites, giving a significant negative linear response to a gradient of physical and chemical anthropogenic disturbances. After employing a probability survey design and sampling a relatively small number of sites throughout all major ecoregions of Bolivia, we believe our methodology can be used to develop a monitoring tool to evaluate status and trends in biological condition for streams of the entire country despite its complex and heterogeneous geology and climate.     

Ecological status assessment of European lakes: a comparison of metrics for phytoplankton, macrophytes, benthic invertebrates and fish

Data on phytoplankton, macrophytes, benthic invertebrates and fish from more than 2000 lakes in 22 European countries were used to develop and test metrics for assessing the ecological status of European lakes as required by the Water Framework Directive. The strongest and most sensitive of the 11 metrics responding to eutrophication pressure were phytoplankton chlorophyll a, a taxonomic composition trophic index and a functional traits index, the macrophyte intercalibration taxonomic composition metric and a Nordic lake fish index. Intermediate response was found for a cyanobacterial bloom intensity index (Cyano), the Ellenberg macrophyte index and a multimetric index for benthic invertebrates. The latter also responded to hydromorphological pressure. The metrics provide information on primary and secondary impacts of eutrophication in the pelagic and the littoral zone of lakes. Several of these metrics were used as common metrics in the intercalibration of national assessment systems or have been incorporated directly into the national systems. New biological metrics have been developed to assess hydromorphological pressures, based on aquatic macrophyte responses to water level fluctuations, and on macroinvertebrate responses to morphological modifications of lake shorelines. These metrics thus enable the quantification of biological impacts of hydromorphological pressures in lakes.     

Trait‐based diatom functional diversity as an appropriate tool for understanding the effects of environmental changes in soda pans

Saline lakes, among the most seriously endangered ecosystems, are threatened due to climate change and human activities. One valuable feature of these environments is that they constitute areas of high biodiversity. Ecologists are, therefore, under great pressure to improve their understanding of the effects of natural and anthropogenic disturbances on the biodiversity of saline lakes. In this study, a total of 257 samples from 32 soda pans in Central Europe between 2006 and 2015 were examined. The effects of environmental variables and of geographical and limnoecological factors on functional diversity were analyzed. Furthermore, the explanatory power of the trait‐based approach was assessed, and the applicability of the indices for biomonitoring purposes was determined. It was found that low habitat heterogeneity and harsh environments lead to the selection of a small number of suitable traits, and consequently, to a naturally low level of functional diversity. Anthropogenic activities enhance diversity at functional level due to the shift toward freshwater characteristics. On the regional scale, the effects of the region and status (natural, degraded, reconstructed) on diatom functional diversity were significant and more pronounced than that of the environmental and other limnoecological factors. The degree of variance found in functional diversity ascribed to environmental variables is five times greater in the case of the application of a trait‐based approach, than when a taxonomic one is employed in the literature. Each of the tested functional diversity indices was sensitive to the most important environmental variables. Furthermore, these were type‐specific and proved to be more complex indicators than taxonomic metrics. It is possible to suggest four functional diversity indices (FGR, FRic, FDis, and FDiv) which emphasize their independence from substrate and seasonal variations for ecological status assessment and conservation planning.     

The use of aquatic vegetation in lake assessment: testing the sensitivity of macrophyte metrics to anthropogenic pressures and water quality

The relationships between aquatic vegetation, anthropogenic pressures and water quality in 83 Polish lowland lakes were analysed in order to select the best responding macrophyte metrics to be used in ecological status assessment. Several metrics describing the syntaxonomic composition, abundance and spatial structure of macrophytes were tested in three morphological lake types (deep regular-shaped, deep ribbon-shaped and shallow) separately by using the Spearman rank correlation coefficients. Among all the parameters tested, only some anthropogenic pressure parameters (the percentage share of urban areas and forests in a catchment, the pollution load from point sources) and all the water quality indicators (TP, TN, Chla, SD) were significantly correlated with most of the macrophyte metrics, although for different lake types the strength and significance of relationships varied substantially. The macrophyte metrics which best responded to anthropogenic pressures and water quality changes were: (i) in deep regular-shaped lakes: the percentage share of Chara phytocenoses and rush phytocenoses in the total phytolittoral area, the maximum depth of plant distribution and the colonisation index; (ii) in deep ribbon-shaped lakes: the hydrophytes/helophytes area ratio, the percentage share of submerged and rush phytocenoses in the total phytolittoral area; (iii) in shallow lakes: the percentage share of Chara phytocenoses and rush phytocenoses in the total phytolittoral area, and the hydrophytes/helophytes area ratio. These metrics can then be used when elaborating new or refining existing macrophyte-based methods of ecological status assessment.     

