两株假单胞菌对吡啶和喹啉的生物降解

【目的】探究2株假单胞菌(Pseudomonas)对吡啶和喹啉的降解。【方法】基于16S rRNA序列同源性和基因间区分析,对分离菌株进行分类鉴定。通过分光光度法和电喷雾电离质谱法(Electrospray Ionisation/Mass Spectrometry,ESI/MS)确定分离菌株对吡啶和喹啉的降解性能。通过质粒消除验证降解质粒的存在,同时克隆了可能的降解基因。【结果】鉴定结果表明,两株分离细菌隶属于Pseudomonas,并将其命名为XJUHX-1和XJUHX-12。降解数据表明,2株菌株分别耐受吡啶和喹啉,同时分别检测到4种和2种吡啶和喹啉的可能降解产物。结果还表明,消除质粒后的菌株对吡啶和喹啉的降解能力降低。扩增的编码NADH还原酶部分的降解喹啉oxoR基因和编码硝酸还原酶的降解吡啶的nifH基因,同时在E.coli中表达了43kDa和16kDa的蛋白。【结论】2株Pseudomonas具有降解吡啶和喹啉的能力。     

泽普油田石油降解功能菌株的分离与鉴定

目的:在研究泽普油田产区菌株多态性的基础上,对石油降解功能菌株进行探讨。方法:通过稀释平板涂布法分离微生物;采用TLC和HPLC方法对分离菌株进行多糖成分鉴定,并进行16S rRNA和18S rRNA序列分析;采用溶血圈实验、排油圈法、石油黏度测定等方法,测定石油降解菌株降解能力。结果:分离菌株中有5株细菌和4株真菌,且菌株多糖的TLC分析结果与形态学鉴定结果基本相同;5株分离细菌中,2株细菌隶属于Bacillus属,3株细菌隶属于Enterobacter。另外4株真菌被鉴定为隶属于Penicillium属;分离菌株B2能降解石油。结论:泽普油田石油产区微生物的群落中存在一定丰度的细菌和真菌,含有B2的原油发酵液黏度为0.67±0.20 mPa.s.和原油在0.05水平上有显著性差异。推断B2对石油具有一定的降解能力。     

培养和非培养法分析冷藏鸡肉胴体中的细菌多样性

运用纯培养和非培养法对冷藏鸡肉胴体上细菌多样性进行了对比研究。采用培养法从鸡肉胴体中初步分离到45株细菌菌株,16S rDNA-ARDRA分析得到9株代表性细菌,其16S rDNA序列系统发育分析表明,这些菌株隶属于Bacillus sp.、Shigella sp.、Pseudomonas sp.、Citrobacter sp.、Klebsiella sp.和Escherichia sp.6个属。16S rDNA-ARDRA联合PAGE和16S rDNA全序列分析的非培养法结果表明,冷藏鸡肉中细菌主要属于Acinetobacter sp.、Bacillus sp.、Acidovorax sp.、Brochothrix thermosphacta、Lactococcus garvieae和Leuconostoc lactis等16个属。非培养法揭示的细菌多样性比培养法丰富,但二者结合使用能让肉品中微生物多样性得到更全面的展示。     

可降解吡啶的全食副球菌B21-3的筛选鉴定及降解特性

【背景】吡啶作为一种难降解的有机污染物普遍存在于焦化、炼油、皮革和制药等行业的废水中,并对环境造成危害。【目的】治理废水中残留的有机污染物吡啶,筛选高效降解菌。【方法】采用富集培养和选择培养,以石家庄某污水处理厂的活性污泥为材料进行吡啶降解菌的筛选,通过形态特征、生理生化特性、(G+C)mol%测定及16S rRNA基因序列系统发育分析对筛选到的降解菌进行鉴定,并分析其对吡啶的降解特性。【结果】分离筛选到一株能以吡啶为唯一碳源和氮源生长代谢的降解菌B21-3,经鉴定该菌株为全食副球菌(Paracoccuspantotrophus)。菌株B21-3对吡啶的最适降解温度为32°C,最适降解pH为7.0,吡啶浓度为100mg/L时降解率为48.50%±0.02%;通过逐步提高吡啶初始浓度对菌株进行驯化,驯化后菌株可耐受较高浓度吡啶且吡啶降解率显著增加,吡啶浓度为100 mg/L时驯化后菌株B21-3对吡啶的降解率为90.26%±1.70%。驯化后菌株在含吡啶的无机盐平板上传代培养15代后,对吡啶的降解率为89.39%±2.03%。【结论】菌株B21-3具有较强的吡啶降解能力及降解稳定性,该菌株可作为吡啶污染水体生物修复的潜在资源。     

