Microdosimetry model for boron neutron capture therapy: I. Determination of microscopic quantities of heavy particles on a cellular scale

Due to the limitations of existing microdosimetry models, a new model called MICOR has been developed to analyze the spatial distribution of microscopic energy deposition for boron neutron capture therapy (BNCT). As in most existing models, the reactions independent of the incident neutron energy such as the boron and the nitrogen capture reactions can be considered. While other models do not include reactions that are dependent on the neutron energy such as the proton recoil reaction, the present model is designed so that the energy deposition resulting from these reactions is included. The model MICOR has been extended to enable the determination of the biological effects of BNCT, which cannot be done with the existing models. The present paper describes the determination of several microscopic quantities such as the number of hits, the energy deposition in the cell nucleus, and the distribution of lineal and specific energy deposition. The companion paper (Radiat. Res. 155, 000-000 2001) deals with the conversion of these microscopic quantities into biological effects. The model is used to analyze the results of a radiobiological experiment performed at the HB11 facility in the HFR in Petten. This analysis shows the value of the model in determining the dose depositions on a cellular scale and the importance of the extension to the energy deposition of the proton recoil.     

Monte Carlo simulation of single-cell irradiation by an electron microbeam

A model is presented for irradiation of a cellular monolayer by an electron microbeam. Results are presented for two possible window designs, cells plated on the vacuum-isolation window and cells plated on Mylar above the vacuum-isolation window. Even for the thicker dual-membrane window that facilitates tissue culture and allows the target cell to be centered relative to the electron beam, the majority of the calculated beam spreading was contained in a volume typical of the mammalian HeLa cell line. None of the 10⁴ electrons simulated at 25 keV were scattered into the spatial region occupied by neighbors of the target cell. Dose leakage was largest at 50 keV where the mean energy deposited in all neighbors was 21% of that deposited in the target cell. This ratio was reduced to 5% at 90 keV, the highest beam energy simulated. Lineal energy spectra of energy deposition events scored in the nucleus of the target cell became progressively more like the gamma-ray spectrum as the electron beam energy increased. Hence, our simulations provide strong support for the feasibility of a low-LET, single-cell irradiator. Received: 16 March 2000 / Accepted: 9 May 2000     

Photosynthate partitioning in Basal zones of tall fescue leaf blades

Elongating grass leaves have successive zones of cell division, cell elongation, and cell maturation in the basal portion of the blade and are a strong sink for photosynthate. Our objective was to determine dry matter (DM) deposition and partitioning in basal zones of elongating tall fescue (Festuca arundinacea Schreb.) leaf blades. Vegetative tall fescue plants were grown in continuous light (350 micromoles per square meter per second photosynthetic photon flux density) to obtain a constant spatial distribution of elongation growth with time. Content and net deposition rates of water-soluble carbohydrates (WSC) and DM along elongating leaf blades were determined. These data were compared with accumulation of ¹⁴C in the basal zones following leaf-labeling with ¹⁴CO₂. Net deposition of DM was highest in the active cell elongation zone, due mainly to deposition of WSC. The maturation zone, just distal to the elongation zone, accounted for 22% of total net deposition of DM in elongating leaves. However, the spatial profile of ¹⁴C accumulation suggested that the elongation zone and the maturation zone were sinks of equal strength. WSC-free DM accounted for 55% of the total net DM deposition in elongating leaf blades, but only 10% of incoming ¹⁴C-photosynthate accumulated in the water-insoluble fraction (WIF ≈ WSC-free DM) after 2 hours. In the maturation zone, more WSC was used for synthesis of WSC-free DM than was imported as recent photosynthate.     

1961-2010年中国区域氮沉降时空格局模拟研究

由于人类活动的干扰,近年来,通过沉降和施肥形式进入陆地生态系统的氮素持续增加,众多研究表明,中国已经成为继欧洲和北美之后的第三大氮沉降区。氮与陆地生态系统生物地球化学循环的一系列过程都相互联系,碳循环及其格局也受到氮的影响,因此大气氮沉降的变化受到广泛关注,探明区域大气氮沉降的时空格局对评估氮沉降对陆地生态系统碳循环的影响具有重要意义。构建了一个基于降水、能源消费和施肥数据的氮沉降时空格局模拟方法,通过与观测数据的比较说明该模拟方法能够较好地模拟氮沉降的时空变化,在此基础上,利用该方法模拟了1961-2010年中国区域氮沉降的时空格局。结果表明:(1)1961-2010年中国区域年平均氮沉降速率为0.81 g N m^-2 a^-1,由20世纪60年代的0.31 g N m^-2 a^-1增加到21世纪初的1.71 g N m^-2 a^-1,年增长率为0.04 g N m^-2 a^-1。总氮沉降量由20世纪60年代的2.85 TgN/a增加至15.68 TgN/a。(2)NH_x-N的沉降速率大约是NO_y-N的4倍,是主要的氮沉降形式。1961-2010年我国湿沉降平均速率为0.63 g N m^-2 a^-1,是干沉降速率(0.17 g N m^-2 a^-1)的3.63倍,是氮素进入陆地生态系统的重要途径。(3)在空间上,我国的大气氮沉降速率呈现出由东南向西北梯度递减的格局,华北、华中和东北的农田是氮沉降速率最大的区域,同时也是氮沉降速率增长最快的区域。     

