Molecular phylogenetics, karyotypic diversity, and partition of the genus Myotis (Chiroptera: Vespertilionidae)

Nucleotide sequences of the mitochondrial cytochrome b gene are reported from bats of the genus Myotis including species of the endemic southern African subgenus Cistugo, Myotis (Cistugo) sebrai and Myotis (Cistugo) lesueuri. We also examined Myotis annectans from Southeast Asia, and Myotis macropus from Australia. The two species of Cistugo and Myotis annectans represent the only species of Myotis to differ in chromosome number from the common 2n=44 found in >40 species. Our results show that the two species of Cistugo are more divergent from the other species of Myotis than several other well-recognized genera and we recommend elevating Cistugo to full generic rank. Myotis annectans groups well within Myotis, clustering with other Southeast Asian and Japanese species, and thus represents the only species of Myotis known to have diverged from the common 2n=44 karyotype. Myotis macropus clusters within a clade that includes Southeast Asian species.     

Molecular phylogeography and genetic diversity of East Asian goats

The domestic goat is one of the most important livestock species, but its origins and genetic diversity still remain uncertain. Multiple highly divergent maternal lineages of goat have been reported in previous studies. Although one of the mitochondrial DNA lineages, lineage B, was detected only in eastern and southern Asia, the geographic distribution of these lineages was previously unclear. Here, we examine the genetic diversity and phylogeographic structure of Asian goats by mitochondrial DNA sequences and morphological characteristics. The analyses of a total of 1661 Asian goats from 12 countries revealed a high frequency of lineage B in Southeast Asia. The frequency of this lineage tended to be higher in mountain areas than in plain areas in Southeast Asian countries, and there was a significant correlation between its frequency and morphological traits. The results suggest an original predominance of lineage B in Southeast Asia and the recent infiltration of lineage A into Southeast Asian goats.     

First hominoid from the Late Miocene of the Irrawaddy Formation (Myanmar)

For over a century, a Neogene fossil mammal fauna has been known in the Irrawaddy Formation in central Myanmar. Unfortunately, the lack of accurately located fossiliferous sites and the absence of hominoid fossils have impeded paleontological studies. Here we describe the first hominoid found in Myanmar together with a Hipparion (s.l.) associated mammal fauna from Irrawaddy Formation deposits dated between 10.4 and 8.8 Ma by biochronology and magnetostratigraphy. This hominoid documents a new species of Khoratpithecus, increasing thereby the Miocene diversity of southern Asian hominoids. The composition of the associated fauna as well as stable isotope data on Hipparion (s.l.) indicate that it inhabited an evergreen forest in a C3-plant environment. Our results enlighten that late Miocene hominoids were more regionally diversified than other large mammals, pointing towards regionally-bounded evolution of the representatives of this group in Southeast Asia. The Irrawaddy Formation, with its extensive outcrops and long temporal range, has a great potential for improving our knowledge of hominoid evolution in Asia.     