石油降解菌的分子鉴定及降解能力研究

以六株具有石油降解功能的细菌(编号为GW40、GW101、GW109、GW117、GW157、GW159)为材料, 通过全细胞蛋白电泳聚类, 16S rRNA 基因系统发育分析和生理生化特性初步鉴定, 鉴定结果为不动杆菌属(Pseudomonas sp.)。并研究了不同pH, 温度和石油浓度对菌株降解石油能力的影响。SDS-PAGE 图谱分析结果表明, 在14.4-96.4KDa 范围内, 它们有92.3%以上相似性蛋白图谱, 证明它们属于同一类群; 16S rRNA 基因系统发育分析表明六株菌与不动杆菌属的亲缘关系较近, 因此把它们归到不动杆菌属。六菌株在pH 6.0-7.0, 温度为 30 ℃和石油浓度为2 g·L−1时, 对石油的降解率最大。     

烤烟根际烟碱降解细菌的多样性及其促生特性分析

【背景】挖掘兼具烟碱降解和植物根际促生细菌(Plant Growth-Promoting Rhizobacteria,PGPR)功能的细菌资源,有助于保护土壤质量,实现绿色种植。【目的】分析烤烟根际细菌多样性,筛选可降解高浓度烟碱的PGPR。【方法】采用纯培养法在选择性培养基上分离烟碱降解细菌。通过BOXA1R-PCR分析技术、16SrRNA基因测序及系统发育树构建,对菌株的遗传多样性和分类学地位进行分析。进一步评价了菌株的吲哚乙酸(Indole-3-Acetic Acid,IAA)活性、溶磷能力、病原菌拮抗能力等PGPR指标,以筛选出高效PGPR,最后通过盆栽试验验证其促生效果。【结果】分离得到58株烟碱降解细菌,根据BOXA1R-PCR指纹图谱选取11株菌进行16S rRNA基因序列测定,结果表明,58株菌分别属于芽孢杆菌属(Bacillus)、假单胞菌属(Pseudomonas)、拉乌尔菌属(Raoultella)和短波单胞菌属(Brevundimonas)4个属,以芽孢杆菌属(Bacillus)为优势菌属。58株细菌中48.28%的菌株可产IAA,27.59%具备溶磷能力,37.93%具备纤维素降解能力,G2-13、G2-3及HT2-8因促生与抗病特性突出而被筛选为目标功能菌。盆栽试验结果表明,G2-13菌株对幼苗生长的促进作用明显,可使株高与地上部鲜重分别增加33.05%与53.32%。【结论】烤烟根际存在较为丰富多样的烟碱降解细菌,它们在种植业上具有潜在的应用价值。     

全氟辛烷磺酸降解菌的分离与鉴定

目的筛选和分离降解全氟辛烷磺酸(PFOS)的细菌,并进行初步鉴定和降解效率分析。方法采集全氟化工厂周边土壤,利用PFOS为唯一碳源的无机盐培养基进行驯化和富集培养,分离降解PFOS的细菌;通过形态观察、生理生化特性检测和基于16SrRNA基因序列的系统发育分析对分离菌株进行鉴定;采用GC-MS检测其降解PFOS的能力。结果分离获得3株能降解PFOS的细菌YSB1、YSB2和YSB3,初步鉴定分属于鞘酯菌属(Sphingobiumsp.)、中华根瘤菌属(Sinorhizobiumsp.)和苍白杆菌属(Ochrobactrumsp.)。菌株YSB1、YSB2和YSB3在以PFOS为唯一碳源生长的无机盐培养基中生长良好,其对PFOS最大降解率分别为18.4%、10.1%和14.1%。结论自然界存在较丰富的降解持久性有机污染物PFOS的微生物资源。     

