Genetic and Morphological Differentiation of the Indo-West Pacific Intertidal Barnacle Chthamalus malayensis

Chthamalus malayensis is a common intertidal acorn barnacle widely distributed in the Indo-West Pacific. Analysis of sequences of mitochondrial cytochrome c oxidase subunit I reveals four genetically differentiated clades with almost allopatric distribution in this region. The four clades exhibit morphological differences in arthropodal characters, including the number of conical spines and number of setules of the basal guard setae on the cirri. These characters are, however, highly variable within each clade; such that the absolute range of the number of conical spines and setules overlaps between clades, and therefore, these are not diagnostic characters for taxonomic identification. The geographic distribution of the four clades displays a strong relationship between surface temperatures of the sea and ocean-current realms. The Indo-Malay (IM) clade is widespread in the tropical, equatorial region, including the Indian Ocean, Malay Peninsula, and North Borneo. The South China (SC) and Taiwan (TW) clades are found in tropical to subtropical regions, with the former distributed along the coasts of southern China, Vietnam, Thailand, and the western Philippines under the influence of the South China Warm Current. The TW clade is endemic to Taiwan, while the Christmas Island (CI) clade is confined to CI. There was weak or no population subdivision observed within these clades, suggesting high gene flow within the range of the clades. The clades demonstrate clear signatures of recent demographic expansion that predated the Last Glacial Maximum (LGM), but they have maintained a relatively stable effective population in the past 100,000 years. The persistence of intertidal fauna through the LGM may, therefore, be a common biogeographic pattern. The lack of genetic subdivision in the IM clade across the Indian and Pacific Oceans may be attributed to recent expansion of ranges and the fact that a mutation-drift equilibrium has not been reached, or the relaxed habitat requirements of C. malayensis that facilitates high concurrent gene flow. Further studies are needed to determine between these alternative hypotheses.     

Zinc metalloprotease activity in the cement precursor secretion of the barnacle, Chthamalus fragilis Darwin

Adult barnacles, Chathamalus fragilis, were removed carefully from the leaves and stems of marsh grass and floated base-up in algae-supplemented sea water. During the next 24-72 h, the animals secreted onto their exposed bases, a fluid, the cement precursor secretion (CPS), aliquots of which were collected in glass micropipets and pooled. The concentration of protein in pooled samples of CPS averaged 1.5 g +/- 0.42 protein/l of secretion. Protease activity was expressed as A(492) units/h/g of CPS protein. Aliquots of 5-45 l of pooled CPS samples, incubated in the presence of FTC-casein at 37 degrees C for 24 h, exhibited 8.31 x 10(-5) +/- 1.55 x 10(-5) DeltaA(492) units/hr/g of protein on average. Protease activity was optimized by the addition of 10 mM Ca(++) ions. Activity was detectable over a broad pH range, but was optimal around pH 8. Protease activity was inhibited up to 40% in the presence of 2.7 mM ethylenediaminetetraacetic acid (EDTA) and up to 97% in the presence of 2.5 mM 1,10-phenanthroline (OP) in the presence of 10 mM Ca(++) ions. Although low concentrations of Zn(++) ions (10 M) had little effect on protease activity, higher concentrations of Zn(++) ions (50 M to 15 mM Zn(++)) inhibited CPS protease activity. Protease activity was not inhibited by 1 mM phenylmethylsulfonylfluoride (PMSF), nor by 28 M E64, nor by 20 M leupeptin. At the present time, the protease activity in the barnacle CPS may best be characterized as a Ca-stimulated Zn-metalloprotease.     

The importance of transitions for hatching success and brood mortality in the barnacle Chthamalus fragilis under laboratory conditions

Hydrobiologia - Most organisms experience ontogenescence (high and decreasing mortality from conception to the age of maturity) in spite of the clear evolutionary disadvantage of dying prior to...     

