Viral abundance, decay, and diversity in the meso- and bathypelagic waters of the north atlantic

To elucidate the potential importance of deep-water viruses in controlling the meso- and bathypelagic picoplankton community, the abundance, decay rate, and diversity of the virioplankton community were determined in the meso- and bathypelagic water masses of the eastern part of the subtropical North Atlantic. Viral abundance averaged 1.4 x 10(6) ml(-1) at around 100 m of depth and decreased only by a factor of 2 at 3,000 to 4,000 m of depth. In contrast, picoplankton abundance decreased by 1 order of magnitude to the Lower Deep Water (LDW; 3,500- to 5,000-m depth). The virus-to-picoplankton ratio increased from 9 at about 100 m of depth to 110 in the LDW. Mean viral decay rates were 3.5 x 10(-3) h(-1) between 900 m and 2,750 m and 1.1 x 10(-3) h(-1) at 4,000 m of depth, corresponding to viral turnover times of 11 and 39 days, respectively. Pulsed-field gel electrophoresis fingerprints obtained from the viral community between 2,400 m and 4,000 m of depth revealed a maximum of only four bands from 4,000 m of depth. Based on the high viral abundance and the low picoplankton production determined via leucine incorporation, we conclude that the viral production calculated from the viral decay is insufficient to maintain the high viral abundance in the deep North Atlantic. Rather, we propose that substantial allochthonous viral input or lysogenic or pseudolysogenic production is required to maintain the high viral abundance detected in the meso- and bathypelagic North Atlantic. Consequently, deep-water prokaryotes are apparently far less controlled in their abundance and taxon richness by lytic prokaryotic phages than the high viral abundance and the virus-to-picoplankton ratio would suggest.     

Depth distributions of coral reef fishes: the influence of microhabitat structure,settlement, and post-settlement processes

Many coral reef fishes have restricted depth ranges that are established at settlement or soon after, but the factors limiting these distributions are largely unknown. This study examines whether the availability of microhabitats (reef substrata) explains depth limits, and evaluates whether juvenile growth and survival are lower beyond these limits. Depth-stratified surveys of reef fishes at Kimbe Bay (Papua New Guinea) showed that the abundance of new settlers and the cover of coral substrata differed significantly among depths. A field experiment investigated whether settling coral reef fishes preferred particular depths, and whether these depth preferences were dependent on microhabitat. Small patch reefs composed of identical coral substrata were set up at five depths (3, 6, 10, 15 and 20 m), and settlement patterns were compared to those on unmanipulated reef habitat at the same five depths. For all species, settlement on patch reefs differed significantly among depths despite uniform substratum composition. For four of the six species tested, depth-related settlement patterns on unmanipulated habitat and on patch reefs did not differ, while for the other two, depth ranges were greater on the patch reefs than on unmanipulated habitat. A second experiment examined whether depth preferences reflected variation in growth and survival when microhabitat was similar. Newly settled individuals of Chrysiptera parasema and Dascyllus melanurus were placed, separately, on patch reefs at five depths (as above) and their survival and growth monitored. D. melanurus, which is restricted to shallow depths, had highest survival and growth at the shallowest depth. Depth did not affect either survival or growth of C. parasema, which has a broader depth range than D. melanurus (between 6 and 15 m). This suggests that the fitness costs potentially incurred by settling outside a preferred depth range may depend on the strength of the depth preference.     