The mechanism of two-photon photochemical laser-induced deposition of silicon thin films from silane

We have investigated the mechanism of silicon thin film deposition by ArF excimer laser irradiation of silane gas diluted with argon. The Si films were deposited by a focused laser beam irradiating in parallel to silicon and silicon dioxide substrates at a gas flow rate of 20 SCCM, total pressure of 60 Torr and repetition rate of 15 Hz. At laser energy fluences higher than 160 mJ/cm² the deposition rate was almost independent of the incident laser energy, while at a lower energy the deposition rate depended strongly on the laser energy. A 3/2 power law was found for absorption measurements carried out at the same pressure under flow conditions and for several repetition rates at average laser power above 300 mW, regardless of the laser repetition rate. This kind of behavior is typical of a multiphoton absorption process involving saturation effects caused by focusing of the laser beam. Below 300 mW the power dependence indicated a two-photon absorption process. From the observed photochemical yield we found the value 5.7×10^-44 cm⁴ s molec^-1 for the two-photon absorption cross section.A Gaussian-shaped transverse thickness distribution of the deposited layer was obtained with a maximum value corresponding to the center of the laser beam spatial profile. This distribution depended on the deposition parameters, and was attributed to the diffusion process of silane decomposition products in the gas phase in the substrate. Analysis of the adsorption features of the process showed that the major product adsorbed on the substrate surface is silicon.An Arrhenius plot of the deposition rate versus the substrate temperature exhibits two regimes, each associated with a different activation energy. Between 340°C and 460°C the activation energy is 0.25–0.3 e. V, while between 500°C and 560°C it is 1.1 e. V. The activation energy in the higher temperature regime is similar to that found for thermal nonlaser assisted chemical vapor deposition. However, in the lower temperature regime the deposition process is mainly laser induced, and the value of the activation energy is due to the process of adsorption of the gas species on the substrate.     

MCNP5 evaluation of dose dissipation in tissue-like media exposed to low-energy monoenergetic X-ray microbeam

Following a significant increase in the number of facilities in the world having and developing low- and high-linear energy transfer (LET) microbeams for experimental radiobiological studies, it is useful and demanding to establish reliable computational models to analyze such experiments. This paper summarizes initial MCNP5 calculations of the basic parameters needed to study X-ray microbeam penetration, dose deposition and dose spatial dissipation in tissue-like media of micro and macro scales. The presented models can be used to predict doses delivered to neighboring cells and analyze the cause of bystander cell deaths. In the case of low-LET radiation, dose distribution is more homogenized when compared to high-LET that deposits almost all of its energy in the cell hit by radiation. Results are presented for a microbeam of monoenergetic soft (2–10 keV) X-rays for two different micro-models: (a) single-cells of homogeneous and uniform chemical compositions, and (b) single-cells of heterogeneous structures (nucleus and cytoplasm) with different chemical compositions. In both numerical models, only one cell is irradiated and the electron and X-ray doses in all cells are recorded. It was found that surrounding cells receive approximately five orders of magnitude less dose than the target cell in the homogenized cell model. The more detailed, heterogeneous model showed that the nucleus of the target cell receives more than 95% of the dose delivered to the entire cell, while neighboring cell nuclei receive approximately 65% of their total cell dose. Results of the macroscopic behavior of a soft X-ray microbeam using a cylindrical phantom 5 cm tall and 1 cm in diameter are also presented. Three-dimensional dose profiles indicate the spatial dose dissipation. For example, a 10 keV X-ray microbeam dose scatters to a negligible level at 0.3 cm radially from the center while it reaches an axial depth of 2 cm.     