Zoogeography of the Southeast Asian Rotifera

The distribution and taxonomic composition of Rotifera in Southeast Asia is reviewed. For some countries, records are poor: Brunei, Cambodia and Laos are almost terra incognitafor rotifers (<10 taxa recorded), while the Thai rotifer fauna is the best documented (ca. 310 taxa on record). However, analysis of the available data is impeded by fuzzy taxonomy and the questionable reliability of many records. Most studies focus on the pelagic or littoral of freshwater habitats. Other habitats are largely ignored. Similarly, few studies deal comprehensively with illoricate Monogononta, sessile Flosculariacea and Collothecacea and, especially, Bdelloidea. The genera Lecane, Brachionus and Trichocerca are the best represented, with littoral taxa predominant. Fisheries-related studies dealing with highly productive pelagic environments tend to over report the contribution of Brachionus. Most taxa are thermophilic character, exemplified by the dominance of tropic-centred Lecaneand Brachionus. Some cold-water taxa have been recorded, but the relative climatological homogeneity of the region and low number of studies on high-altitude environments prevent the discrimination of clear latitudinal or altitudinal variation in the distribution of rotifers within Southeast Asia. The majority of Southeast Asian rotifers are widely distributed, including true cosmopolites and thermophilic taxa. There are several local or Oriental endemic Rotifera, mostly Lecane. The American Brachionus havanaensis and Keratella americana appear to have been introduced to the region. The taxonomy of some Rotifera described from the region is commented upon; Brachionus murphyiSudzuki is recognised as senior synonym of B. niwati Sanoamuang et al. (syn. nov.). Some cases of geographical and/or ecological vicariant species-pairs are suggested. The Southeast Asian rotifer fauna contains a sizeable fraction of taxa occurring in the tropical regions of the Old World, most of which also occur in tropical Australia or the Austro-Malayan region. A tropical Australasian faunal component is present, but consists of few taxa only. Hence, affinities between the rotifer fauna of the Ethiopian, Oriental and tropical Australian and Austro-Malayan regions are supported, rather than an affinity between the Indo-Asian or Indo-Malaysian and tropical Australian fauna.     

Taxonomic composition and zoogeographic characteristics of the flea fauna (Siphonaptera) of Russia

255 species and 59 subspecies of fleas from 55 genera of 7 families are known from Russia, which is 30% of the Palaearctic fauna. Additionally, over 187 species of 47 genera from 7 families are known from the neighboring territories of Central and Southern Europe, Transcaucasia, Kazakhstan, Middle Asia, Mongolia, Northeast China, and Japan. 13 species of 12 genera are known only from Russia. Noteworthy is the low percent of endemic species (not more than 4%) and genera (one genus) in the Russian fauna. The principal centers of taxonomic diversity in the Palaearctic, including many endemic species and genera, lie in the Eastern Asian, Central Asian, and Turano-Iranian Subregions, outside Russia and the Euro-Siberian Subregion. The bulk of the Russian fauna is formed by the species and genera of the three largest flea families: Hystrichopsyllidae, Ceratophyllidae, and Leptopsyllidae. The family Ceratophyllidae has the greatest number of genera in the Russian fauna, and Hystrichopsyllidae, the greatest number of species. Western (Western and Western-Central Palaearctic; 84 species from 41 genera of 7 families) and Eastern (Central-Eastern and Eastern Palaearctic; 78 species from 42 genera of 6 families) species are nearly equally represented in the Russian fauna.     

Mitochondrial sequence data reveals the phylogeny of the Asian Helice group of crabs (Decapoda: Brachyura: Varunidae)

The taxonomy of the Helice s. l. crabs has been recently revised, subdividing the Asian species in three genera, Helice , Helicana and Pseudohelice . The last one is widespread throughout the Indo-West Pacific Ocean and a single species, Pseudohelice subquadrata , is found in Asia. The other two genera appear to be endemic to Asia. However, phylogenetic affinities among the Asian representatives of Helice s. l. are poorly understood, and different morphology-based hypotheses of relationships remain untested. In this study, we used sequence data from a mitochondrial gene-block spanning three different genes [16S rDNA- trnL ₁ - IGS -nad1 ] to perform phylogenetic analyses. The results provide independent molecular evidence supporting the splitting of the Asian species into Helice and Helicana . Helice is suggested to be paraphyletic with respect to P. subquadrata . In addition, the heterogeneity of the genus Pseudohelice is shown when including the East Asian and East African counterparts. We propose that the two genera, Helice and Pseudohelice , are not monophyletic in their current composition.     

