锌_7与镉_7－金属硫蛋白清除羟自由基的比较

分离及纯化兔肝金属硫蛋白制备去金属金属硫蛋白、锌７与镉７金属硫蛋白．在不同ｐＨ条件下,比较后二者清除羟自由基能力;在ｐＨ６条件下,比较锌７－金属硫蛋白与有关蛋白和无机锌盐清除羟自由基效果．结论是在近生理ｐＨ条件下锌７－金属硫蛋白清除羟自由基能力远强于镉７－金属硫蛋白．金属硫蛋白清除羟自由基的能力主要来源于蛋白中处于还原态的流基．     

金属硫蛋白及其生物学功能

金属硫蛋白(metallothionein, MT) 是一类富含半胱氨酸的低分子质量蛋白质,已鉴定4种亚型：MT-1、MT-2、MT-3和MT-4,基于各亚型功能的相对异质性而使MT呈现其生物学作用的多样性。金属硫蛋白通过与金属离子结合而参与基因表达调控和机体的重金属解毒过程;金属硫蛋白通过抑制多种氧化应激途径而保护细胞免受损伤;金属硫蛋白通过参与细胞的增殖、分化和凋亡的调节而影响肿瘤及其他重大疾病的发生发展。本文在金属硫蛋白的结构和分类的基础上综述其生物学作用及其相关机制。     

锌7与镉7－金属硫蛋白清除羟自由基的比较

分离及纯化兔肝金属硫蛋白.制备去金属金属硫蛋白、锌₇与镉₇金属硫蛋白．在不同pH条件下,比较后二者清除羟自由基能力;在pH6条件下,比较锌₇－金属硫蛋白与有关蛋白和无机锌盐清除羟自由基效果．结论是在近生理pH条件下锌₇－金属硫蛋白清除羟自由基能力远强于镉₇－金属硫蛋白．金属硫蛋白清除羟自由基的能力主要来源于蛋白中处于还原态的流基．     

锌_7-金属硫蛋白与镉_7-金属硫蛋白抗羟自由基保护线粒体效应

制备了Ｚｎ７－与Ｃｄ７－金属硫蛋白。分离出大鼠心肌线粒体。用电子自旋共振自旋标记方法测定线粒体膜脂流动性及膜蛋白构象、运动性。分析了线粒体Ｃａ２＋－Ｍｇ２＋－ＡＴＰ酶活性及４５Ｃａ摄入。羟自由基损伤使线粒体膜脂流动性下降,膜蛋白构象改变及运动性降低,线粒体Ｃａ２＋－Ｍｇ２＋－ＡＴＰ酶活性降低及４５Ｃａ摄入活性下降。Ｚｎ７－金属硫蛋白与Ｃｄ７－金属硫蛋白均有抗羟自由基、保护心肌线粒体的作用,且Ｚｎ７－金属硫蛋白的作用比Ｃｄ７－金属硫蛋白的作用更明显。原因是去金属蛋白对Ｃｄ２＋的亲和力比对Ｚｎ２＋高１００００倍,因而在近ｐＨ中性的环境中,Ｚｎ７－金属硫蛋白将释放更多Ｚｎ２＋,并暴露较多的还原态巯基。     

金属硫蛋白与医学

金属硫蛋白是一类富含巯基与金属的内源性蛋白,化学结构极为特殊,该蛋白的为具有很强的诱导性,金属,糖皮质激素,某些化的和应激状态均可诱导其生成,在炎症等应激过程中ＩＬ－６可能为诱导者。在不降低疗效的情况下该蛋白可解除抗肿瘤药物ＣＤＤＰ的抗药性密切有关,金属硫蛋白与炎性肠病,妊娠中毒症,肝脏疾患等多种疾病密切相关。     

二价铅离子与金属硫蛋白相互作用的研究

通过紫外吸收光谱和平衡透析法研究了二价铅离子同脱金属硫蛋白（ａｐｏ－ＭＴ）、锌－金属硫蛋白（Ｚｎ－ＭＴ）的相互作用,证实Ｐｂ（Ⅱ）是以金属巯基复合物（金属巯基比为１∶２）的形式同金属硫蛋白结合,表观离解常数（ＫＤ）为８．７１×１０－７ｍｏｌ／Ｌ．在自由铅浓度达到６．５２×１０－６ｍｏｌ／Ｌ的条件下,铅离子即可将Ｚｎ－ＭＴ上的Ｚｎ完全取代下来．通过ＥＤＴＡ、ＤＴＮＢ竞争反应、圆二色性（ＣＤ）光谱分析,认为Ｐｂ－ＭＴ的金属巯基复合物不同于Ｚｎ－ＭＴ中Ｚｎ与巯基形成的紧密的正四面体结构,而是可能形成一种三级结构相对松散、热力学上不稳定的Ｃｙｓ－Ｓ－Ｐｂ－Ｓ－Ｃｙｓ平面形结构．研究认为金属硫蛋白的两种亚型ＭＴ－Ⅰ、ＭＴ－Ⅱ与Ｐｂ（Ⅱ）的结合能力并无显著差异     