Seeking functional homogeneity: A framework for definition and classification of fish assemblage types to support assessment tools on temperate reefs

Due to their important role in the ecosystem and high economic value, there is a need to assess the effect of anthropogenic impacts on marine fish assemblages. However, this can only be achieved if variations due to natural causes are known. Moreover, while most assessment tools rely on functional traits, bottom-up habitat classification frameworks tend to use species composition. The present study proposes an innovative framework to define fish assemblage types through metric pairwise constrained k-means (MPCK-means) clustering of sites based on functional guild categories and univariate metrics, an approach that takes into account within-site variability due to the sampling method and natural causes. This was followed by a label-based ensemble clustering approach, which finds patterns that minimise information loss when integrating clustering results from individual metrics. In order to test the method, fish assemblages on 14 nearshore rocky reefs along the Portuguese coast were sampled. The final typology configuration achieved through ensemble clustering consisted of three assemblage types and maintained an average normalised mutual information of 0.605 with the individual clustering results. Nested PERMANOVA found differences among types and the most variable metrics in the face of natural variation were identified. Ultimately, a k-nearest neighbours classifier is proposed to label new sites, based only on environmental variables that are unlikely to be directly affected by the presence of anthropogenic impacts. Optimal performance for the classification model was achieved with inverse distance-weighted voting of the 4 nearest neighbours with an average classification accuracy of 96.08%.     

Fish community response to the longitudinal environmental gradient in Czech deep-valley reservoirs: Implications for ecological monitoring and management

Ecological quality assessment of non-natural water bodies is, in contrast to natural systems, less developed and requires determining biological indicators that reliably reflect environmental conditions and anthropogenic pressures. This study was motivated to propose fish indicators appropriate for assessment of reservoir ecosystems in central Europe. We analysed changes in water quality, total biomass and the taxonomic, trophic and size composition of fish communities along the longitudinal axes of four elongated, deep-valley reservoirs. Due to high nutrient inputs from their catchments, the reservoirs exhibited pronounced within-system gradients in primary productivity and water transparency. Although fish communities were similar among the reservoirs and dominated by few native species, the community structure and biomass systematically changed along the longitudinal axes of the reservoirs. The biomass and proportion of planktivores/benthivores in the fish community were highest at eutrophic sites near the river inflow and declined substantially towards deep, more oligotrophic sites close to the dam. The biomass and proportion of piscivores significantly increased downstream within the reservoirs alongside improving water quality. At species level, perch Perca fluviatilis and bream Abramis brama responded most sensitively, although in opposite directions, to the longitudinal environmental gradient. The major longitudinal changes in fish community characteristics were found to be consistent between pelagic and benthic habitats. The results of this study suggest that fish communities are appropriate indicators of eutrophication and can be used for ecological quality assessment of non-natural lentic water bodies, such as reservoirs. Moreover, our results underline the necessity to consider within-system gradients in water quality and the fish community when planning sampling programmes for deep-valley reservoirs.     