The Impact of Ecology and Biogeography on Legume Diversity,Endemism, and Phylogeny in the Caribbean Region: A New Direction in Historical Biogeography

The legume family is so well represented in the Caribbean that if a preserve was needed somewhere on earth to harbor all of the primary lineages in this family, the flora of just Cuba would suffice. Molecular phylogenetic, biogeographic, and evolutionary rates analysis all suggest that legume diversity and endemism in the Caribbean are mostly of recent origin and are likely a function of the abundance of seasonally dry tropical forests (SDTFs) throughout the neotropics. Legumes have a strong ecological affinity for SDTFs, and the Caribbean basin is well covered by this forest type. Rate-variable molecular clock analysis suggests that the majority of worldwide island lineages of legumes have ages of much less than 30 Ma. Singular historical events invoking land bridges or mobile continental plates are thus not needed to explain Caribbean legume diversity and endemism. The Greater Antilles are large islands located close to the American continent. They are therefore expected to fairly represent the diverse continental lineages of legumes. Yet, they are distant enough to be dispersal limited. As such, island lineages can speciate and diversify over evolutionary time unimpeded by high rates of immigration from the mainland. Vicariance and other standard phylogenetic methods of historical biogeography are likely to be replaced by those of ecological and island biogeography. This is because model selection approaches derived from the neutral concept of isolation by distance will be able to quantify patterns of alpha and beta diversity and detect niche assembly and phylogenetic niche conservatism within and among metacommunities that are hypothesized to constrain phylogeny.     

Microclimate and substrate quality controls on nitrogen mineralization in a New England high salt marsh

New England high salt marsh primary productivity is limited by N, but variation in plant N availability across salt marsh vegetation zones has not been quantified. To investigate this, we measured in situ net N mineralization rates throughout the growing season in three zones of a Maine high salt marsh, Juncus gerardii, Spartina patens, and mixed perennial forb. We also measured microclimate factors (soil temperatures and moistures) and substrate quality parameters (soil organic matter, soil total nitrogen, soil C:N ratio) to see if either related to differences in net N mineralization. To determine the relative importance of substrate quality and microclimate, we measured N mineralization of the different soil types in the laboratory, holding microclimate parameters constant. We also investigated the relative importance of microclimate and substrate statistically, with principal components analysis and multiple regression. In situ net N mineralization rates were significantly higher in the forb zone than in graminoid zones, but graminoid zone N mineralization rates did not vary significantly from each other. Soil temperatures, moistures, carbon, and nitrogen were all significantly higher in the forb zone than in graminoid zones, but C:N ratio did not vary significantly across zones. Principal components analysis and multiple regression revealed that microclimate was a more significant predictor of total N mineralized over the course of the growing season than was substrate quality. In contrast, when microclimate conditions were held constant, forb zone N mineralization was still significantly higher than that of graminoid zones, suggesting that substrate quality does exert some control on this process. Thus, both microclimate and substrate quality appear to influence N mineralization rates across vegetation zones of this Maine salt marsh.     

The vertical distribution of Chthamalus montagui and Chthamalus stellatus (Crustacea,Cirripedia) in two areas of the NW Mediterranean Sea

The Mediterranean Sea is characterised by a small tidal range (0.3–1 m). Despite this, intertidal communities are well established and their upper limits often extend above mean high water level. Organisms living in the intertidal region and in the supralittoral zone rely on both tides and wave action to perform their biological functions. Lack of food, desiccation and predation are common stresses in such a harsh environment. The present study deals with the vertical distribution of two species of intertidal barnacles, Chthamalus montagui Southward and Chthamalus stellatus (Poli), which are the main constituents of the barnacle belt along Mediterranean rocky shores. Previous work, carried out in the Atlantic, showed that where the distribution ranges of the two Chthamalus species overlap, C. montagui is more common in the upper barnacle zone while C. stellatus is dominant lower down. The main aims of our study are: (1) to establish if there is a relationship between position and extension of the barnacle belt on the shore and tidal range and/or wave exposure, (2) to test the hypothesis that in the study areas C. montagui is more abundant than C. stellatus high on the shore, and that the pattern is reversed lower down. Barnacle populations were monitored in summer 1998 in the Gulf of Genoa (Ligurian Sea) and in the Gulf of Trieste (North-Adriatic Sea). The two areas differ in tidal range and hydrodynamism, the former presenting quite strong wave action and a tidal range of 30 cm, the latter having limited wave action and 1 m tidal range. Three shores were randomly selected in each gulf and two transects on each shore. Counts of barnacles in 10 ^* 10 cm quadrats were done at different shore heights along each transect. The data was subjected to analysis of variance. Results showed that a more pronounced hydrodynamic regime corresponded to a shift of the barnacle belt towards the higher shore (Gulf of Genoa), while in more sheltered areas (Gulf of Trieste), the barnacle distribution was confined to the intertidal region. The relative spatial distribution of C. montagui and C. stellatus within the barnacle belt varied locally, even between transects on the same shore, and this obscured the distribution pattern along the vertical gradient. Nevertheless, it was still possible to conclude that at mid and high shore in Genoa, C. stellatus was more abundant than C. montagui, while in Trieste the pattern was reversed.     

