Evolution of Pacific Rim diving beetles sheds light on Amphi‐Pacific biogeography

The origin of biodiversity in the Neotropics predominantly stems either from Gondwana breakup or late dispersal events from the Nearctic region. Here, we investigate the biogeography of a diving beetle clade whose distribution encompasses parts of the Oriental region, the Indo‐Australian archipelago (IAA) and the Neotropics. We reconstructed a dated molecular phylogeny, inferred diversification dynamics and estimated ancestral areas under different biogeographic assumptions. For the Oriental region and the IAA, we reveal repeated and complex colonization patterns out of Australia, across the major biogeographic lines in the region (e.g. Wallace's Line). The timing of colonization events across the IAA broadly coincides with the proposed timing of the formation of major geographic features in the region. Our phylogenetic hypothesis recovers Neotropical species nested in two derived clades. We recover an origin of the group in the early Eocene about 55 million yr ago, long after the break‐up of Gondwana initiated, but before a complete separation of Australia, Antarctica and the Neotropics. When allowing an old Gondwanan ancestor, we reconstruct an intricate pattern of Gondwanan vicariance and trans‐Pacific long‐distance dispersal from Australia toward the Neotropics. When restricting the ancestral range to more plausible geological area combinations in the Eocene, we infer an Australian origin with two trans‐Pacific long‐distance dispersal events toward the Neotropics. Our results support on one hand a potential Gondwanan signature associated with regional extinctions in the Cenozoic and with Antarctica serving as a link between Australia and the Neotropics. On the other hand, they also support a trans‐Pacific dispersal of these beetles toward the Andean coast in the Oligocene.     

Microbiological Evaluation of Pacific Shrimp Processing

Microbiological evaluation of Pacific shrimp (Pandalus jordani) processing was made from samples obtained at five key processing points. The microbial count of raw shrimp ranged from 1.3 x 10(6) to 3.0 x 10(6). The initial microbial flora, in order of predominance, was Acinetobacter-Moraxella, Flavobacterium, Pseudomonas, gram-positive cocci, and Bacillus species. No yeasts were isolated. Differences in processing practices influenced both microbial count and the shrimp flora. The microbial load, however, always increased after peeling and sorting operations and decreased after cooking, washing, and brining steps. Significantly, the gram-positive cocci were recovered with increasing frequency after each processing step, reaching 76% of the total load in a final product. Most of them, however, were coagulase-negative.     

Morphology and ecology of Pacific sturgeons

The six North Pacific members of the genus Acipenser have generally similar environmental requirements and share several specific morphological features. This Pacific group consists of green sturgeon, Acipenser medirostris, Sakhalin sturgeon, A. mikadoi, white sturgeon, A. transmontanus, Chinese sturgeon, A. sinensis, Dabry’s sturgeon, A. dabryanus and Amur sturgeon, A. schrenkii. A qualitative morphological examination of these species revealed synapomorphic characters that suggest close phyolgenetic relationships resulting from common ancestry of eastern and western species within the Pacific Rim. An evolutionary taxonomic approach, considering a reduction of characters from east to west, would suggest an Asian ancestry for all Pacific sturgeons. In contrast however, a phylogenetic approach using derived character states suggests a North American ancestry. Besides a common ancestry for Chinese and American sturgeons, the taxonomic status of A. mikadoi is discussed.     