Viral Abundance, Decay, and Diversity in the Meso- and Bathypelagic Waters of the North Atlantic

To elucidate the potential importance of deep-water viruses in controlling the meso- and bathypelagic picoplankton community, the abundance, decay rate, and diversity of the virioplankton community were determined in the meso- and bathypelagic water masses of the eastern part of the subtropical North Atlantic. Viral abundance averaged 1.4 × 10⁶ ml⁻¹ at around 100 m of depth and decreased only by a factor of 2 at 3,000 to 4,000 m of depth. In contrast, picoplankton abundance decreased by 1 order of magnitude to the Lower Deep Water (LDW; 3,500- to 5,000-m depth). The virus-to-picoplankton ratio increased from 9 at about 100 m of depth to 110 in the LDW. Mean viral decay rates were 3.5 × 10⁻³ h⁻¹ between 900 m and 2,750 m and 1.1 × 10⁻³ h⁻¹ at 4,000 m of depth, corresponding to viral turnover times of 11 and 39 days, respectively. Pulsed-field gel electrophoresis fingerprints obtained from the viral community between 2,400 m and 4,000 m of depth revealed a maximum of only four bands from 4,000 m of depth. Based on the high viral abundance and the low picoplankton production determined via leucine incorporation, we conclude that the viral production calculated from the viral decay is insufficient to maintain the high viral abundance in the deep North Atlantic. Rather, we propose that substantial allochthonous viral input or lysogenic or pseudolysogenic production is required to maintain the high viral abundance detected in the meso- and bathypelagic North Atlantic. Consequently, deep-water prokaryotes are apparently far less controlled in their abundance and taxon richness by lytic prokaryotic phages than the high viral abundance and the virus-to-picoplankton ratio would suggest.     

An ecological study of the macrophytic vegetation of the Doodhadhari Lake,Raipur, M. P., India

Summary Physical factors operating in Doodhadhari Lake were studied periodically during 1967–68. Thermal stratification in the lake was found to be induced by solar radiation during daytime and destroyed by nocturnal cooling and mixing of the lake waters as evidenced by temperature records. Light intensities at different strata were found to be reduced by plant growth. At 0.5 m depth and 1 m depth considerable reduction in light intensities was found. The floating-leaved rooted plants and free-floating sudd communities curtailed the light transmission to 0.0 – 0.1% at 0.5 m depth. Visibility also decreases considerably owing to shading by the plants at different stations.A part of the thesis submitted for the Degree of Doctor of Philosophy.     

Assessing maximum depth distribution,vegetated area,and production of submerged macrophytes in shallow,turbid coastal lagoons of the southern Baltic Sea

Submerged macrophytes improve water quality in shallow coastal lagoons but eutrophication often resulted in a degradation of macrophytes. Management measures that protect and restore macrophyte stands require knowledge on what limits macrophyte distribution. Information on macrophyte production and distribution in the Darss-Zingst Bodden Chain (southern Baltic Sea) is lacking since an almost complete loss of submerged vegetation in the 1980s. Nutrient input was reduced in the 1990s and macrophytes seem to recover, although turbidity is high and light conditions are still poor. However, this recovery raised hope that returning macrophytes could stabilize sediments and improve water clarity. In this study, seasonal changes in photosynthesis–irradiance curves of selected macrophyte species were used to calculate potential primary production in different depths and turbidity situations. Bathymetry of the area is then used to assess depth distribution and vegetated area. Since the so-calculated depth limits correspond well with the actual depth distribution in the field, macrophyte depth distribution is concluded to be mostly determined by light conditions. Most macrophytes grow in very shallow areas up to 50 cm depth where also 70% of potential primary production takes place. Present light conditions do not support a further expansion of macrophyte distribution in the DZBC.     

黄河三角洲典型植被与地下水埋深和土壤盐分的关系

土壤盐分和地下水埋深是影响黄河三角洲植被发育和分布的重要因素.本文通过野外调查与统计分析,研究了黄河三角洲区域典型植被(翅碱蓬 柽柳、刺槐、芦苇和棉花)、地下水埋深、土壤盐分之间的关系.结果表明: 研究区地下水埋深显著影响土壤盐分,平均影响系数为0.327,地下水埋深在0.5～1.5 m的土壤盐渍化最严重;整个研究区内植被发育较差,其中,研究区78%面积的归一化植被指数(NDVI)<0.4,地下水埋深、土壤盐分对天然植被分布有显著影响;土壤盐分对研究区翅碱蓬-柽柳、刺槐、芦苇及棉花NDVI的影响显著,地下水埋深对翅碱蓬-柽柳NDVI的影响显著,对芦苇、棉花、刺槐NDVI的影响不显著.     