Polyphyly of Asian Tree Toads,Genus Pedostibes Günther, 1876 (Anura: Bufonidae), and the Description of a New Genus from Southeast Asia

The Asian Tree Toad genus Pedostibes, as currently understood, exhibits a conspicuously disjunct distribution, posing several immediate questions relating to the biogeography and taxonomy of this poorly known group. The type species, P. tuberculosus and P. kempi, are known only from India, whereas P. hosii, P. rugosus, and P. everetti are restricted to Southeast Asia. Several studies have shown that these allopatric groups are polyphyletic, with the Indian Pedostibes embedded within a primarily South Asian clade of toads, containing the genera Adenomus, Xanthophryne, and Duttaphrynus. Southeast Asian Pedostibes on the other hand, are nested within a Southeast Asian clade, which is the sister lineage to the Southeast Asian river toad genus Phrynoidis. We demonstrate that Indian and Southeast Asian Pedostibes are not only allopatric and polyphyletic, but also exhibit significant differences in morphology and reproductive mode, indicating that the Southeast Asian species’ are not congeneric with the true Pedostibes of India. As a taxonomic solution, we describe a new genus, Rentapia gen. nov. to accommodate the Southeast Asian species.     

Evaluating trans-tethys migration: an example using acrodont lizard phylogenetics

A phylogenetic tree for acrodont lizards (Chamaeleonidae and Agamidae) is established based on 1434 bases (1041 informative) of aligned DNA positions from a 1685-1778 base pair region of the mitochondrial genome. Sequences from three protein-coding genes (ND1, ND2, and COI) are combined with sequences from eight intervening tRNA genes for samples of 70 acrodont taxa and two outgroups. Parsimony analysis of nucleotide sequences identifies eight major clades in the Acrodonta. Most agamid lizards are placed into three distinct clades. One clade is composed of all taxa occurring in Australia and New Guinea; Physignathus cocincinus from Southeast Asia is the sister taxon to the Australia-New Guinea clade. A second clade is composed of taxa occurring from Tibet and the Indian Subcontinent east through South and East Asia. A third clade is composed of taxa occurring from Africa east through Arabia and West Asia to Tibet and the Indian Subcontinent. These three clades contain all agamid lizards except Uromastyx, Leiolepis, and Hydrosaurus, which represent three additional clades of the Agamidae. The Chamaeleonidae forms another clade weakly supported as the sister taxon to the Agamidae. All eight clades of the Acrodonta contain members occurring on land masses derived from Gondwanaland. A hypothesis of agamid lizards rafting with Gondwanan plates is examined statistically. This hypothesis suggests that the African/West Asian clade is of African or Indian origin, and the South Asian clade is either of Indian or Southeast Asian origin. The shortest tree suggests a possible African origin for the former and an Indian origin for the latter, but this result is not statistically robust. The Australia-New Guinea clade rafted with the Australia-New Guinea plate and forms the sister group to a Southeast Asian taxon that occurs on plates that broke from northern Australia-New Guinea. Other acrodont taxa are inferred to be associated with the plates of Afro-Arabia and Madagascar (Chameleonidae), India (Uromastyx), or southeast Asia (Hydrosaurus and Leiolepis). Introduction of different biotic elements to Asia by way of separate Gondwanan plates may be a major theme of Asian biogeography. Three historical events may be responsible for the sharp faunal barrier between Southeast Asia and Australia-New Guinea, known as Wallace's line: (1) primary vicariance caused by plate separations; (2) secondary contact of Southeast Asian plates with Eurasia, leading to dispersal from Eurasia into Southeast Asia, and (3) dispersal of the Indian fauna (after collision of that subcontinent) to Southeast Asia. Acrodont lizards show the first and third of these biogeographic patterns and anguid lizards exhibit the second pattern. Modern faunal diversity may be influenced primarily by historical events such as tectonic collisions and land bridge connections, which are expected to promote episodic turnover of continental faunas by introducing new faunal elements into an area. Repeated tectonic collisions may be one of the most important phenomena promoting continental biodiversity. Phylogenetics is a powerful method for investigating these processes.     