Patterns in the composition and richness of helminth communities in brown trout, Salmo trutta, in a group of reservoirs

Helminth community composition and richness were studied in brown trout, Salmo trutta , in 10 reservoirs of broadly similar age and characteristics situated close to each other in a well-defined region of south-west England. Communities were compared using cluster and ordination analyses, and possible correlations between helminth richness and a number of environmental variables were investigated. The hypothesis that the helminth communities should show high degrees of similarity and that large differences between reservoirs and a high degree of clustering would be unrecognizable was refuted. Levels of community similarity were low and comparable to those determined for helminths in salmonids in natural lakes. Trout in some reservoirs exhibited very distinctive helminth faunas and clustering of reservoirs was apparent. No single factor, including reservoir size and presence of piscivorous birds, had a predominant influence on community richness or composition but rather a multiplicity of local factors was believed to influence these parameters. The results indicate that local factors promoting distinctiveness have a greater influence on the composition and richness of fish helminth communities in lakes and reservoirs than do regional factors promoting similarity.     

Using Fish Communities to Assess Streams in Romania: Initial Development of an Index of Biotic Integrity*

Multimetric biotic indices increasingly are used to complement physicochemical data in assessments of stream quality. We initiated development of multimetric indices, based on fish communities, to assess biotic integrity of streams in two physiographic regions of central Romania. Unlike previous efforts to develop such indices for European streams, our metrics and scoring criteria were selected largely on the basis of empirical relations in the regions of interest. We categorised 54 fish species with respect to ten natural-history attributes, then used this information to compute 32 candidate metrics of five types (taxonomic, tolerance, abundance, reproductive, and feeding) for each of 35 sites. We assessed the utility of candidate metrics for detecting anthropogenic impact based on three criteria: (a) range of values taken, (b) relation to a site-quality index (SQI), which incorporated information on hydrologic alteration, channel alteration, land-use intensity, and water chemistry, and (c) metric redundancy. We chose seven metrics from each region to include in preliminary multimetric indices (PMIs). Both PMIs included taxonomic, tolerance, and feeding metrics, but only two metrics were common to both PMIs. Although we could not validate our PMIs, their strong association with the SQI in each region suggests that such indices would be valuable tools for assessing stream quality and could provide more comprehensive assessments than the traditional approaches based solely on water chemistry.     

A multi-assemblage,multi-metric biological condition index for eastern Amazonia streams

Multimetric indices (MMIs) are widely used for assessing ecosystem condition and they have been developed for a variety of biological assemblages. However, when multiple assemblages are assessed at sites, the assessment results may differ because of differing physiological sensitivities to particular stressor gradients, different organism size and guilds, and the effects of different scales of disturbances on the assemblages. Those differences create problems for managers seeking to avoid type-1 and type-2 statistical errors. To alleviate those problems, we used an anthropogenic disturbance index for selecting and weighting metrics, modeled metrics against natural variability to reduce the natural variability in metrics, and developed an MMI based on both fish and aquatic insect metrics. We evaluated eight different ways of calibrating and combining candidate metrics and found that MMIs with unweighted and modeled aquatic insect and fish metrics were the preferred MMI options.     

Effect of recreational-fisheries management on fish biodiversity in gravel pit lakes,with contrasts to unmanaged lakes

Gravel pit lakes are novel ecosystems that can be colonized by fish through natural or anthropogenic pathways. In central Europe, many of them are managed by recreational anglers and thus experience regular fish stocking. However, also unmanaged gravel pits may be affected by stocking, either through illegal fish introductions or, occasionally, by immigration from connected water bodies. We sampled 23 small (< 20 ha) gravel pit lakes (16 managed and 7 unmanaged) in north-western Germany using littoral electrofishing and multimesh gillnets. Our objective was to compare the fish biodiversity in gravel pit lakes in the presence or absence of recreational fisheries. Given the size of the sampled lakes, we expected species poor communities and elevated fish diversity in the managed systems due to regular stocking of game fish species. Our study lakes were primarily mesotrophic and did not differ in key abiotic and biotic environmental characteristics. Lakes of both management types hosted similar fish abundances and biomasses, but were substantially different in terms of fish community structure and species richness. Fish were present in all lakes, with a minimum of three species. Higher α-diversity and lower β-diversity was discovered in managed gravel pit lakes compared to unmanaged lakes. Consequently, recreational-fisheries management fostered homogenization of fish communities, by stocking a similar set of fish species desired by anglers such as piscivorous fish and large bodied cyprinids. However, unmanaged gravel pit lakes were also affected by human-mediated colonization, presumably by illegal fish releases. Hardly any non-native species were detected, suggesting that recreational-fisheries management did not foster the spread of exotic species in our study region.     