植物金属硫蛋白及其重金属解毒机制研究进展

金属硫蛋白是一类分子量较小、富含Cys的金属结合蛋白,广泛分布于生物界。近年来从植物中克隆到许多编码金属硫蛋白的基因,并在研究基因表达模式、组织表达特异性以及基因结构,如启动子、内含子在染色体上的定位等方面取得了一定进展,但对其功能的研究还处于起步阶段。很多实验表明,植物金属硫蛋白可以通过其大量的Cys残基螯合重金属并清除活性氧,使植物避免氧化损伤。文章介绍了植物金属硫蛋白的分类、特征、基因结构及其在植物重金属解毒中的作用。      

高活性重组hG-CSF的制备

我们构建了新的硫氧还蛋白（Ｔｈｉｏｒｅｄｏｘｉｎ）融合表达载体ｐＥＴＴｒｘＬ和ｐＥＴＴｒｘ－ＨｉｓＬ,它们可使功能蛋白在大肠杆菌胞质中以可溶性形式高效表达。利用此表达系统成功地获得的ｈＧ－ＣＳＦ－硫氧还蛋白融合蛋白的高效可溶性表达,表达水平达总细胞可溶蛋白的４１％以上。所表达的ｈＧ－ＣＳＦ－硫氧还蛋白融合蛋白可通过Ｃｕ２＋－ＩＤＡＳｅｐｈａｒｏｓｅＦＦ固相金属螯合层析柱,方便地从细胞破碎可溶上清中直接纯化。所获得的融合蛋白具有ｈＧ－ＣＳＦ特异的生物活性,其比活性达到０．５－１．３３×１０７ｕ／ｍｇ融合蛋白。这样表达的ｈＧ－ＣＳＦ融合蛋白能被ＩｇＡ蛋白酶特异地切割,将ｈＧ－ＣＳＦ从融合蛋白上切下获得与天然蛋白一级结构完全一致的重组ｈＧ－ＣＳＦ 。     

蓝藻的类金属硫蛋白及其研究进展

单细胞蓝藻中的类金属硫蛋白已经得到分离纯化,并在蛋白质水平上与标准的哺乳动物金属硫蛋白做了对比性分析,发现二者氨基酸组成和序列差异很大,前者只形成一个结构域,但二级结构和金属结合性质具有一定的相似性,是进化上功能趋同的表现．同时克隆并分析了它的基因ORF结构,研究了金属诱导和逆向转录抑制对于蛋白质表达的调控及类似于哺乳动物金属硫蛋白基因具有的放大和重排现象机理,提出了近期研究的重点和方向．     

集胞藻类金属硫蛋白的纯化,性质和溶液构象的研究

集胞藻Synechocysitissp.PCC6803光照培养,加入100μmol/LZnCl2诱导藻内类金属硫蛋白（MT-like）的表达。离心收集鲜藻,超声波破碎细胞,离心除沉淀。上清液72℃加热3min去杂蛋白,离心,上清液依次经过分子筛层析柱,阴离子交换柱和脱盐柱,可得蓝藻类金属硫蛋白。5L培养液收集鲜藻7.6g,一次上样1．52g鲜藻的裂解物,冻干后得15mg纯化的蛋白样,为鲜藻重的0．1％．经分析其等电点为pH4．5,分子量为6．986kD,由58个氨基酸残基组成。其序列中含有较多疏水氨基酸残基（36％）,但其半胱氨酸含量仅为5％。CD（圆二色性）图谱表明其二级结构主要为无规卷曲,不含α－helix和β-sheet,无哺乳动物的金属硫蛋白所具有的典型双结构域结构。紫外吸收光谱表明Zn结合的类金属硫蛋白在220nm也有较高的吸收值。红外光谱分析的结果表明,此类金属硫蛋白的吸收光谱与高等动物的金属硫蛋白的吸收光谱类似。     