The sagittal dimension of the sinus frontalis, its wall thickness, distance from the lamina cribrosa, the depth of the so-called olfactory groove and the ethmoidal canal

The anterior and the posterior wall of the frontal sinus and its anterior-posterior depth on the deepest area were measured in the sagittal medial plan and 2 cm outside of the median. Also estimated were the distance between the posterior side of the anterior wall of the frontal sinus and the anterior border of the lamina cribrosa (mean value 17.4 mm). The depth of the olfactory rim was measured in the anterior, the middle, and the posterior third of the lamina cribrosa. There was measured also the lower surface of the lamina cribrosa and the level of the ethmoidal canals to the lamina cribrosa and its dehiscences.     

Effects of age, sex and abundance on the bathymetric pattern of American plaice in the southern Gulf of St Lawrence

American plaice Hippoglossoides platessoides density in September in the southern Gulf of St Lawrence was strongly related to depth, with peak densities at intermediate depths (70–90 m). Bathymetric pattern was similar for all ages of plaice (3–12 + year) and varied little among years. Densities were highest at similar depths for males and females, but depth distribution tended to be more spread out for females. Depth distribution was not significantly density dependent except for 10-and 11-year-old males and for females aged 12 years and older. In the three significant cases, depth distribution tended to spread out as abundance increased. Water temperature and depth were closely linked in the southern Gulf, but plaice depth preferences could not be attributed solely to temperature selection.     

三峡河谷地区柑橘大实蝇羽化、交配及产卵习性

对柑橘大实蝇Bactrocera(Tetracus) minax(Enderlein)的羽化、交配与产卵习性进行初步观察。结果表明,柑橘大实蝇的出土始期为每年的5月8日~5月14日,高峰为5月12日~5月18日,末期为5月30日~6月4日,近几年出土时间有所提前。在早熟蜜柑上主要产卵于果腰部,深度约为4.5mm;在中晚熟蜜柑上主要产卵于果蒂部,深度约为4.1mm;在脐橙上主要产卵于果脐部,深度约为9.7mm;在柚上主要产卵于果蒂和果腰部,深度约为13.0mm。观察结果也与以往记载有所不同。     

Biophysical factors affecting the distribution of demersal fish around the head of a Submarine Canyon off the Bonney Coast, South Australia

We sampled the demersal fish community of the Bonney Canyon, South Australia at depths (100–1,500 m) and locations that are poorly known. Seventy-eight species of demersal fish were obtained from 12 depth-stratified trawls along, and to either side, of the central canyon axis. Distributional patterns in species richness and biomass were highly correlated. Three fish assemblage groupings, characterised by small suites of species with narrow depth distributions, were identified on the shelf, upper slope and mid slope. The assemblage groupings were largely explained by depth (ρw = 0.78). Compared to the depth gradient, canyon-related effects are weak or occur at spatial or temporal scales not sampled in this study. A conceptual physical model displayed features consistent with the depth zonational patterns in fish, and also indicated that canyon upwelling can occur. The depth zonation of the fish assemblage was associated with the depth distribution of water masses in the area. Notably, the mid-slope community (1,000 m) coincided with a layer of Antarctic Intermediate Water, the upper slope community (500 m) resided within the core of the Flinders Current, and the shelf community was located in a well-mixed layer of surface water (<450 m depth).     