Diversity and biogeographical relationships of the Australian cestode fauna

The Australian cestode fauna remains poorly documented with a total of 342 species recorded to date. The best-studied host groups are the elasmobranchs and the marsupials, but even in these groups, only 32 and 25% of known host species, respectively, have been examined for parasites. Overall, cestodes have been reported from only 5% of the known vertebrate species. Representatives of virtually all cestode orders and most of the cyclophyllidean families have been recorded from Australia. In spite of these deficiencies, some biogeographical patterns are discernible. In the elasmobranchs, a significant proportion of the known cestodes is endemic while other associations exist with eastern Pacific and Indo-west Pacific faunas. Also identifiable is a group of cosmopolitan species. The nematotaeniids of amphibians suggest Gondwanan affiliations, while the known proteocephalideans, parasitic in reptiles and amphibians, may represent an Asian invasion. Associations of the avian cestodes represent an unexplored but potentially rewarding avenue of biogeographical study. The cestodes of mammals include families with a Gondwanan distribution (Linstowiidae, Hymenolepididae) as well as those (Anoplocephalidae) with an apparent origin in southeast Asia. In addition, a number of genera of cyclophyllidean cestodes (Anoplotaenia, Dasyurotaenia) occurring in marsupials represent biogeographical challenges, not being accommodated within any of the known cestode families. The Australian cestode fauna therefore provides potentially outstanding opportunities for studies of the biogeographical relationships of a number of cestode groups.     

A review of theropod dinosaurs from the Late Jurassic to mid-Cretaceous of Southeast Asia

Several non-avian theropod dinosaurs, as well as some Mesozoic birds, have been reported from Southeast Asia. The fossils are dominantly found in northeastern Thailand, however, one bizarre theropod has been described from Laos, one theropod has been reported from Malaysia, and some avian and non-avian theropods have been recently reported from Myanmar. The temporal distribution of Southeast Asian theropods ranges from the Late Jurassic to the mid-Cretaceous. All non-avian theropod faunas from Southeast Asia consist of non-maniraptoran tetanurans. They show similarity to Chinese plus Japanese theropods during the Early Cretaceous in broad systematic terms. During this time, megaraptorans can be found only in Japan, Australia, Brazil, and possibly Thailand, whereas tyrannosauroids can be found in China, Europe, possibly Brazil and Australia. Spinosaurids, carcharodontosaurians, and some coelurosaurs such as ornithomimosaurs were almost cosmopolitan. Metriacanthosaurids, on the other hand, were endemic to Europe and Asia including China and Thailand during the Middle to Late Jurassic.     

Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes

Molecular anthropological studies of the populations in and around East Asia have resulted in the discovery that most of the Y-chromosome lineages of East Asians came from Southeast Asia. However, very few Southeast Asian populations had been investigated, and therefore, little was known about the purported migrations from Southeast Asia into East Asia and their roles in shaping the genetic structure of East Asian populations. Here, we present the Y-chromosome data from 1,652 individuals belonging to 47 Mon-Khmer (MK) and Hmong-Mien (HM) speaking populations that are distributed primarily across Southeast Asia and extend into East Asia. Haplogroup O3a3b-M7, which appears mainly in MK and HM, indicates a strong tie between the two groups. The short tandem repeat network of O3a3b-M7 displayed a hierarchical expansion structure (annual ring shape), with MK haplotypes being located at the original point, and the HM and the Tibeto-Burman haplotypes distributed further away from core of the network. Moreover, the East Asian dominant haplogroup O3a3c1-M117 shows a network structure similar to that of O3a3b-M7. These patterns indicate an early unidirectional diffusion from Southeast Asia into East Asia, which might have resulted from the genetic drift of East Asian ancestors carrying these two haplogroups through many small bottle-necks formed by the complicated landscape between Southeast Asia and East Asia. The ages of O3a3b-M7 and O3a3c1-M117 were estimated to be approximately 19 thousand years, followed by the emergence of the ancestors of HM lineages out of MK and the unidirectional northward migrations into East Asia.     