Myxomycetes:Biology,Systematics,Biogeography,and Ecology

正黏菌是丰富多彩的生物多样性世界提供给人类的一个独特类群。Myxomycetes:Biology,Systematics,Biogeography,and Ecology是迄今为止全方位、多视角展示黏菌生物学的第一本巨著。由美国阿肯色大学Steven L.Stephenson教授等活跃在当今黏菌各研究领域的,以及来自全球11个国家的29位国际知名黏菌学者共同完成。全书按照领域和专题分为13章,由不同作者分别编写,中国工程院院士、《菌物研究》主编、吉林农业大学李玉教授及其团队成员工琦教授和刘朴教授是"第六章黏菌生理学和生物化学"的作者。     

Vagility: The Neglected Component in Historical Biogeography

The conceptual gap between ecological and historical biogeography is wide, although both disciplines are concerned with explaining how distributions have been shaped. A central aim of modern historical biogeography is to use a phylogenetic framework to reconstruct the geographic history of a group in terms of dispersals and vicariant events, and a number of analytical methods have been developed to do so. To date the most popular analytical methods in historical biogeography have been parsimony-based. Such methods can be classified into two groups based on the assumptions used. The first group assumes that vicariance between two areas creates common patterns of disjunct distributions across several taxa whereas dispersals and extinctions generate clade specific patterns. The second group of methods assumes that passive vicariance and within-area speciation have a higher probability of occurrence than active dispersal events and extinction. Typically, none of these methods takes into account the ecology of the taxa in question. I discuss why these methods can be potentially misleading if the ecology of the taxon is ignored. In particular, the vagility or dispersal ability of taxa plays a pivotal role in shaping the distributions and modes of speciation. I argue that the vagility of taxa should be explicitly incorporated in biogeographic analyses. Likelihood-based methods with models in which more realistic probabilities of dispersal and modes of speciation can be specified are arguably the way ahead. Although objective quantification will pose a challenge, the complete ignorance of this vital aspect, as has been done in many historical biogeographic analyses, can be dangerous. I use worked examples to show a simple way of utilizing such information, but better methods need to be developed to more effectively use ecological knowledge in historical biogeography.     

Microclimate, Canopy Structure and Photosynthesis in Canopies of Three Contrasting Temperate Forage Grasses: II. Microclimate and Canopy Structure

Profiles of shortwave radiation, net radiation and temperaturewere measured in swards of three grasses of contrasting structureLolium perenne cv. S24, L. perenne cv. Reveille and Festucaarundinacea cv. S170. Measurements were also made of the reflectionof shortwave radiation, leaf water potential and stomatal resistance.Differences in canopy structure influenced the absorption andreflection of radiation by the varieties. The absorption ofnet radiation and its influence on air temperature inside thecanopy was shown to vary with canopy structure. Calculationsshowed that diurnal changes in the reflection and transmissionof light (400–700 nm) would have little effect on canopyphotosynthesis. No clear relationship between leaf extensionrate, temperature and leaf water potential could be established,although decreases in water potential did appear to reduce thepotential response of leaf extension rate to temperature.     

Streptomyces Exploration: Competition,Volatile Communication and New Bacterial Behaviours

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The South American Gomphotheres (Mammalia, Proboscidea, Gomphotheriidae): Taxonomy, Phylogeny, and Biogeography

The taxonomic history of South American Gomphotheriidae is very complex and controversial. Three species are currently recognized: Amahuacatherium peruvium, Cuvieronius hyodon, and Notiomastodon platensis. The former is a late Miocene gomphothere whose validity has been questioned by several authors. The other two, C. hyodon and N. platensis, are Quaternary taxa in South America, and they have distinct biogeographic patterns: Andean and lowland distributions, respectively. South American gomphotheres became extinct at the end of the Pleistocene. We conducted a phylogenetic analysis of Proboscidea including the South American Quaternary gomphotheres, which resulted in two most parsimonious trees. Our results support a paraphyletic Gomphotheriidae and a monophyletic South American gomphothere lineage: C. hyodon and N. platensis. The late Miocene gomphothere record in Peru, Amahuacatherium peruvium, seems to be a crucial part of the biogeography and evolution of the South American gomphotheres.     