Collagen self-assembly and the development of tendon mechanical properties

The development of the musculoskeleton and the ability to locomote requires controlled cell division as well as spatial control over deposition of extracellular matrix. Self-assembly of procollagen and its final processing into collagen fibrils occurs extracellularly. The formation of crosslinked collagen fibers results in the conversion of weak liquid-like embryonic tissues to tough elastic solids that can store energy and do work. Collagen fibers in the form of fascicles are the major structural units found in tendon. The purpose of this paper is to review the literature on collagen self-assembly and tendon development and to relate this information to the development of elastic energy storage in non-mineralizing and mineralizing tendons. Of particular interest is the mechanism by which energy is stored in tendons during locomotion. In vivo, collagen self-assembly occurs by the deposition of thin fibrils in recesses within the cell membrane. These thin fibrils later grow in length and width by lateral fusion of intermediates. In vitro, collagen self-assembly occurs by both linear and lateral growth steps with parallel events seen in vivo; however, in the absence of cellular control and enzymatic cleavage of the propeptides, the growth mechanism is altered, and the fibrils are irregular in cross section. Results of mechanical studies suggest that prior to locomotion the mechanical response of tendon to loading is dominated by the viscous sliding of collagen fibrils. In contrast, after birth when locomotion begins, the mechanical response is dominated by elastic stretching of crosslinked collagen molecules.     

Mathematical simulation of proton tracks in water vapor and their microdosimetric analysis

Summary The spatial pattern of primary physical events was calculated for protons in water vapor by means of a Monte Carlo program. Two different cross section data sets were used to cover the proton energy range from 0.2 to 15 MeV. From the spatial pattern of primary energy deposition, proximity functions were derived and from these the dose mean lineal energy was calculated. The contributions of different track components to for spherical target volumes of 1–100 nm were analysed. The results are compared with the LET approximation and with analytical calculations of based on expectation values of the radial energy deposition around the proton path (radial dose profiles). Finally the associated volume of proton tracks was calculated using the so called linear approximation, and energy deposition distributions were derived. These were compared with distributions calculated by means of restricted-LET.Dedicated to Prof. W. Jacobi on the occasion of his 60th birthday     

Secondary cell wall patterning during xylem differentiation

Xylem cell differentiation involves temporal and spatial regulation of secondary cell wall deposition. The cortical microtubules are known to regulate the spatial pattern of the secondary cell wall by orientating cellulose deposition. However, it is largely unknown how the microtubule arrangement is regulated during secondary wall formation. Recent findings of novel plant microtubule-associated proteins in developing xylem vessels shed new light on the regulation mechanism of the microtubule arrangement leading to secondary wall patterning. In addition, in vitro culture systems allow the dynamics of microtubules and microtubule-associated proteins during secondary cell wall formation to be followed. Therefore, this review focuses on novel aspects of microtubule dynamics leading to secondary cell wall patterning with a focus on microtubule-associated proteins.     

The Ultrastructure and Analytical Microscopy of Silicon Deposition in the Aleurone Layer of the Caryopsis of Setaria italica (L.) Beauv.

Silicon deposition in the caryopsis of foxtail millet (Setariaitalica (L.) Beauv.) from Lin Xian, Northern China was investigatedusing transmission electron microscopy and energy dispersiveX-ray analysis. The highest silicon count rates were obtained from the pericarpand outer aleurone cell walls, and particularly from a granularelectron-opaque layer external to the outer aleurone cell wall.Silicon was not detected in tissues interior to the aleurone. A possible mechanism for silicon deposition in the caryopsisis suggested, and the results are discussed with respect tothe high incidence of oesophageal cancer in Lin Xian, NorthernChina. Setaria italica (L.) Beauv., foxtail millet, silicon deposition, alcurone layer, caryopsis, ultrastructure, X-ray analysis     

Microdosimetry and chromosome aberrations: Effects of 230 keV neutrons on Vicia faba chromosomes

Physical energy deposition events have been related to sub-nuclear cytological events (chromosomal changes) in metaphases sequentially accumulated from the latter part of the cell cycle of Vicia faba. 230 keV neutrons produce about 0.4 recoil protons per late interphase nucleus per rad with the majority of protons travelling 1 to 2 microns from their origin, depositing energy at around 90 keV per micron. The frequency of induced aberrations is basically linear with dose, though varying through consecutive cell sampling periods because of differential induced mitotic delay. Distributions of chromosomal aberrations and total cytological events are overdispersed in relation to the Poisson distribuyion indicating that some proton recoils produce multiple events. When gaps and aberrations within chromosomes and multiple aberrations between chromosomes, are considered as discrete events, distributions follow Poisson expectations. About 40% of proton recoils result in observable cytological change. The highly energetic proton recoils (～90 keV per micron) which can induce multiple events are the ones most likely to produce effects which result in cell death. The sphere of influence of the proton recoils is probably adequately estimated from their range (～1 to 2 μm) since it seems compatible with the spatial proximity of the initial components of the resultant chromosome aberrations.     