The genetic structure of Pacific Islanders

Human genetic diversity in the Pacific has not been adequately sampled, particularly in Melanesia. As a result, population relationships there have been open to debate. A genome scan of autosomal markers (687 microsatellites and 203 insertions/deletions) on 952 individuals from 41 Pacific populations now provides the basis for understanding the remarkable nature of Melanesian variation, and for a more accurate comparison of these Pacific populations with previously studied groups from other regions. It also shows how textured human population variation can be in particular circumstances. Genetic diversity within individual Pacific populations is shown to be very low, while differentiation among Melanesian groups is high. Melanesian differentiation varies not only between islands, but also by island size and topographical complexity. The greatest distinctions are among the isolated groups in large island interiors, which are also the most internally homogeneous. The pattern loosely tracks language distinctions. Papuan-speaking groups are the most differentiated, and Austronesian or Oceanic-speaking groups, which tend to live along the coastlines, are more intermixed. A small “Austronesian” genetic signature (always <20%) was detected in less than half the Melanesian groups that speak Austronesian languages, and is entirely lacking in Papuan-speaking groups. Although the Polynesians are also distinctive, they tend to cluster with Micronesians, Taiwan Aborigines, and East Asians, and not Melanesians. These findings contribute to a resolution to the debates over Polynesian origins and their past interactions with Melanesians. With regard to genetics, the earlier studies had heavily relied on the evidence from single locus mitochondrial DNA or Y chromosome variation. Neither of these provided an unequivocal signal of phylogenetic relations or population intermixture proportions in the Pacific. Our analysis indicates the ancestors of Polynesians moved through Melanesia relatively rapidly and only intermixed to a very modest degree with the indigenous populations there.     

Genetic Population Structure of Pacific Hake, Merluccius productus, in the Pacific Northwest

This study presents the first protein electrophoretic study of population structure within the Georgia Basin Pacific hake Distinct Population Segment, as defined under the U.S. Endangered Species Act. Forty-one allozyme loci (29 polymorphic) were analyzed in samples from three Pacific hake spawning populations on the west coast of North America: (1) Port Susan, Puget Sound, Washington (three temporal samples); (2) south-central Strait of Georgia, British Columbia, Canada (two temporal samples); and (3) offshore of southern California (two temporal samples) (total n = 664). Mean heterozygosity over all loci was 12–13% for all populations. Within-population temporal samples were not significantly different from one another, but statistically significant differences were detected at 15 of the 29 polymorphic loci (p < 0.05) among the three populations. Differences at eight of these loci were highly significant (p < 0.001): ADA ^*, ALAT ^*, bGALA ^*, GPI-A ^*, sIDHP ^*, LDH-A ^*, MPI ^*, and PEP-B ^*. The two Georgia Basin populations were significantly different at six loci: bGALA ^*, sIDHP ^*, LDH-A ^*, MPI ^*, PGK ^*, and PGM-2 ^* (p < 0.05). Nei's genetic distance (D) was 0.0006 between Port Susan and Strait of Georgia pooled temporal samples, and 0.005 between these populations and offshore Pacific hake. F_ST was 0.02 and 0.0046 among all three populations and among the Georgia Basin populations, respectively. Both F_ST estimates were significantly greater than zero, and the results suggest a high degree of demographic isolation among all three populations.     

Pacific Voices

Pacific Voices: Worlds within Our Community. Burke Museum of Natural and Cultural History, Seattle, Washington, permanent installation.     

Depth and movement behaviour of the Pacific sleeper shark in the north-east Pacific Ocean

Satellite-linked radio telemetry was used to study the geographic movements and vertical movement behaviour of the Pacific sleeper shark Somniosus pacificus . The fish were tagged near Steller sea lion Eumetopias jubatus rookeries in the Gulf of Alaska during periods when Steller sea lions pups were most vulnerable to predation; when Steller sea lion pups first enter the water (July to August) and when Steller sea lion pups are weaned (April to May). Final locations recovered from most Pacific sleeper sharks (76%) were within 100 km of release locations, 16% were within 100–250 km and 8% were within 250–500 km. The most striking behavioural feature was their extensive, nearly continuous vertical movements. Median daily depth range was 184 m; the most time (61%) was spent between 150 and 450 m, but ascents above 100 m were common (58% of days). Median vertical movement rate was 6 km day⁻¹ and steady. The longest period of continuous vertical movement (> 60 m h⁻¹) was 330 h. Systematic vertical oscillations were most common (60%), followed by diel vertical migrations (25%) and irregular vertical movements (15%). The Pacific sleeper sharks travelled below the photic zone during the day and approached the surface at night. Pacific sleeper sharks appear to employ a stealth and ambush hunting strategy that incorporates slow vertical oscillations to search for prey, and cryptic colouration and cover of darkness to avoid detection by potential prey. The depth and geographic range of Pacific sleeper shark and Steller sea lions overlap near four important Steller sea lion rookeries in the northern Gulf of Alaska, so the potential exists for predation to occur. None of the tissues in the stomachs of the 198 Pacific sleeper sharks collected during a companion diet study, however, were identified as Steller sea lion.     