Relationship between body condition of American alligators and water depth in the Everglades, Florida

Feeding opportunities of American alligators (Alligator mississippiensis) in freshwater wetlands in south Florida are closely linked to hydrologic conditions. In the Everglades, seasonally and annually fluctuating surface water levels affect populations of aquatic organisms that alligators consume. Since prey becomes more concentrated when water depth decreases, we hypothesized an inverse relationship between body condition and water depth in the Everglades. On average, condition of adult alligators in the dry season was significantly higher than in the wet season, but this was not the case for juveniles/subadults. The correlation between body condition and measured water depth at capture locations was weak; however, there was a significant negative correlation between the condition and predicted water depth prior to capture for all animals except for spring juveniles/subadults which had a weak positive condition–water depth relationship. Overall, a relatively strong inverse correlation occurred at 10–49 days prior to the capture day, suggesting that current body condition of alligators may depend on feeding opportunities during that period. Fitted regression of body condition on water depth (mean depth of 10 days when condition-water depth correlation was greatest) resulted in a significantly negative slope, except for spring adult females and spring juveniles/subadults for which slopes were not significantly different from zero. Our results imply that water management practices may be critical for alligators in the Everglades since water depth can affect animal condition in a relatively short period of time.     

Factors determining the distribution of the sea pansy,Renilla kollikeri,in a subtidal sand-bottom habitat

Summary The biological and physical factors that affect the distribution of the subtidal, epibenthic, sand-dwelling cnidarian Renilla kollikeri along a depth gradient from 2 to 13 m were determined by manipulative field and laboratory experiments. The sea pansy's nearshore distributional limit (2.5 m in depth) was set by the animal's inability to remain anchored on the bottom in the face of increasing wave surge associated with shallow water. Renilla was outcompeted for space by the sand dollar Dendraster excentricus in an area between 6 and 9 m in depth and was largely excluded from the substrate when sand dollar densities exceeded 350/m². Predator-prey interactions also influence the Renilla distribution. The asteroid Astropecten brasiliensis feeds on and removes Renilla 40 mm and less in diameter from areas seaward of the sand dollar bed (9 m in depth). Astropecten did not forage in the shallow area where Renilla was most abundant because of its intolerance to wave surge and because of its difficulty in crossing the sand dollar bed. The nudibranch Armina californica fed on Renilla throughout the depth gradient but did not remove colonies greater than 20 mm in diameter because of the Armina- specific escape behavior of Renilla. The foraging behavior of Armina was also curtailed by strong surge conditions. The nearshore area (3–6 m in depth) of high Renilla density was a refuge in which animals that had settled from the plankton could escape predation. As the animals grow they lose their ability to anchor in the substrate in shallow water and thus move into deeper water. The results of multiway interactions among sets of three species, particularly the beneficial results of the competitive interaction with Dendraster in light of the activities of the predators are discussed with reference to the abundance and distribution of Renilla.     

Spatial distribution of microbial biomass,activity, community structure,and the biodegradation of linear alkylbenzene sulfonate (LAS) and linear alcohol ethoxylate (LAE) in the subsurface

The vertical distribution of microbial biomass, activity, community structure and the mineralization of xenobiotic chemicals was examined in two soil profiles in northern Wisconsin. One profile was impacted by infiltrating wastewater from a laundromat, while the other served as a control. An unconfined aquifer was present 14 meters below the surface at both sites. Biomass and community structure were determined by acridine orange direct counts and measuring concentrations of phospholipid-derived fatty acids (PLFA). Microbial activity was estimated by measuring fluorescein diacetate (FDA) hydrolysis, thymidine incorporation into DNA, and mixed amino acid (MAA) mineralization. Mineralization kinetics of linear alkylbenzene sulfonate (LAS) and linear alcohol ethoxylate (LAE) were determined at each depth. Except for MAA mineralization rates, measures of microbial biomass and activity exhibited similar patterns with depth. PLFA concentration and rates of FDA hydrolysis and thymidine incorporation decreased 10–100 fold below 3 m and then exhibited little variation with depth. Fungal fatty acid markers were found at all depths and represented from 1 to 15% of the total PLFAs. The relative proportion of tuberculostearic acid (TBS), an actinomycete marker, declined with depth and was not detected in the saturated zone. The profile impacted by wastewater exhibited higher levels of PLFA but a lower proportion of TBS than the control profile. This profile also exhibited faster rates of FDA hydrolysis and amino acid mineralization at most depths. LAS was mineralized in the upper 2 m of the vadose zone and in the saturated zone of both profiles. Little or no LAS biodegradation occurred at depths between 2 and 14 m. LAE was mineralized at all depths in both profiles, and the mineralization rate exhibited a similar pattern with depth as biomass and activity measurements. In general, biomass and biodegradative activities were much lower in groundwater than in soil samples obtained from the same depth.     