Carbon and nitrogen deposition in expanding tissue elements of perennial ryegrass (Lolium perenne L.) leaves during non-steady growth after defoliation

The effect of defoliation on the deposition of carbon (C) and nitrogen (N) and the contribution of reserves and current assimilates to the use of C and N in expanding leaf tissue of severely defoliated perennial ryegrass (Lolium perenne L.) was assessed with a new material element approach. This included ¹³C/¹²C-and ¹⁵N/¹⁴N-steady-state labelling of all post-defoliation assimilated C and N, analysis of tissue expansion and displacement in the growth zone, and investigation of the spatial and temporal changes in substrate and label incorporation in the expanding elements prior to and after defoliation. The relationship between elemental expansion and C deposition was not altered by defoliation, but total C deposition in the growth zone was decreased due to decreased expansion of tissue at advanced developmental stages and a shortening of the growth zone. The N deposition per unit expansion was increased following defoliation, suggesting that N supply did not limit expansion. Transition from reserve- to current assimilation-derived growth was rapid (<1 d for carbohydrates and approximately 2 d for N), more rapid than suggested by label incorporation in growth zone biomass. The N deposition was highest near the leaf base, where cell division rates are greatest, whereas carbohydrate deposition was highest near the location of most active cell expansion. The contribution of reserve-derived relative to current assimilation-derived carbohydrates (or N) to deposition was very similar for elements at different stages of expansion     

Fibroblast state switching orchestrates dermal maturation and wound healing

Murine dermis contains functionally and spatially distinct fibroblast lineages that cease to proliferate in early postnatal life. Here, we propose a model in which a negative feedback loop between extracellular matrix (ECM) deposition and fibroblast proliferation determines dermal architecture. Virtual‐tissue simulations of our model faithfully recapitulate dermal maturation, predicting a loss of spatial segregation of fibroblast lineages and dictating that fibroblast migration is only required for wound healing. To test this, we performed in vivo live imaging of dermal fibroblasts, which revealed that homeostatic tissue architecture is achieved without active cell migration. In contrast, both fibroblast proliferation and migration are key determinants of tissue repair following wounding. The results show that tissue‐scale coordination is driven by the interdependence of cell proliferation and ECM deposition, paving the way for identifying new therapeutic strategies to enhance skin regeneration.     

New access to Alzheimer’s and other neurodegenerative diseases

Single-cell analysis is gaining popularity in the field of mass spectrometry as a method for analyzing protein and peptide content in cells. The spatial resolution of MALDI mass spectrometry (MS) imaging is by a large extent limited by the laser focal diameter and the displacement of analytes during matrix deposition. Owing to recent advancements in both laser optics and matrix deposition methods, spatial resolution on the order of a single eukaryotic cell is now achievable by MALDI MS imaging. Provided adequate instrument sensitivity, a lateral resolution of ?10 µm is currently attainable with commercial instruments. As a result of these advances, MALDI MS imaging is poised to become a transformative clinical technology. In this article, the crucial steps needed to obtain single-cell resolution are discussed, as well as potential applications to disease research.     

The consideration of biological effectiveness of low energy protons using biophysical modeling of the effects induced by exposure of V79 cells

We have applied Monte Carlo track structure simulations to estimate relative biological effectiveness (RBE) of low-energy protons using biophysical modelling of radiation effects induced by exposure of V79 cells growing in mono-layer. The microscopic energy deposition in cell nucleus and sub-nucleus volumes was investigated in order to understand the reasons of enhanced biological effectiveness near Bragg peak. Theoretical estimations of RBE based on frequency/dose average lineal energy and calculated yields of initial DNA breaks were collated with experimental RBE_M data. It was found: (1) dose average lineal energy for whole cell nucleus as a function of proton energy shows a distinct peak at 550 keV; (2) the peak values for subnucleus volumes are large compared with the whole cell nucleus; (3) the yield of complex DNA breaks correlates with experimental RBE_M data.     

Monte Carlo simulation of the spatial distribution of energy deposition for an electron microbeam

Dosimetry calculations characterizing the spatial variation of the energy deposited by the slowing and stopping of energetic electrons are reported and compared with experimental measurements from an electron microbeam facility. The computations involve event-by-event, detailed-histories Monte Carlo simulations of low-energy electrons interacting in water vapor. Simulations of electron tracks with starting energies from 30 to 80 keV are used to determine energy deposition distributions in thin cylindrical rings as a function of penetration and radial distance from a beam source. Experimental measurements of the spatial distribution of an electron microbeam in air show general agreement with the density-scaled simulation results for water vapor at these energies, yielding increased confidence in the predictions of Monte Carlo track-structure simulations for applications of the microbeam as a single-cell irradiator.     