Body size,fitness and compatibility in Barnacle Geese Branta leucopsis

Large-sized Barnacle Geese Branta leucopsis of both sexes had a higher probability of breeding successfully in any particular year and produced more goslings than did smaller birds. Large females paired at an earlier age, suggesting that they were preferred as mates and were likely to have entered the breeding population earlier. The relative sizes of the pair bond members also affected fitness. Most birds were able to maximize their breeding performance by mating with relatively similar sized partners; the greater the size disparity of mates, the lower the breeding performance. This supports the idea that compatibility of mates may be important in determining fitness of the pair. The success of different pair types was also affected by environmental conditions, with certain size combinations doing better in some years and poorly in other years.     

岛屿生物地理学理论：模型与应用

前言岛屿有许多显著特征,如地理隔离,生物类群简单。这些特点为重复性研究和统计学分析奠定了基础,从而有利于许多深入而细致的生物学研究。因此,岛屿为发展和检验自然选择、物种形成及演化,以及生物地理学和生态学诸领域的理论和假设,提供了重要的自然实验室。岛屿生物地理学理论(MacArthurwilson学说)即为岛屿生物学研究中所产生的著名理论之一。该理论发展之     

The Postponed Agenda: Archaeology and Human Biogeography in the Twenty-First Century

Scholarly views on the prehistory of the Pacific Islanders are currently undergoing a major shift in perspective and underlying assumptions. This shift is driven by new research data and a need for new theoretical perspectives on space, time, and causal process. A new research agenda is coming to the fore, replacing the agenda guiding Pacific studies since the 1950s. Instead of looking at these islands as remote, undeveloped human colonies scattered across a vast and empty expanse of sea, we are finding that the Pacific was a notably early sphere of human accomplishments, on land and sea, where the ocean was more an avenue than a barrier for cultural interchange. The roots of this new perspective can be traced back, in part, to the Wenner-Gren/Smithsonian conference on human biogeography held in Washington, D.C., in 1974.     

The Roles of Calcium in Excitation-Contraction Coupling in Various Muscles of the Frog, Mouse, and Barnacle

In rectus abdominis muscles of the frog the active shorteningprovoked by 15–40 mM K was supported by Ca, Sr, and Ba,but not by Ni, Co, Mn, Cd, or Zn ions. Addition of the lattercations to a solution containing Ca decreased the responsesin a manner suggesting competitive inhibition. The shorteningof the rectus muscle found in divalent cation-free, low K solutionsis abolished by Ni, Co, Mn, and Mg. In rat muscles a transientincrease in the contractural responses to elevated potassiumwas observed when Ni was applied following partial washout ofCa. In single muscle fibers of the barnacle, development oftension was supported by Ca and Sr, and the other divalent cationswere without effect. Retention of Ca⁴⁵ in barnacle resting musclefibers soaked in solutions containing 10 mM Ca for 2 min andsubsequently washed for 10 min was 60 ± 3.1 mµMCa/g, whereas retention of Ca⁴⁵ in contracting muscles similarlyexposed to Ca⁴⁵ was 156 + 17 mµM Ca/g of fresh muscle.The results are compatible with the idea that activation ofcontraction in some types of muscles is due to entry of extracellularCa.     

Historical Biogeography: Evolution in Time and Space

Biogeography is the discipline of biology that studies the present and past distribution patterns of biological diversity and their underlying environmental and historical causes. For most of its history, biogeography has been divided into proponents of vicariance explanations, who defend that distribution patterns can mainly be explained by geological, tectonic-isolating events; and dispersalists, who argue that current distribution patterns are largely the result of recent migration events. This paper provides an overview of the evolution of the discipline from methods focused on finding general patterns of distribution (cladistic biogeography), to those that integrate biogeographic processes (event-based biogeography), to modern probabilistic approaches (parametric biogeography). The latter allows incorporating into biogeographic inference estimates of the divergence time between lineages (usually based on DNA sequences) and external sources of evidence, such as information on past climate and geography, the organism fossil record, or its ecological tolerance. This has revolutionized the discipline, allowing it to escape the dispersal versus vicariance dilemma and to address a wider range of evolutionary questions, including the role of ecological and historical factors in the construction of biomes or the existence of contrasting patterns of range evolution in animals and plants.