Seasonal variation of mixing depth and its influence on phytoplankton dynamics in the Zeya reservoir, China

In reservoirs or lakes, mixing depth affects growth and loss rates of phytoplankton populations. Based on 1-year data from the Zeya reservoir, China, we scaled the mixing depth throughout a whole year by utilizing cluster analysis, and then investigated its influence on phytoplankton dynamics and other physical and chemical parameters. Over the whole year, all physical and chemical parameters except TN and temperature had significant correlations with mixing depth, indicating that mixing depth is one of the important driving factors influencing water environment. According to mixing depth, a year can be divided into three different periods, including the thermally stratified period, isothermally mixed period, and transition period between them. When considering the former two different periods separately, mixing depth had no correlation with the phytoplankton biovolume. However, over the whole year a significant correlation was observed, which indicated that the influence of mixing depth on phytoplankton growth in the Zeya reservoir still followed Diehl’s theory. Furthermore, according to the steady-state assumption, a unimodal curve (mixing depth—phytoplankton biovolume) with a significant peak appearing at a mixing depth of 2 m was observed, closely agreeing with Diehl’ prediction.     

Spatial variability in the distribution of dominant shallow-water benthos at Adelaide Island, Antarctica

Studies from temperate and tropical regions have shown that variability in the distribution of benthos exists at different spatial scales. There are very few similar studies from polar systems, the shallows of which represent some of the most intensely disturbed habitats on the planet. Variability in the abundances of the five most common macrofauna was examined at three spatial scales, metres, tens of metres and hundreds of metres, in the shallows (5-25 m depth) of Adelaide Island, West Antarctic Peninsula. Whilst significant community change occurs along a depth gradient at the study sites, not all of the common species studied showed clear depth-related patterns of distribution. Furthermore, although abundance patterns varied between the organisms, consistent depth-related trends in the spatial scale contributing most to the variability were observed for four of the five species. For four species the relative importance of large-scale variability (between sites) decreased from 5 to 25 m depth, whilst small-scale variability (between replicates) increased along the depth gradient. Variation between sites is probably largely driven by ice disturbance, which becomes less frequent with depth. Conversely, small-scale patchiness is promoted by biological interactions, which become relatively more influential as community complexity and species richness increase along the depth gradient.     

Buoyancy control in diving behavior of the loggerhead turtle,Caretta caretta

Neutral buoyancy at the stationary depth is advantageous for diving animals. The adjustment of the air inspiration before diving can be a mechanism of buoyancy control for diving animals with lungs. The stationary depth of neutral buoyancy becomes deeper with larger inspiration. Our aim was to examine whether the loggerhead sea turtle,Caretta caretta regulates the buoyancy to be neutral at the stationary depth of the dive. During an internesting period of the breeding season, we recorded the diving pattern of an adult female using a time-depth recorder and a time-swim distance recorder. The dives were classified into four types (Types 1 to 4) based on the time-depth profile. Types-3 and 4 (66% of the total dive duration) have three phases in each dive: (1) first descent, (2) gradual ascent (stationary period), and (3) final ascent. In the gradual ascent phase, the turtle stayed at a certain depth without swimming. This means that the turtle was neutrally buoyant during the gradual ascent phase. The depth of the gradual ascent phase was positively correlated with the dive duration, supporting the hypothesis that neutral buoyancy of the loggerhead turtle is achieved by the air in their lungs.     