一株纤维素降解细菌的筛选、鉴定及产酶条件分析

目的筛选高活性的纤维素降解细菌,并进行初步鉴定和产纤维素酶条件分析。方法采集吉首旗帜山松树林的土壤样品,通过富集培养和刚果红平板染色法筛选分离纤维素降解细菌;通过形态观察、生理生化特性检测和基于16S rRNA基因序列的系统发育分析对分离的菌株进行初步鉴定。利用单因素实验对产纤维素酶条件进行优化。结果分离获得1株高活性纤维素降解细菌JDM11,初步鉴定其为Bacillus velezensis;菌株JMD11产纤维素酶最佳培养温度、最适初始pH和培养时间分别为28℃、7.0～7.5和32h,在该条件下其滤纸酶(FPase)和羧甲基纤维素酶(CMCase)活力分别为260.32U/ml和651.75U/ml。结论菌株JDM11是1株高活性纤维素降解的Bacillus velezensis。     

福美双农药降解菌的分离与筛选

本研究的目的是筛选出具有降解福美双功能的菌株,并对福美双的降解效果进行评价。通过选择性培养基的富集技术和梯度稀释法从不同烟叶样品和植烟土壤样品中分离筛选出311株农药降解菌株;通过摇瓶培养和高效液相色谱法从311个菌株降解菌中复筛得到5株降解菌。继续从降解福美双能力对5株菌株进行筛选,结果显示:5种菌株中FM84和FM197对福美双的降解率均达到了90%以上。采用16S r DNA序列分析结合细菌常规鉴定方法对菌株进行了初步鉴定,FM84为克雷伯菌属和FM197为肠杆菌属。研究表明,菌株FM84和FM197对福美双有较高并且稳定的降解能力。     

一小型温泉中降解淀粉细菌的筛选、鉴定与淀粉酶性质初步分析

为筛选耐热淀粉酶产生菌并揭示其在温泉中的分布情况,从腾冲县腊幸村一小型热泉不同部位采集样品进行微生物分离及鉴定。样品在65℃培养,挑选形态有差异的菌落点种淀粉-台盼蓝平板,共获得34株具有淀粉降解能力的细菌。分子鉴定结果显示,从温泉底部沙土中筛选得到细菌具有较高的生物多样性,9株具有淀粉降解能力的细菌分别属于土芽胞杆菌(Geobacillus)、厌氧芽胞杆菌(Anoxybacillus)和芽胞杆菌(Bacillus)3个属、7个种,菌株间16S rDNA序列均有一定的差异。对编号为201(Geobacillus thermoglucosidasius)和208(Anoxybacillus flavithermus)的菌株胞外淀粉酶进行初步分析,其胞外淀粉酶最适温度分别为60和70℃,均高于淀粉糊化温度,具有一定的应用潜力。     

Morphological,biochemical and molecular identification of petroleum hydrocarbons biodegradation bacteria isolated from oil polluted soil in Dhahran,Saud Arabia

Accumulation of petroleum hydrocarbon residual considered a major environmental problem in the kingdom of Saudi Arabia cause of intensive efforts for oil detecting. Until now, In situ biodegradation considered the most effective method for petroleum hydrocarbon residual biodegradation. The aim of this study is isolation and identification biodegradable capability bacteria from contaminated sites in Khurais oil field, Dhahran, Saud Arabia via Different morphological and biochemical and molecular methods. Furthermore, degradation level in contaminated liquid medium and soil were evaluated. Three bacterial strains were selected from petroleum-contaminated soils of Khurais oil field depending on their capacity to grow in the existence of hydrocarbon components and identified according to morphological, biochemical. Interestingly, 16S rDNA sequencing fingerprinting results confirmed our bacterial identification as Bacillus subtilis, Pseudomonas aeruginosa and Bacillus cereu. Phyllogenetic tree was constructed and genetic similarity was calculated according to alignments results. Biodegradation patterns for different three isolates were reflected varied degradation ability for three isolates regarding incubation time. Different features were studied for three biodegrading bacterial strains and identified as Bacillus subtilis, Pseudomonas aeruginosa and Bacillus cereus. Remarkable degradation rate % patterns for hydrocarbons residual were recorded for all three isolates with varied.     