Southeast Asian biodiversity: an impending disaster

Southeast Asia has the highest relative rate of deforestation of any major tropical region, and could lose three quarters of its original forests by 2100 and up to 42% of its biodiversity. Here, we report on the current state of its biota and highlight the primary drivers of the threat of extinction now faced by much of the unique and rich fauna and flora of the region. Furthermore, the known impacts on the biodiversity of Southeast Asia are likely to be just the tip of the iceberg, owing to the paucity of research data. The looming Southeast Asian biodiversity disaster demands immediate and definitive actions, yet such measures continue to be constrained by socioeconomic factors, including poverty and lack of infrastructure. Any realistic solution will need to involve a multidisciplinary strategy, including political, socioeconomic and scientific input, in which all major stakeholders (government, non-government, national and international organizations) must participate.     

Phylogeny of the Asian Eutropis (Squamata: Scincidae) reveals an 'into India' endemic Indian radiation

Recent generic rearrangement of the circumtropical distributed skink genus 'Mabuya' has raised a lot of debate. According to this molecular phylogeny based rearrangement, the tropical Asian members of this genus have been assigned to Eutropis. However, in these studies the Asian members of 'Mabuya' were largely sampled from Southeast (SE) Asia with very few species from Indian subcontinent. To test the validity of this assignment and to determine the evolutionary origin of Indian members of this group we sequenced one nuclear and two mitochondrial genes from most of the species from the Indian subregion. The nuclear and mitochondrial trees generated from these sequences confirmed the monophyly of the tropical Asian Eutropis. Furthermore, in the tree based on the combined mitochondrial and nuclear dataset an endemic Indian radiation was revealed that was nested within a larger Asian clade. Results of dispersal-vicariance analysis and molecular dating suggested an initial dispersal of Eutropis from SE Asia into India around 5.5-17 million years ago, giving rise to the extant members of the endemic Indian radiation. This initial dispersal was followed by two back dispersals from India into SE Asia. We also discuss the relationships within the endemic Indian radiation and its taxonomic implications.     

The species composition of rotifers in the water reservoirs of Central Vietnam

The rotifer fauna has been studied in four water reservoirs in the Khanh Hoa Province, Central Vietnam. A total of 65 species and subspecies and 22 genera representing 15 families have been found; 25 species and subspecies are identified as new to Vietnam. Morphometric characteristics are given for Filinia camascela Myers, Brachionus donneri Brehm, and B. dichotomus reductus Koste et Shiel. The rotifer fauna of Central Vietnam and those of other countries of Southeast Asia are compared. Some of the tropical and subtropical species recorded have been repeatedly reported from Russia.     

The freshwater Calanoida (Crustacea: Copepoda) of Thailand

14 Species of freshwater Calanoida in Thailand are reported in this study. The most common species is Neodiaptomus botulifer. Most of these belong to the Southeast Asian species, the remainder are either Indian or East Asian copepods. The zoogeographical demarcation of copepods in Thailand is not very distinct due to its interconnecting riverine and reservoir systems as well as frequent flood. The peculiarity of the Thai Calanoida and their distribution is discussed in a Southeast Asia context. A taxonomic key to the Thai Calanoida is formulated.     