Predation of doggertooth on immature Pacific salmon

First occurrence of doggertooth predation on immature Pacific salmon is described from the Okhotsk Sea, off the Northern Kurile Islands. The possible significance of doggertooth for salmon abundance is discussed.     

Seasonal occurrence of southeast Pacific blue whale songs in southern Chile and the eastern tropical Pacific

Passive acoustic data were collected January 2012 to April 2013 at four sites in the Chiloense Ecoregion (CER) in southern Chile (≈43°S–44°S, 71°W–73°W) and 1996–2002 from one site in the eastern tropical Pacific (ETP) (8°S, 95°W). Automatic detectors were used to detect the two songs (SEP1 and SEP2) described for southeast Pacific (SEP) blue whales. There was a strong seasonal pattern of occurrence of SEP songs in the CER from December to August, peaking March to May. In the ETP, the occurrence of songs was an order of magnitude lower but songs were present year‐round, with a peak around June. These findings support austral summer/autumn seasonal residency in the CER and a seasonal movement of blue whales towards the ETP during June/July, returning in December. Interannual differences in the ETP were possibly linked to the 1997–1998 El Niño event. At both study sites, SEP2 was significantly more common than SEP1; both songs largely followed the same temporal trends. These findings contribute to our understanding of the seasonal movements of endangered SEP blue whales and can inform conservation strategies, particularly in the CER coastal feeding ground. We recommend future year‐round passive acoustic studies in the CER and the ETP (e.g., near the Galapagos Islands), ideally coupled with oceanographic data.     

Flower scents from the Pacific

For a long time, exotic scents from the islands of the South Pacific have universally been appreciated. Most frequently, fragrant flowers (e.g., frangipani, jasmine sambac, tiaré, pua kenikeni) are used locally for ornamental purposes such as flower garlands (leis). Despite their powerful and delightful fragrance, very few of these flowers have been commercially employed in this part of the world for perfume manufacturing. Creative perfumers are nevertheless strongly interested to better understand these fragrances and to use them, either genuine or artificially reconstituted. Analytical results on the fragrance of these flowers are reported, together with some economical considerations.     

The spatial patchiness of Pacific herring larvae

Synopsis The spatial patchiness at age was measured for Pacific herring,Clupea harengus pallasi, larvae of a small coastal inlet. Lloyd's index of patchiness decreased from 3.8 at hatching to a minimum of 1.5 at 25–30 d and then increased to 2.5 at 50 d. This two-cycle pattern resembles that measured by others for the larvae of other species of schooling pelagic fishes. It differs by being several times lower in magnitude. This is attributed to two factors: (1) a rapid reduction in patchiness from a relatively high level in the demersal egg interval to a lower level in the planktonic larval interval as larvae are released into the water column over a period of 2–4 days, and (2) foraging by larval herring for prey that are larger, more dilute, and less patchy than the prey of other, smaller pelagic fish larvae.     

Pacific collaboration to eliminate lymphatic filariasis

A regional programme to combat lymphatic filariasis in the Pacific islands is showing great promise as it reaches its halfway point. The Pacific Programme to Eliminate Lymphatic Filariasis (PacELF), established in 1999, aims to eliminate the disease from the Pacific by 2010 - ten years ahead of the global target. Set up with support from Australia, and now funded primarily by Japan and underpinned by the Word Health Organization, PacELF is providing evidence that Pacific nations can work cooperatively to rid the region of one of its worst scourges, in addition to discovering techniques and new tools that should be of use in other regions.     