Global warming and potential shift in reference conditions: the case of functional fish-based metrics

The reference condition approach, advocated by the Water Framework Directive, is the basis of most currently used multimetric indices using functional traits of fish species. The ecological status of streams is assessed by measuring the deviation of the observed trait values from the theoretical values of reference conditions in the absence of anthropogenic disturbances. While reference conditions serve as baselines for ecological assessment, they vary with natural environmental conditions. Therefore, global warming appears to be a major threat to the use of current indices for diagnosing future stream conditions, as climate change is projected to modify assemblage composition, suggesting that the functional structure of fish assemblages will also be affected. The main objectives of this study are to assess the potential effect of climate change on the trait composition of fish assemblages and the consequences for the establishment of reference conditions. The results highlight the relation between environmental, especially climatic, conditions and functional traits and project the effects of climate change on trait composition. Traits based on species intolerance are expected to be most negatively affected by the projected climatic shift. The consequences for the development of multimetric indices based on fish functional traits are discussed.     

Incorporating natural variability in the bioassessment of stream condition in the Atlantic Forest biome,Brazil

Most bioassessment programs in Brazil face difficulties when scaling up from small spatial scales because larger scales usually encompass great environmental variability. Covariance of anthropogenic pressures with natural environmental gradients can be a confounding factor in the evaluation of biologic responses to anthropogenic pressures. The objective of this study was to develop a multimetric index (MMI) with macroinvertebrates for two stream types and two ecoregions in the Atlantic Forest biome in Rio de Janeiro state, Brazil. We hypothesized that by using two approaches – (1) testing and adjusting metrics to landscape parameters, and (2) selecting metrics using a cluster analysis to avoid metrics redundancy – the final MMI would perform better than the traditional approach (unadjusted metrics, one metric representing each category). Four MMIs were thus developed: MMI-1 – adjusted MMI with metrics selected after cluster analysis); MMI-2 – adjusted MMI with one metric from each category; MMI-3 – unadjusted MMI with metrics selected after cluster analysis; MMI-4 – unadjusted MMI with one metric from each category. We used three decision criteria to assess MMI’s performance: precision, responsiveness and sensitivity. In addition, we tested the MMI’s by using an independent set of sites to validate the results. Although all MMIs performed well in the three criteria, adjusting metrics to natural variation increased MMI response and sensitivity to impairment. In addition, the selected MMI-2 was able to classify sites of two stream types and two ecoregions. The use of cluster analysis, however, did not avoid high redundancy between metrics of different branches. The MMI-4 had the poorest performance among all tested MMIs and it was not able to distinguish adequately reference and impaired sites from both ecoregions. We present some considerations on the use of metrics and on the development of MMI’s in Brazil and elsewhere.     

Effects of natural hydrological variability on fish assemblages in small Mediterranean streams: Implications for ecological assessment