Assessment of ecological diversity of rhizobacterial communities in vermicompost and analysis of their potential to improve plant growth

Present study was designed to determine the microbial diversity from three distinctive sites (amended with vermicompost) of Gujarat, India. A set of 76 strains were screened from total of 438 strains that exhibit plant growthpromoting (PGP) and antagonistic potential isolated from sites PS1 (Mehsana district), BS2 (Dantiwada district) and VS3 (Gandhinagar district). Their diversity indices were studied for determining the species richness and evenness of screened isolates. Results revealed that site BS2 showed the most significant diversity indices in terms of Shannon (H′ 1.525) and Simpson (1/D 5.120) than other two samples. Principal component analysis showed that bacterial diversity (H′) was correlated with the soil characteristics. Chickpea and groundnut plants inoculated with MBCU1 and MBCU3 isolates showed an increase in the vegetative growth parameters that evaluate plant growth when compared to uninoculated controls. Strains MBCU1 and MBCU3 were identified as Pseudomonas stutzeri and Pseudomonas mosselii, respectively, according to sequence analysis of the 16S rRNA gene. These both isolates belong to site BS2 and they showed specific PGP traits suggesting that these isolates can promote plant growth by more than one mechanism with respect to their higher diversity index.     

长期石油和重金属污染对农田土壤假单胞菌种群多样性及结构的影响

采用PCR—DGGE方法,对我国东北地区长期石油和重金属污染农田土壤中的假单胞菌多样性及其种群结构进行研究．结果表明：石油污染区土壤中假单胞菌多样性指数显著高于重金属污染区;石油污染区旱田土壤假单胞菌多样性接近于对照清洁土壤,但低于相似污染程度的石油污染区水田土壤,表明污染物类型与耕作管理方式是影响土壤中假单胞菌多样性的主要因素．经16SrRNA的V6／V7区测序,Pseudomonas mendocina、P．stutzeri和P．aeruginosa是该石油和重金属污染区土壤中的优势类群,说明在长期污染胁迫下,这3种假单胞菌分别得到了不同程度的富集,推测与石油烃的自然降解及假单胞菌的重金属抗性有关．     

明永冰川垂直气候带中可培养低温细菌多样性分析

本研究对位于云南滇西北的明永冰川地区暖温带、中温带和寒温带三个不同垂直气候带中可培养低温细菌的多样性进行了研究。利用四种不同培养基对该地区可培养低温细菌进行了分离纯化,共得到细菌37 513株,根据菌落形态特征分为了391种,其中LB培养基分离到99种,Organic培养基分离到78种,PSG培养基分离到96种,PYGV培养基分离得到118种,可以看出寡营养培养基PYGV分离得到的细菌种类多于LB和Organnic等富营养培养基,表明PYGV针对冰川地区细菌的分离与鉴定更为合适;通过革兰氏染色和扫描电镜观察表明大部分菌株为革兰阴性杆菌;对已分离得到的优势菌进行了16S rRNA基因测序并构建系统发育树,分析得出:假单胞菌属(Pseudomonas)、耶尔森氏菌属(Yersinia)和黄杆菌属(Flavobacterium)在明永冰川不同垂直气候带上均有分布,其中假单胞菌属最多占据35%;而寡养单胞菌属(Stenotrophomonas)是寒温带上特有的菌属。本研究证明明永冰川地区垂直气候带中可培养低温细菌多样性非常丰富,也为下一步了解这一特殊地理生态环境下微生物的群落演替规律、研究冰川环境中微生物群落如何响应气候变化提供了参考。     

Comparative identification by fatty acid analysis of soil,rhizosphere, and geocarposphere bacteria of peanut (Arachis hypogaea L.)

Bacterial isolates were collected from the geocarposphere, rhizosphere, and root-free soil of field grown peanut (Arachis hypogaea L.) at three sample dates, and the isolates were identified by analysis of fatty acid methyl-esters to determine if qualitative differences exist among the bacterial microflora of these zones. Five bacterial genera were associated with isolates from soil, while pod and root isolates constituted 16 and 13 genera, respectively, indicating that bacterial diversity was higher in the rhizosphere and geocarposphere than in soil. The dominant (most frequently identified) genus across all three samples dates was Flavobacterium, for pods, Pseudomonas for roots, and Bacillus, for root-free soil. Sixteen bacterial taxa were only isolated from the geocarposphere, 7 only from the rhizosphere, and 5 only from soil. These results show that specific bacterial taxa are preferentially adapted to colonization of the geocarposphere and suggest that the soil, rhizosphere, and geocarposphere constitute three distinct ecological niches. Bacteria which colonize the geocarposphere should be examined as potential biological control agents for pod-invading fungi such as the toxigenic strains of Aspergillus flavus and A. parasiticus.     