The survival of Pacific salmon in the North Pacific in the winter and spring

The effects of various factors (water temperature, food availability, predation, and the size of juveniles) on the survival of Pacific salmons during overwintering in open ocean waters are analyzed based on the data collected by expeditions of the Pacific Research Fisheries Center to the northwestern Pacific Ocean in the winter and spring seasons of 1986–1992 and 2009–2011, as well as in the summer seasons of 2004–2011. The temperature factor is unlikely to be a direct cause of the high salmon mortality in the ocean during the winter, as there is no clear evidence that it affects food availability for salmon. The biomass of forage zooplankton in the Subarctic Front zone in February and March is lower than that in April and June–July, but it does not decrease substantially in the winter months. Taking the fact into account that the total abundance of planktivorous nekton is also low in this area during the winter, food availability cannot be considered a crucial factor that has a serious influence on salmon mortality in this period. The difference in feeding intensity between salmon species and between their size groups in the winter and spring is determined by their life strategies. The observed variations in feeding intensity and lipid accumulation from autumn to spring are caused by cyclic seasonal changes in physiological processes in salmon rather than by the amount and availability of food resources. The low abundance of predators in subarctic waters and in the Subarctic Front zone in the winter also cannot reduce salmon abundance substantially. The probable relationship between the critical size of juveniles and their survival in the winter is considered using the example of a Sea of Okhotsk stock of pink salmon. The conclusion is that the size of juvenile pink salmon cannot always be used as a predictor of the values of its subsequent returns, because survival of salmon during the ocean period of life depends both on the initial conditions during downstream migration and on the ocean conditions that form in the winter. Thus, none of the factors above can be considered as strictly limiting the abundance of Pacific salmon in the winter. It is more probable that the survival of salmon in the ocean is influenced, to a lesser or greater extent, by the combined effects of abiotic and biotic factors.     

Gracilaria vermiculophylla: A western Pacific species of Gracilariaceae (Rhodophyta) first recorded from the eastern Pacific

We report Gracilaria vermiculophylla (Ohmi) Papenfuss from the Pacific coast of North America based on a morphoanatomical revision and comparison of sequences of the nuclear gene coding for the small subunit of ribosomal RNA and the internal transcribed spacers of populations from Baja California, Mexico and Hiroshima, Japan. It is the first convincing report of this species out of its center of distribution in western north Pacific, where it has been considered as a synonym of former ‘G. verrucosa’ records. G. vermiculophylla also occurs in central California as indicated by internal transcribed spacer sequences of a previously unknown Gracilaria Greville material. In the northeastern Pacific G. vermiculophylla is characterized by a robust somewhat vermiform, well‐branched cylindrical thallus, with gradual cell size transition from cortex to medulla, deep spermatangial conceptacles, regular chains of carposporangia and carposporangial initials, downwardly oriented tubular nutritive cells, but rarely with upwardly oriented tubular nutritive cells. In some features of its cystocarp anatomy G. vermiculophylla is related to Gracilariopsis E. Y. Dawson or Hydropuntia Montagne and it is a relevant species for discussions about Gracilariaceae genera.     

Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes

Killer whales (Orcinus orca) are the most widely distributed marine mammals and have radiated to occupy a range of ecological niches. Disparate sympatric types are found in the North Atlantic, Antarctic and North Pacific oceans, however, little is known about the underlying mechanisms driving divergence. Previous phylogeographic analysis using complete mitogenomes yielded a bifurcating tree of clades corresponding to described ecotypes. However, there was low support at two nodes at which two Pacific and two Atlantic clades diverged. Here we apply further phylogenetic and coalescent analyses to partitioned mitochondrial genome sequences to better resolve the pattern of past radiations in this species. Our phylogenetic reconstructions indicate that in the North Pacific, sympatry between the maternal lineages that make up each ecotype arises from secondary contact. Both the phylogenetic reconstructions and a clinal decrease in diversity suggest a North Pacific to North Atlantic founding event, and the later return of killer whales to the North Pacific. Therefore, ecological divergence could have occurred during the allopatric phase through drift or selection and/or may have either commenced or have been consolidated upon secondary contact due to resource competition. The estimated timing of bidirectional migration between the North Pacific and North Atlantic coincided with the previous inter-glacial when the leakage of fauna from the Indo-Pacific into the Atlantic via the Agulhas current was particularly vigorous.     