Small Mediterranean streams are shaped by predictable seasonal events of flooding and drying over an annual cycle, and present a strong inter and intra-annual variation in flow regime. Native fish assemblages in these streams are adapted to this natural environmental variability. The distinction of human-induced disturbances from the natural ones is thus a crucial step before assessing the ecological status of these streams. In this aim, the present study evaluates the effects of natural hydrological variability on fish assemblages from disturbed and least disturbed sites in small intermittent streams of south Portugal. Data were collected over the last two decades (1996–2011) in 14 sites located in the Guadiana and Sado river basins. High variability of fish assemblages was strongly dependent on human-induced disturbances, particularly nutrient/organic load and sediment load, and on natural hydrological variability. Natural hydrological variability can act jointly with anthropogenic disturbances, producing changes on fish assemblages structure of small intermittent streams. In least disturbed sites, despite the natural disturbances caused by inter-annual rainfall variations (including drought and flood events), fish assemblages maintained a long-term stability and revealed a high resilience. On the contrary, disturbed sites presented significantly higher variability on fish assemblages and a short and long-term instability, reflecting a decrease on the resistance and resilience of fish assemblages. Under these conditions, fish fauna integrity is particularly vulnerable and the ecological assessment may be influenced by natural hydrological variations. High hydrological variability (especially if it entails high frequency of dryer years and meaningful cumulative water deficit) may affect the impact of the human pressures with significant and consistent consequences on fish assemblage composition and integrity. In this study, fish metrics that maximize the detection of human degradation and minimize the response to natural variability were based on the relative abundance of native species (insectivorous species, eurytopic species, water column species, native lithophilic species), relative abundance of species with intermediate tolerance and relative number of exotic species. Results highlight the importance of assessing temporal variability on stream biomonitoring programs and emphasize the need to improve the assessment tools, accounting for long-term changes in fish assemblages, namely by selecting the most appropriate fish metrics that respond to anthropogenic disturbances but exhibit low natural temporal variability, essential both in the characterization of the biological reference conditions and in the development of fish indexes in intermittent streams.     

Fish community comparisons along environmental gradients in lakes of France and north-east USA

Aim  To assess whether eight traits of fish communities (species richness, three reproductive traits and four trophic traits) respond similarly to environmental gradients, and consequently display convergence between the lakes of France and north-east USA (NEUSA).
Location  75 French and 168 north-east USA lakes.
Methods  The data encompass fish surveys, the assignment of species into reproductive and trophic guilds, and environmental variables characterizing the lakes and their catchments. The analytical procedure was adapted from the recommendations of Schluter (1986 ) [ Ecology , 67 , 1073–1085].
Results  The comparison of the regional pools of lacustrine fishes indicated that NEUSA was about twice as speciose as France, mostly due to higher species turnover across lakes, although NEUSA lakes were consistently about 20% more speciose than French lakes for a given surface area. Warmer environments were consistently inhabited by a higher proportion of phytophilous and guarder species than were colder lakes. Hence there was convergence in community reproductive traits. Conversely, there was no evidence of convergence in the trophic structure of lacustrine fish communities between regions.
Main conclusions  The influence of temperature on the availability and quality of spawning substrates appears to be a major constraint on present-day lacustrine fish communities. In parallel, phylogenetic constraints, past events such as the diversification of the North American fish fauna, and selective extinctions during Pleistocene glaciations and subsequent recolonizations contribute to explaining the dissimilarities between the communities of the two regions and differences in their relationship to the environment.     

Native and introduced fish species richness in French lakes: local and regional influences

Aim To analyse the importance of local and regional influences on the patterns of species richness in natural and man‐made lakes and to infer the impacts of human‐mediated introductions on these patterns. Location France. Methods Species occurrence data were gathered for 25 natural and 51 man‐made lakes. Analysis is based on regression models of local richness against their related regional richness and lake environmental variables. Results Local native richness was mostly controlled by the regional richness. Conversely, local total richness was mainly explained by local variables. These statements apply to both natural and man‐made lakes. Lacustrine systems displayed weak resistance to invaders. Main conclusions Species introductions have apparently contributed to saturate fish communities in these systems even if no clear negative effect on the survival of native species (i.e. species extinction) is detectable so far.     

The Influence of Biotic and Abiotic Factors on Psammic Rotifers in Artificial and Natural Lakes

The effect of sand grain size, porosity and the abundance of algae on the community structure of psammic rotifers was tested in three anthropogenic lakes (Upper Silesia) and compared with three natural ones (West Pomerania). The structure of grain size in the studied beaches of artificial and natural lakes was similar but differences were found in the abundance of algae. The structure of the psammic rotifer community in Upper Silesian lakes was different from natural lakes in West Pomerania. The structure of psammic rotifer communities in anthropogenic reservoirs and lakes (West Pomerania) differed in numbers of species and numbers of psammobiont species, and also diversity index. The most altered structure of rotifer assemblages was observed in the psammon rotifers of the strongly contaminated Dzierżno Duże Lake.