A novel NADH-dependent and FAD-containing hydroxylase is crucial for nicotine degradation by Pseudomonas putida

Nicotine, the main alkaloid produced by Nicotiana tabacum and other Solanaceae, is very toxic and may be a leading toxicant causing preventable disease and death, with the rise in global tobacco consumption. Several different microbial pathways of nicotine metabolism have been reported: Arthrobacter uses the pyridine pathway, and Pseudomonas, like mammals, uses the pyrrolidine pathway. We identified and characterized a novel 6-hydroxy-3-succinoyl-pyridine (HSP) hydroxylase (HspB) using enzyme purification, peptide sequencing, and sequencing of the Pseudomonas putida S16 genome. The HSP hydroxylase has no known orthologs and converts HSP to 2,5-dihydroxy-pyridine and succinic semialdehyde, using NADH. (18)O(2) labeling experiments provided direct evidence for the incorporation of oxygen from O(2) into 2,5-dihydroxy-pyridine. The hspB gene deletion showed that this enzyme is essential for nicotine degradation, and site-directed mutagenesis identified an FAD-binding domain. This study demonstrates the importance of the newly discovered enzyme HspB, which is crucial for nicotine degradation by the Pseudomonas strain.     

贝壳砂改良土壤中反硝化细菌的分析

【目的】通过对一处经过长期使用贝壳砂进行改良的土壤中的反硝化细菌的多样性和细菌分离分析,研究该土壤中反硝化细菌的组成特征。【方法】采用454焦磷酸测序的方法分析了土壤样品中微生物群落的组成,选用Giltay培养基培养、鉴定从土壤中挑选的分离物的反硝化能力,并对具有反硝化能力的微生物进行了16S rRNA基因鉴定。【结果】该土壤样品中占据优势地位的为Proteobacteria、Acidobacteria、Bacteroidetes、Chloroflexi等门的微生物,属的水平上则有近70%尚未确立分类地位。所分离的细菌中,共得到12株厌氧条件下具有较高硝酸盐去除效率的微生物,分属Pseudomonas、Aeromonas、Serratia和Acinetobacter,均为γ变形菌纲的微生物。【结论】该土壤中具有较高的微生物多样性,包括很多未知类型的微生物和众多类型的反硝化细菌;分离到了11株具有反硝化能力的菌株,可用于该土壤的反硝化过程的进一步研究。     

云南省富宁磁铁矿矿区可培养细菌多样性初步研究

目的对云南富宁磁铁矿矿区样品中可培养细菌进行分离并对其多样性进行了初步研究。方法采集云南富宁磁铁矿矿区土样和矿石样,采用固体肉汤培养基、卵黄培养基及PYGV培养基分离该矿区环境中的可培养细菌,利用16SrRNA基因序列分析构建系统发育树,并统计不同种属细菌的数量,初步评估细菌多样性。结果富宁磁铁矿矿区环境细菌的主要种群包括厚壁菌门、放线菌门和变形菌门的不同菌属：芽孢杆菌属、葡萄球菌属、节杆菌属和假单胞菌属的菌株,其中抗逆性较强的优势菌群为厚壁菌门的芽孢杆菌。结论本研究初步表明富宁磁铁矿矿区可培养细菌种类具有一定的多样性。     

Utilization of Iron Gallate and Other Organic Iron Complexes by Bacteria from Water Supplies

The degradation of four soluble organic iron compounds by bacteria isolated from surface waters and the precipitation of iron from these complexes by the isolates was studied. All eight isolates brought about the precipitation of iron when grown on ferric ammonium citrate agar. Three isolates were able to degrade ferric malonate, and three others degraded ferric malate with iron precipitation. Only three isolates, two strains of Pseudomonas and one of Moraxella, were able to degrade gallic acid when this was supplied as the sole carbon source. One strain of Pseudomonas was found to be active in degrading ferric gallate. Electron microscopy of cells of this bacterium after growth in ferric gallate as the sole carbon source yielded results indicating uniform deposition of the iron on or in the bacterial cells. Seven of the isolates could degrade the iron gallate complex if supplied with additional carbon in the form of yeast extract.