Diversity and species distribution of polychaetes,isopods and bivalves in the Atlantic sector of the deep Southern Ocean

We examined deep-sea benthic data on polychaetes, isopods and bivalves from the Atlantic sector of the Southern Ocean. Samples were taken during the expeditions EASIZ II (1998), ANDEEP I and II (2002) (depth: 742–6,348 m). The range between sites varies from 3 to 1,900 km. Polychaetes (175 species in total) and isopods (383 species) had a high proportion of species restricted to one or two sites (72 and 70%, respectively). Bivalves (46 species) had a higher proportion of species represented at more sites. Beta diversity (Whittaker and Jaccard) was higher for polychaetes and isopods than for bivalves. The impact of depth on species richness was not consistent among groups; polychaetes showed a negative relationship to depth, isopods displayed highest richness in the middle depth range (2,000–4,000 m), whereas bivalves showed no clear relationship to depth. Species richness was not related to latitude (58–74°S) or longitude (22–60°W) for any group.     

Relationship of Geographic Distance,Depth, Temperature,and Viruses with Prokaryotic Communities in the Eastern Tropical Atlantic Ocean

The richness and biogeographical distribution pattern of bacterial and archaeal communities was assessed by terminal restriction fragment length polymorphism analysis of polymerase chain reaction-amplified fragments of the 16S rRNA gene at the surface (15-25 m depth), in the deep chlorophyll maximum layer (DCM; 50 m depth), and deep waters (75-1000 m depth) of the eastern tropical Atlantic Ocean. Additionally, prokaryotic and viral abundance and the frequency of infected prokaryotic cells (FIC) were determined along with physico-chemical parameters to identify factors influencing prokaryotic richness and biogeography. Viral abundance was highest in the DCM layer averaging 45.5 x 10(6) ml(-1), whereas in the mixed surface layer and in the waters below the DCM, average viral abundance was 11.3 x 10(6) and 4.3 x 10(6) ml(-1), respectively. The average estimate of FIC was 8.3% in the mixed surface layer and the DCM and 2.4% in deeper waters. FIC was positively related to prokaryotic and viral abundance and negatively to archaeal richness. There was no detectable effect of geographic distance (maximum distance between stations approximately 4600 km) or differences between water masses on bacterial and archaeal community composition. Bacterial communities showed a clear depth zonation, whereas changes in archaeal community composition were related to temperature and FIC. The results indicate that planktonic archaeal virus host systems are a dynamic component of marine ecosystems under natural conditions.     

Abundance, distribution, reproduction and diet of notacanthid fishes from the north-east Atlantic

Notacanthid fishes were among the 10 most abundant species sampled in research surveys using fine meshed trawls fished to depths of 3000 m in the Rockall Trough and 4500 m in the Porcupine Seabight between 1975 and 1992. Two species, Noctacanthus bonapartei and Polyacanthonotus rissoanus , were dominant but their population structure and certain aspects of morphometric and reproductive biology differed between the two sampling areas. In general, sex ratios were skewed in favour of females, size increased with depth and male and immature individuals were restricted to shallower depth zones. Fecundity was highly correlated with total weight and showed a positive relationship with species' size. Ovaries contained two batches of eggs and the spawning season was protracted, occurring mostly over winter months. Dietary studies showed a dependence on benthic macro fauna though the two dominant species have different dentition and exploit different trophic niches. In the Rockall Trough, peak abundances for N. bonapartei and P. rissoanus occurred in the 750 m and 1250 m zones, respectively, lying within the depth range currently exploited by commercial deep-water trawls (600–1400 m). The probable impacts of commercial operations on notacanthid fishes are discussed.     

Depth telemetry from the sixgill shark,Hexanchus griseus,at Bermuda

Synopsis Transmitters were attached to two female sixgill sharks, Hexanchus griseus, which were followed in course and depth for periods of 4 and 2 days. The sharks swam slowly (10 to 20 cm s^-1) and continuously, generally moving parallel to the bottom contours within a limited (less than 10 km long) area. The greatest depth was an excursion to 1500 m, but otherwise the sharks remained near the bottom at depths ranging from 600 to 1100 m.