Comparative-enzymologic study of phosphatase activity of Pacific hydrobionts

Activities of acid phosphatase are studied with use as substrates of phenyl phosphate, α- and β-glycerophosphates in various organs and tissues of a large group of marketable hydrobionts of the Pacific basin (12 fish species, 7 invertebrate species, and one mammalian species) and of alkaline phosphatase in various organs of the Commander (Berryteuthis magister) and the New Zealand (Nototodarus sloani sloani) squids. Intertissue and interspecies differences have been revealed in the substrate and inhibitory specificity of the studied enzyme preparations. The method of isolation and a partial purification of preparations of acid phosphatase from tissue of gonads and of alkaline phosphatase from tissues of kidney and liver of individuals of marketable squid species are described.     

Spatial distribution and features of biology of Pacific sleeper shark Somniosus pacificus in the North Pacific

The results of the investigations of spatial and vertical distribution of Pacific sleeper shark Somniosus pacificus in the North Pacific Ocean conducted for many years are presented. In addition, the size distribution and features of biology of the species are studied. The largest abundance of the species is registered in the Bering Sea, western Gulf of Alaska, eastern Aleutian Islands, and Pacific waters of northern Kuril Islands and southeastern Kamchatka. The species is the most abundant near the bottom at the depth from 200 to 700 m and in the pelagic waters at a depth of 100–200 m. The average depths of the catches of Pacific sleeper shark substantially change over the year reaching minimum values in June and maximum values in December. Vertical daily migrations (to the water column at night and to the bottom during the day) are registered. The catches are represented by fish 26–352 cm in length, and sharks 100–200 cm in length prevail. The males are noticeably smaller than the females. In general, condition of the fishes decreases and feeding intensity increases with growth. Food composition substantially changes with the increase of body length: consumption of squids decreases and consumption of crustaceans, fishes, and fishery wastes increases. The food composition is slightly different in the females and males.     

Eco-evolutionary dynamics in Pacific salmon

Increasing acceptance of the idea that evolution can proceed rapidly has generated considerable interest in understanding the consequences of ongoing evolutionary change for populations, communities and ecosystems. The nascent field of 'eco-evolutionary dynamics' considers these interactions, including reciprocal feedbacks between evolution and ecology. Empirical support for eco-evolutionary dynamics has emerged from several model systems, and we here present some possibilities for diverse and strong effects in Pacific salmon (Oncorhynchus spp.). We specifically focus on the consequences that natural selection on body size can have for salmon population dynamics, community (bear-salmon) interactions and ecosystem process (fluxes of salmon biomass between habitats). For example, we find that shifts in body size because of selection can alter fluxes across habitats by up to 11% compared with ecological (that is, numerical) effects. More generally, we show that selection within a generation can have large effects on ecological dynamics and so should be included within a complete eco-evolutionary framework.     

Chromodorid opisthobranch Mollusca from the Indo-West Pacific

Seven species of Chromodoris and one of Hypselodoris are described from collections from the Indo-West Pacific. Of the species of Chromodoris, two are from Fiji, two are from the Gulf of Kutch in north-western India, one being a new species, and three are from the coast of East Africa. Hypselodoris infucata is described from both the Gulf of Kutch and Zanzibar.
C. youngbleuthi and C. inopinata are compared with published accounts of five other species with red reticulate markings (C. tinctoria, C. alderi, C. reticulata, C. obsoleta and Risbecia reticulata) and it is suggested that apart from C. alderi, which is considered a junior synonym of C. tinctoria, all these species are distinct.
C. inornata Pease, which has often been confused with other forms with red or purple spots, is compared with published information on eight other species (C. petechialis, C. daphne, C. festiva (Angas), C. splendida, C. tenuis, C. tumulifera, C. splendens and C. inornata Gohar & Soliman). It is suggested that all these forms are distinct and that C. inornata Gohar & Soliman, which is distinct from C. inornata Pease, should take the name Chromodoris dollfusi Pruvot-Fol 1933.