Utilization of energy for growth in lambs of the breed german merino landsheep

Based on energy deposition and energy intake the utilization of energy for fat and protein deposition and the mean energy utilization for growth as well as the energy requirement for maintenance were estimated in this study. Fifty-four male and 54 female lambs were fed at three feeding levels and slaughtered at various body weights (BW): 18, 30, 45, and 55 kg. Based on the method of the comparative slaughter technique the total body of each animal was analysed. From the data of empty-body gain, fat, protein and energy deposition in the different fattening periods was calculated. The utilization of metabolizable energy for growth and maintenance was estimated by a multiple linear regression model. In this regression model, a utilization of energy for fat deposition of 71% and for protein deposition of 30% was determined (R² = 0.869). The requirement for maintenance was 520 kJ·kg BW ^{? 0.75}·d ^{? 1}. A slightly higher requirement for maintenance was determined for female lambs. The study indicated that the used regression model can be recommended to estimate the utilization of energy and the requirement for maintenance in growing lambs.     

Cytological changes during cell wall sac formation in mulberry idioblasts

Summary. When calcium carbonate crystals are formed in mulberry (Morus abla) idioblasts, they are deposited in newly formed cell wall sacs. The initial cytological events leading to cell wall sac formation were observed in the distal end of young idioblasts and tentatively categorized into four stages. The first indication of formation was the separation of the innermost cell wall layer from the cell wall, which is followed by the deposition of egg-shaped polysaccharide on the inner cell wall surface. The size of the deposit area increased, while the thickness of the cell wall significantly decreased during the next stage. Finally, the condensed cellulosic lamella was invaginated into the deposition area, resulting in the formation of an elongated cell wall sac. The internal cell wall sac was composed of numerous fibers with different morphologies. Application of gelatin-methenamine-silver staining allowed us to observe the spatial distribution of cellulosic polysaccharides as electron-dense images. Correspondence and reprints: Graduate School of Science and Technology, Kyoto Institute of Technology, Matsugasaki, Sakyo, Kyoto 606-8585, Japan.     

Cell Walls and the Developmental Anatomy of the Brachypodium distachyon Stem Internode

While many aspects of plant cell wall polymer structure are known, their spatial and temporal distribution within the stem are not well understood. Here, we studied vascular system and fiber development, which has implication for both biofuel feedstock conversion efficiency and crop yield. The subject of this study, Brachypodium distachyon, has emerged as a grass model for food and energy crop research. Here, we conducted our investigation using B. distachyon by applying various histological approaches and Fourier transform infrared spectroscopy to the stem internode from three key developmental stages. While vascular bundle size and number did not change over time, the size of the interfascicular region increased dramatically, as did cell wall thickness. We also describe internal stem internode anatomy and demonstrate that lignin deposition continues after crystalline cellulose and xylan accumulation ceases. The vascular bundle anatomy of B. distachyon appears to be highly similar to domesticated grasses. While the arrangement of bundles within the stem is highly variable across grasses, B. distachyon appears to be a suitable model for the rind of large C₄ grass crops. A better understanding of growth and various anatomical and cell wall features of B. distachyon will further our understanding of plant biomass accumulation processes.     

Characterization of a multimetal resistant Burkholderia fungorum isolated from an e-waste recycling area for its potential in Cd sequestration

The Cd resistance mechanism of a Burkholderia strain isolated from paddy soil of an electronic waste recycling site was characterized for its potential application in metal bioremediation. 16S rRNA gene analysis revealed phylogenetic relatedness of this strain to Burkholderia fungorum. When grown in broth supplemented with Cd, this strain could decrease the bio-available Cd concentration through biosorption of Cd with its capsule or exopolysaccharide. Cd deposition in the cell envelope was confirmed by transmission electron microscopy and energy dispersive X-ray spectroscopy, but no Cd deposition was observed inside the cell. FT-IR revealed a major role of carboxyl, hydroxyl and amino groups along with a possible ion exchange mechanism in cation binding. X-ray powder diffraction analysis showed crystals formed on the exopolysaccharide from the Cd-supplemented culture. Thus our results indicated that sequestration of Cd by exopolysaccharide in the cell envelope might be one potential mechanism for Cd-detoxification in B. fungorum.