小型猪CYP3A88基因克隆与其他动物的序列比较

目的克隆我国资源小型猪品系巴马香猪肝脏中的CYP3A88基因,并进行生物信息学分析。方法应用RACE（Rapid Amplification of cDNA Ends）技术对其全长进行扩增,测序,利用Internet和GenBank数据库对其序列进行生物信息学分析。结果首次克隆并鉴定了我国资源小型猪品系巴马香猪肝脏中CYP3A88（GenBank登录号：EF625347）的编码区,获得大小为1965bp的全长cDNA,编码区长为1512bp,编码503个氨基酸;比较核苷酸序列,与小型猪CYP3A39相似性高达94%,而与人等其它动物的CYP3A相似性则在86%以下;推导和分析氨基酸序列表明,与小型猪CYP3A其它成员（CYP3A39、CYP3A29、CYP3A22）进行对比,其相似性分别为92%,89%,80%,而将小型猪与人的CYP3A分别比对,小型猪CYP3A88与人CYP3A4相似性最高,为77%;对其二级结构预测,它可能含12个α螺旋,4个β折叠;经NCBI上的CDD程序分析可知,其39～491氨基酸区域为P4503A亚家族保守结构区域;经聚类分析,小型猪和狗的CYP3A与人有较近的进化关系;通过同源建模法对其在线建模,人CYP3A4晶体结构作为其模建模型,得到了其经典的三维结构。结论在猪CYP3A家族四个基因中,CYP3A88在序列和高级结构上均与人CYP3A4的最为相似。     

Prediction of backbone dihedral angles and protein secondary structure using support vector machines

Background  

The prediction of the secondary structure of a protein is a critical step in the prediction of its tertiary structure and, potentially, its function. Moreover, the backbone dihedral angles, highly correlated with secondary structures, provide crucial information about the local three-dimensional structure.     

A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment

A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. Given a sequence, explicit formulae are derived to select (1) its globally most probable core structure from a structure library; (2) its globally most probable alignment to a given core structure; (3) its most probable joint core structure and alignment chosen globally across the entire library; and (4) its most probable individual segments, secondary structure, and super-secondary structures across the entire library. The computations involved are NP-hard in the general case (3D-3D). Fast exact recursions for the restricted sequence singleton-only (1D-3D) case are given. Conclusions include: (a) the most probable joint core structure and alignment is not necessarily the most probable alignment of the most probable core structure, but rather maximizes the product of core and alignment probabilities; (b) use of a sequence-independent linear or affine gap penalty may result in the highest-probability threading not having the lowest score; (c) selecting the most probable core structure from the library (core structure selection or fold recognition only) involves comparing probabilities summed over all possible alignments of the sequence to the core, and not comparing individual optimal (or near-optimal) sequence-structure alignments; and (d) assuming uninformative priors, core structure selection is equivalent to comparing the ratio of two global means.     

Paradigm development: comparative and predictive 3D modeling of HIV-1 Virion Infectivity Factor (Vif)

Obtaining structural information about Vif is of interest for several reasons that include the study of the interaction of Vif with APOBEC3G, a resistance factor. Vif is a potential drug target and its function is essential for the HIV-1 infectivity process. To study Vif mechanism of action, we need to decipher its structure. Pivotal in this approach is the painstaking prediction of its protein structure. The three-dimensional (3D) crystal structure for Vif has not been established. In order to understand its mechanism of action, information on the structure of Vif is very much needed. Therefore we undertook this study based on the hypothesis that information from structurally homologous proteins can be used to predict the 3D structure of Vif by computer modeling and threading. As a result the structure of HIV-1 Vif has been modeled and deposited in the theoretical models section and accepted with the PDB code 1VZF. Here, we present the results of the comparative modeling strategy we used to predict the 3D structure of Vif.     

Solution structure of the complex between CR2 SCR 1-2 and C3d of human complement: an X-ray scattering and sedimentation modelling study