Research priorities for bat conservation in Southeast Asia: a consensus approach

Southeast Asia is a critical area for biodiversity conservation; levels of species richness and endemism are among the highest in the world, but rapid land-use changes endanger much of the region’s fauna. Bats are a critical component of this diversity, comprising nearly a third of Southeast Asia’s mammal species and providing vital ecological and economic services. However, nearly half the species are of conservation concern and as many as 40% of bat species are predicted to be extinct by the end of this century if current deforestation rates persist. Conservation efforts are urgently needed, and the taxonomic continuity of Southeast Asia and the prevalence of major threats throughout suggest that a region-wide initiative could be an effective approach. The Southeast Asian Bat Conservation Research Unit (SEABCRU) was established in 2007 to provide an organizational framework to both accelerate the advancement of bat research, and to coordinate conservation efforts. The SEABCRU is an informal collaboration among institutes, NGOs and individuals and provides a web-based forum for the growing number of researchers and outreach workers to interact and coordinate activities. It was launched at the 1st International Southeast Asian Bat Conference in Thailand (May 2007), during which a forum was held to derive conservation research priorities using a consensus approach. Four priorities were identified by participants: flying fox conservation and monitoring, taxonomy, conservation of cave-dependent bats, and conservation of forest-dependent bats. Here I provide an overview of the rationales behind these priorities and list the specific recommendations for the actions identified.     

Stone artifacts and hominins in island Southeast Asia: new insights from Flores, eastern Indonesia

This study reexamines the current understanding of Pleistocene stone-artifact assemblages in island Southeast Asia. A differentiation has long been made between assemblages of large-sized "core tools" and assemblages of small-sized "flake tools." "Core tool" assemblages are often argued to be the handiwork of early hominin species such as Homo erectus, while small-sized "flake tool" assemblages have been attributed to Homo sapiens. We argue that this traditional Southeast Asian perspective on stone tools assumes that the artifacts recovered from a site reflect a complete technological sequence. Our analyses of Pleistocene-age artifact assemblages from Flores, Indonesia, demonstrate that large pebble-based cores and small flake-based cores are aspects of one reduction sequence. We propose that the Flores pattern applies across island Southeast Asia: large-sized "core tool" assemblages are in fact a missing element of the small-sized flake-based reduction sequences found in many Pleistocene caves and rock-shelters. We conclude by discussing the implications of this for associating stone-artifact assemblages with hominin species in island Southeast Asia.     

Acrosomal actin bundles of Asian and American horseshoe crab sperm differ in protein composition

Acrosomal actin bundles were isolated from the sperm of horseshoe crabs from four different sources, three from Asia and one from North America, and their protein constituents and structures were compared. The bundle from the American Limulus polyphemus sperm was composed of actin and two associated proteins of MW 95,000 and MW 52,000, as reported previously (Tilney, L. G. (1975) J. Cell Biol. 64, 289-310). However, those from the three Asian species (Tachypleus tridentatus, T. gigas, and Carcinoscorpius rotundicauda) were composed only of actin and the protein of MW 95,000. Electron microscopic and optical diffraction studies indicated that both the helical structures and the interfilament spacing of the actin filaments composing the acrosomal bundle were indistinguishable among the four species. These results suggest that the MW 95,000 protein crosslinks actin filaments in the bundle. Moreover, they support the idea that Limulus and the three Asian species have evolved independently from a common ancestor.     

舟翅桐属(锦葵科、梧桐亚科),中国植物一新分布属及保护建议

【目的】报道了云南省勐腊县中老边境地区舟翅桐属（Pterocymbium R. Br.）及其属下热带落叶大乔木——大花舟翅桐（P. macranthum Kosterm.）在中国的分布新记录,并提供了保护建议。该物种在历史上仅见分布于缅甸中南部和泰国北部、西南部,在中国的发现将其分布区向北扩展至热带亚洲北缘,有助于深入理解中国与东南亚热带森林树木区系之间的关系。【方法】利用体视显微镜对其境内雌株标本进行解剖观察和研究,用数码相机对关键分类特征进行了拍摄记录,并借此完善了其属和种的描述。利用无人机航拍对大花舟翅桐境内种群进行了规模快速评估,访谈当地人对其用途和木材贸易情况的认知,并结合作者在东南亚植物调查经验对其IUCN物种受威胁等级进行评估。【结果】大花舟翅桐在中国境内约有1 000株,分布区面积约2 000 hm2,评定为IUCN红色物种名录易危（VU）物种。【结论】舟翅桐属为中国新记录属,属下大花舟翅桐为中国新记录种。