Complement receptor type 2 (CR2, CD21) forms a tight complex with C3d, a fragment of C3, the major complement component. Previous crystal structures of the C3d-CR2 SCR 1-2 complex and free CR2 SCR 1-2 showed that the two SCR domains of CR2 form contact with each other in a closed V-shaped structure. SCR 1 and SCR 2 are connected by an unusually long eight-residue linker peptide. Medium-resolution solution structures for CR2 SCR 1-2, C3d, and their complex were determined by X-ray scattering and analytical ultracentrifugation. CR2 SCR 1-2 is monomeric. For CR2 SCR 1-2, its radius of gyration R(G) of 2.12(+/-0.05) nm, its maximum length of 10nm and its sedimentation coefficient s20,w(o) of 1.40(+/-0.03) S do not agree with those calculated from the crystal structures, and instead suggest an open structure. Computer modelling of the CR2 SCR1-2 solution structure was based on the structural randomisation of the eight-residue linker peptide joining SCR 1 and SCR 2 to give 9950 trial models. Comparisons with the X-ray scattering curve indicated that the most favoured arrangements for the two SCR domains corresponded to an open V-shaped structure with no contacts between the SCR domains. For C3d, X-ray scattering and sedimentation velocity experiments showed that it exists as a monomer-dimer equilibrium with a dissociation constant of 40 microM. The X-ray scattering curve for monomeric C3d gave an R(G) value of 1.95 nm, and this together with its s20,w(o) value of 3.17 S gave good agreement with the monomeric C3d crystal structure. Modelling of the C3d dimer gave good agreements with its scattering and ultracentrifugation parameters. For the complex, scattering and ultracentrifugation experiments showed that there was no dimerisation, indicating that the C3d dimerisation site was located close to the CR2 SCR 1-2 binding site. The R(G) value of 2.44(+/-0.1) nm, its length of 9 nm and its s20,w(o) value of 3.45(+/-0.01) S showed that its structure was not much more elongated than that of C3d. Calculations with 9950 models of CR2 SCR 1-2 bound to C3d through SCR 2 showed that SCR 1 formed an open V-shaped structure with SCR 2 and was capable of interacting with the surface of C3d. We conclude that the open V-shaped structures formed by CR2 SCR 1-2, both when free and when bound to C3d, are optimal for the formation of a tight two-domain interaction with its ligand C3d.     

Comparison of model and nuclear magnetic resonance structures for the human inflammatory protein C5a

The model structure previously proposed for human C5a, based upon the crystal structure of the homologous protein human C3a, is compared to the solution structure of human C5a recently determined by nuclear magnetic resonance (NMR) methods in our laboratory. The general folding and helix topography of the C5a protein were modeled very well. The N-terminus, which is disordered in the C3a crystal, was correctly predicted in the C5a model both as to its being a helix and as to its docking site on the rest of the molecule. On the other hand, the NMR data show that the biologically important C-terminal residues are disordered in solution, unlike the model and the C3a crystal structure where this region was helical.     

Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein

The structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein, was determined by NMR spectroscopy. The structure is dominated by a beta-barrel sandwich. A two-stranded anti-parallel beta-sheet, which seals off one end of the beta-barrel, is flanked by two flexible loops rich in acidic amino acids. Although this fold often provides a ligand binding site, the structure did not reveal an appreciable cavity inside the beta-barrel. The three-dimensional structure of At3g04780.1-des15 provides an entry point for understanding its functional role and those of its mammalian homologs.     

Association of reovirus outer capsid proteins sigma 3 and mu 1 causes a conformational change that renders sigma 3 protease sensitive.

Association of the reovirus proteins sigma 3 and mu 1 influences viral entry, initiation of outer capsid assembly, and modulation of the effect of sigma 3 on cellular translation. In this study, we have addressed whether structural changes occur in sigma 3 as a result of its interaction with mu 1. Using differences in protease sensitivity to detect conformationally distinct forms of sigma 3, we showed that association of sigma 3 with mu 1 caused a conformational change in sigma 3 that converted it from a protease-resistant to a protease-sensitive structure and occurred posttranslationally. The effect of mu 1 on the structure of sigma 3 was stoichiometric. Our results are consistent with a model in which sigma 3's association with mu 1 shifts its function from translational control to assembly of an outer capsid in which sigma 3 is folded into the protease-sensitive conformation that is required for its cleavage during the next round of infection.     

寡聚脱氧核苷酸的结构与抗降解特性的研究

合成了４段具有不同高级结构或不同修饰的寡聚脱氧核苷酸,检查它们在２０％血清中的稳定性．发现：（１）寡核苷酸主要被血清中的３′外切核酸酶降解,未经修饰的线性寡核苷酸降解严重;（２）末端部分硫代修饰的寡核苷酸稳定性明显提高;（３）自身互补形成的配对结构可有效保护３′末端．具有４个以上（含４个）ＧＣ对的３′端发夹结构寡核苷酸,其抗核酸酶的能力几乎与硫代修饰的寡核苷酸相当．